Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:32:53 (31301): wrapper (7.7.26015): starting
09:32:53 (31301): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:32:53] Arguments: --nthreads 8
[2025-06-04 09:32:53] Threads: 8
[2025-06-04 09:32:53] Checking for CVMFS
[2025-06-04 09:32:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:32:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:32:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:32:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:32:56] 2.11.2.0 8420 32928 93176 146772 3 16 18217838 25165825 3906 130560 0 17004404 99.806 19566965 2140 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 09:32:56] CVMFS is ok
[2025-06-04 09:32:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:32:56] Checking for apptainer binary...
[2025-06-04 09:32:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:32:56] Running /usr/bin/apptainer --version
[2025-06-04 09:32:56] apptainer version 1.3.2-1.el7
[2025-06-04 09:32:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:33:28] cg-vwn396.simple-grid.lan
[2025-06-04 09:33:28] apptainer works
[2025-06-04 09:33:28] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:33:28] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:33:28] Starting ATLAS job with PandaID=6677735726
[2025-06-04 09:33:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:25:59]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:25:59] 2025-06-04 11:25:43,188 | INFO     | extracted standard info from prmon json
[2025-06-04 13:25:59] 2025-06-04 11:25:43,188 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 13:25:59] 2025-06-04 11:25:43,188 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 13:25:59] 2025-06-04 11:25:43,189 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:25:59] 2025-06-04 11:25:43,189 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:25:59] 2025-06-04 11:25:43,211 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:25:59] 2025-06-04 11:25:43,216 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,218 | INFO     | sum of deviations: 72623521146.99992
[2025-06-04 13:25:59] 2025-06-04 11:25:43,218 | INFO     | mean x: 1749029676.0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,218 | INFO     | mean y: 2443517.5161290322
[2025-06-04 13:25:59] 2025-06-04 11:25:43,218 | INFO     | -- intersect: -40086635350.06131
[2025-06-04 13:25:59] 2025-06-04 11:25:43,218 | INFO     | intersect: -40086635350.06131
[2025-06-04 13:25:59] 2025-06-04 11:25:43,219 | INFO     | chi2: 5.763852672220791
[2025-06-04 13:25:59] 2025-06-04 11:25:43,223 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,225 | INFO     | sum of deviations: 70857498373.99998
[2025-06-04 13:25:59] 2025-06-04 11:25:43,226 | INFO     | mean x: 1749029523.5
[2025-06-04 13:25:59] 2025-06-04 11:25:43,226 | INFO     | mean y: 2442260.7641509436
[2025-06-04 13:25:59] 2025-06-04 11:25:43,226 | INFO     | -- intersect: -41945108885.51228
[2025-06-04 13:25:59] 2025-06-04 11:25:43,226 | INFO     | intersect: -41945108885.51228
[2025-06-04 13:25:59] 2025-06-04 11:25:43,226 | INFO     | chi2: 5.774841326306523
[2025-06-04 13:25:59] 2025-06-04 11:25:43,227 | INFO     | current chi2=5.774841326306523 (change=-0.19064772662722634 %)
[2025-06-04 13:25:59] 2025-06-04 11:25:43,227 | INFO     | right removable region: 211
[2025-06-04 13:25:59] 2025-06-04 11:25:43,232 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,234 | INFO     | sum of deviations: -1584864545.9999952
[2025-06-04 13:25:59] 2025-06-04 11:25:43,235 | INFO     | mean x: 1749029828.5
[2025-06-04 13:25:59] 2025-06-04 11:25:43,235 | INFO     | mean y: 2496337.5754716983
[2025-06-04 13:25:59] 2025-06-04 11:25:43,235 | INFO     | -- intersect: 940734346.5650657
[2025-06-04 13:25:59] 2025-06-04 11:25:43,235 | INFO     | intersect: 940734346.5650657
[2025-06-04 13:25:59] 2025-06-04 11:25:43,240 | INFO     | chi2: 1.003850832335655
[2025-06-04 13:25:59] 2025-06-04 11:25:43,240 | INFO     | current chi2=1.003850832335655 (change=82.58368335516677 %)
[2025-06-04 13:25:59] 2025-06-04 11:25:43,240 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,242 | INFO     | sum of deviations: -27769415093.0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,242 | INFO     | mean x: 1749029981.0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,242 | INFO     | mean y: 2515726.7729468597
[2025-06-04 13:25:59] 2025-06-04 11:25:43,242 | INFO     | -- intersect: 17662270213.64858
[2025-06-04 13:25:59] 2025-06-04 11:25:43,243 | INFO     | intersect: 17662270213.64858
[2025-06-04 13:25:59] 2025-06-04 11:25:43,243 | INFO     | chi2: 0.16739073532582432
[2025-06-04 13:25:59] 2025-06-04 11:25:43,243 | INFO     | current chi2=0.16739073532582432 (change=83.32513856303162 %)
[2025-06-04 13:25:59] 2025-06-04 11:25:43,287 | INFO     | sum of square deviations: 2555770710.5
[2025-06-04 13:25:59] 2025-06-04 11:25:43,289 | INFO     | sum of deviations: -25498284473.500004
[2025-06-04 13:25:59] 2025-06-04 11:25:43,289 | INFO     | mean x: 1749030133.5
[2025-06-04 13:25:59] 2025-06-04 11:25:43,289 | INFO     | mean y: 2513904.5495049506
[2025-06-04 13:25:59] 2025-06-04 11:25:43,290 | INFO     | -- intersect: 17452149630.276196
[2025-06-04 13:25:59] 2025-06-04 11:25:43,290 | INFO     | intersect: 17452149630.276196
[2025-06-04 13:25:59] 2025-06-04 11:25:43,290 | INFO     | chi2: 0.15286441997528166
[2025-06-04 13:25:59] 2025-06-04 11:25:43,290 | INFO     | current chi2=0.15286441997528166 (change=8.678088020981175 %)
[2025-06-04 13:25:59] 2025-06-04 11:25:43,290 | INFO     | left removable region: 30
[2025-06-04 13:25:59] 2025-06-04 11:25:43,291 | INFO     | sum of square deviations: 1838657730.0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,300 | INFO     | sum of deviations: -4428046363.999998
[2025-06-04 13:25:59] 2025-06-04 11:25:43,300 | INFO     | mean x: 1749030408.0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,300 | INFO     | mean y: 2495536.9779005526
[2025-06-04 13:25:59] 2025-06-04 11:25:43,301 | INFO     | -- intersect: 4214692082.481687
[2025-06-04 13:25:59] 2025-06-04 11:25:43,301 | INFO     | intersect: 4214692082.481687
[2025-06-04 13:25:59] 2025-06-04 11:25:43,301 | INFO     | chi2: 0.06245494730648617
[2025-06-04 13:25:59] 2025-06-04 11:25:43,301 | INFO     | -- intersect: 4214692082.481687
[2025-06-04 13:25:59] 2025-06-04 11:25:43,301 | INFO     | current memory leak: -2.41 B/s (using 181 data points, chi2=0.06)
[2025-06-04 13:25:59] 2025-06-04 11:25:43,302 | INFO     | ..............................
[2025-06-04 13:25:59] 2025-06-04 11:25:43,302 | INFO     | . Timing measurements:
[2025-06-04 13:25:59] 2025-06-04 11:25:43,302 | INFO     | . get job = 0 s
[2025-06-04 13:25:59] 2025-06-04 11:25:43,302 | INFO     | . initial setup = 8 s
[2025-06-04 13:25:59] 2025-06-04 11:25:43,302 | INFO     | . payload setup = 141 s
[2025-06-04 13:25:59] 2025-06-04 11:25:43,302 | INFO     | . stage-in = 0 s
[2025-06-04 13:25:59] 2025-06-04 11:25:43,303 | INFO     | . payload execution = 13369 s
[2025-06-04 13:25:59] 2025-06-04 11:25:43,303 | INFO     | . stage-out = 2 s
[2025-06-04 13:25:59] 2025-06-04 11:25:43,303 | INFO     | . log creation = 0 s
[2025-06-04 13:25:59] 2025-06-04 11:25:43,303 | INFO     | ..............................
[2025-06-04 13:25:59] 2025-06-04 11:25:43,436 | INFO     | 
[2025-06-04 13:25:59] 2025-06-04 11:25:43,436 | INFO     | job summary report
[2025-06-04 13:25:59] 2025-06-04 11:25:43,436 | INFO     | --------------------------------------------------
[2025-06-04 13:25:59] 2025-06-04 11:25:43,436 | INFO     | PanDA job id: 6677735726
[2025-06-04 13:25:59] 2025-06-04 11:25:43,436 | INFO     | task id: 45006595
[2025-06-04 13:25:59] 2025-06-04 11:25:43,436 | INFO     | errors: (none)
[2025-06-04 13:25:59] 2025-06-04 11:25:43,437 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:25:59] 2025-06-04 11:25:43,437 | INFO     | pilot state: finished 
[2025-06-04 13:25:59] 2025-06-04 11:25:43,437 | INFO     | transexitcode: 0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,437 | INFO     | exeerrorcode: 0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,437 | INFO     | exeerrordiag: 
[2025-06-04 13:25:59] 2025-06-04 11:25:43,437 | INFO     | exitcode: 0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,437 | INFO     | exitmsg: OK
[2025-06-04 13:25:59] 2025-06-04 11:25:43,437 | INFO     | cpuconsumptiontime: 49051 s
[2025-06-04 13:25:59] 2025-06-04 11:25:43,437 | INFO     | nevents: 400
[2025-06-04 13:25:59] 2025-06-04 11:25:43,437 | INFO     | neventsw: 0
[2025-06-04 13:25:59] 2025-06-04 11:25:43,438 | INFO     | pid: 12666
[2025-06-04 13:25:59] 2025-06-04 11:25:43,438 | INFO     | pgrp: 12666
[2025-06-04 13:25:59] 2025-06-04 11:25:43,438 | INFO     | corecount: 8
[2025-06-04 13:25:59] 2025-06-04 11:25:43,438 | INFO     | event service: False
[2025-06-04 13:25:59] 2025-06-04 11:25:43,438 | INFO     | sizes: {0: 2404356, 1: 2405041, 2: 2405240, 12: 2405240, 23: 2405268, 34: 2405296, 45: 2405452, 55: 2405480, 66: 2405508, 77: 2405536, 88: 2405592, 90: 2406106, 99
[2025-06-04 13:25:59] 2025-06-04 11:25:43,438 | INFO     | --------------------------------------------------
[2025-06-04 13:25:59] 2025-06-04 11:25:43,438 | INFO     | 
[2025-06-04 13:25:59] 2025-06-04 11:25:43,438 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-06-04 13:25:59] 2025-06-04 11:25:43,475 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,476 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,476 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,476 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,476 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,476 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,476 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,476 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,476 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,477 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,477 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,477 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,477 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,477 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,477 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,477 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:25:59] 2025-06-04 11:25:43,478 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,478 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:25:59] 2025-06-04 11:25:43,478 | INFO     | job 6677735726 has completed (purged errors)
[2025-06-04 13:25:59] 2025-06-04 11:25:43,478 | INFO     | overall cleanup function is called
[2025-06-04 13:25:59] 2025-06-04 11:25:44,485 | INFO     | --- collectZombieJob: --- 10, [12666]
[2025-06-04 13:25:59] 2025-06-04 11:25:44,485 | INFO     | zombie collector waiting for pid 12666
[2025-06-04 13:25:59] 2025-06-04 11:25:44,485 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:25:59] 2025-06-04 11:25:44,486 | INFO     | collected zombie processes
[2025-06-04 13:25:59] 2025-06-04 11:25:44,486 | INFO     | will attempt to kill all subprocesses of pid=12666
[2025-06-04 13:25:59] 2025-06-04 11:25:44,709 | INFO     | process IDs to be killed: [12666] (in reverse order)
[2025-06-04 13:25:59] 2025-06-04 11:25:44,887 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:25:59] 2025-06-04 11:25:44,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:25:59] 2025-06-04 11:25:44,891 | INFO     | did not find any defunct processes belonging to 12666
[2025-06-04 13:25:59] 2025-06-04 11:25:44,894 | INFO     | did not find any defunct processes belonging to 12666
[2025-06-04 13:25:59] 2025-06-04 11:25:44,894 | INFO     | ready for new job
[2025-06-04 13:25:59] 2025-06-04 11:25:44,895 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:25:59] 2025-06-04 11:25:44,897 | INFO     | **************************************
[2025-06-04 13:25:59] 2025-06-04 11:25:44,897 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:25:59] 2025-06-04 11:25:44,897 | INFO     | **************************************
[2025-06-04 13:25:59] 2025-06-04 11:25:44,897 | INFO     | 
[2025-06-04 13:25:59] 2025-06-04 11:25:44,897 | INFO     | pilot is running in a VM
[2025-06-04 13:25:59] 2025-06-04 11:25:44,898 | INFO     | architecture information:
[2025-06-04 13:25:59] 2025-06-04 11:25:44,898 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:25:59] 2025-06-04 11:25:44,931 | INFO     | cat /etc/os-release:
[2025-06-04 13:25:59] NAME="CentOS Linux"
[2025-06-04 13:25:59] VERSION="7 (Core)"
[2025-06-04 13:25:59] ID="centos"
[2025-06-04 13:25:59] ID_LIKE="rhel fedora"
[2025-06-04 13:25:59] VERSION_ID="7"
[2025-06-04 13:25:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:25:59] ANSI_COLOR="0;31"
[2025-06-04 13:25:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:25:59] HOME_URL="https://www.centos.org/"
[2025-06-04 13:25:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:25:59] 
[2025-06-04 13:25:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:25:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:25:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:25:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:25:59] 
[2025-06-04 13:25:59] 2025-06-04 11:25:44,932 | INFO     | **************************************
[2025-06-04 13:25:59] 2025-06-04 11:25:45,434 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-06-04 13:25:59] 2025-06-04 11:25:45,501 | INFO     | sufficient remaining disk space (496433627136 B)
[2025-06-04 13:25:59] 2025-06-04 11:25:45,501 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:25:59] 2025-06-04 11:25:45,502 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:25:59] 2025-06-04 11:25:45,502 | INFO     | update_server=False
[2025-06-04 13:25:59] 2025-06-04 11:25:45,502 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:25:59] 2025-06-04 11:25:45,502 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 13:25:59] 2025-06-04 11:25:45,502 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:25:59] 2025-06-04 11:25:45,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:25:59] 2025-06-04 11:25:45,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:25:59] 2025-06-04 11:25:45,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:25:59] 2025-06-04 11:25:46,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:25:59] 2025-06-04 11:25:46,265 | INFO     | aborting loop
[2025-06-04 13:25:59] 2025-06-04 11:25:46,270 | INFO     | all job control threads have been joined
[2025-06-04 13:25:59] 2025-06-04 11:25:46,508 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:46,539 | INFO     | all data control threads have been joined
[2025-06-04 13:25:59] 2025-06-04 11:25:46,958 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:47,002 | INFO     | [job] validate thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:47,034 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:47,182 | INFO     | all payload control threads have been joined
[2025-06-04 13:25:59] 2025-06-04 11:25:47,267 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:47,276 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:47,277 | INFO     | [job] control thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:47,439 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:47,512 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:47,544 | INFO     | [data] control thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:47,738 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:47,768 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:25:59] 2025-06-04 11:25:47,943 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:47,944 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:48,187 | INFO     | [payload] control thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:48,477 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:25:59] 2025-06-04 11:25:49,483 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:51,777 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:25:59] 2025-06-04 11:25:53,516 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139634193979200)>', '<ExcThread(monitor, started 139633539147520)>']
[2025-06-04 13:25:59] 2025-06-04 11:25:53,553 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:25:59] 2025-06-04 11:25:53,553 | INFO     | [monitor] control thread has ended
[2025-06-04 13:25:59] 2025-06-04 11:25:58,542 | INFO     | all workflow threads have been joined
[2025-06-04 13:25:59] 2025-06-04 11:25:58,542 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:25:59] 2025-06-04 11:25:58,542 | INFO     | traces error code: 0
[2025-06-04 13:25:59] 2025-06-04 11:25:58,543 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:25:59] 2025-06-04 11:25:58,806 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:25:59] 2025-06-04 11:25:58,816 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:25:59] 2025-06-04 11:25:58,823 [wrapper] pilotpid: 6025
[2025-06-04 13:25:59] 2025-06-04 11:25:58,834 [wrapper] Pilot exit status: 0
[2025-06-04 13:25:59] 2025-06-04 11:25:58,883 [wrapper] pandaids: 6677735726
[2025-06-04 13:25:59] 2025-06-04 11:25:58,976 [wrapper] cleanup supervisor_pilot 23495 6026
[2025-06-04 13:25:59] 2025-06-04 11:25:59,013 [wrapper] Test setup, not cleaning
[2025-06-04 13:25:59] 2025-06-04 11:25:59,026 [wrapper] apfmon messages muted
[2025-06-04 13:25:59] 2025-06-04 11:25:59,029 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:25:59] 2025-06-04 11:25:59,123 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:25:59]  *** Error codes and diagnostics ***
[2025-06-04 13:25:59]     "exeErrorCode": 0,
[2025-06-04 13:25:59]     "exeErrorDiag": "",
[2025-06-04 13:25:59]     "pilotErrorCode": 0,
[2025-06-04 13:25:59]     "pilotErrorDiag": "",
[2025-06-04 13:25:59]  *** Listing of results directory ***
[2025-06-04 13:25:59] total 387416
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:03 pilot3.tar.gz
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc      5111 Jun  3 18:11 queuedata.json
[2025-06-04 13:25:59] -rwx------. 1 boinc boinc     37140 Jun  3 18:13 runpilot2-wrapper.sh
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc       100 Jun  4 09:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:25:59] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 09:32 run_atlas
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc       105 Jun  4 09:32 job.xml
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc      6392 Jun  4 09:32 init_data.xml
[2025-06-04 13:25:59] -rw-r--r--. 2 boinc boinc 213494990 Jun  4 09:32 EVNT.45006593._001538.pool.root.1
[2025-06-04 13:25:59] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:32 start_atlas.sh
[2025-06-04 13:25:59] drwxrwx--x. 2 boinc boinc        68 Jun  4 09:32 shared
[2025-06-04 13:25:59] -rw-r--r--. 2 boinc boinc    508881 Jun  4 09:32 input.tar.gz
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc         0 Jun  4 09:32 boinc_lockfile
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc      2525 Jun  4 09:33 pandaJob.out
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc    986745 Jun  4 09:36 agis_schedconf.cvmfs.json
[2025-06-04 13:25:59] drwx------. 4 boinc boinc      4096 Jun  4 09:36 pilot3
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc 176296486 Jun  4 13:24 HITS.45006595._038323.pool.root.1
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc       531 Jun  4 13:24 boinc_task_state.xml
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc        95 Jun  4 13:25 pilot_heartbeat.json
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc      1013 Jun  4 13:25 memory_monitor_summary.json
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc   1603667 Jun  4 13:25 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc    383738 Jun  4 13:25 log.45006595._038323.job.log.tgz.1
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc      7687 Jun  4 13:25 heartbeat.json
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc      8192 Jun  4 13:25 boinc_mmap_file
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc        28 Jun  4 13:25 wrapper_checkpoint.txt
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc      4539 Jun  4 13:25 pilotlog.txt
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc   1168559 Jun  4 13:25 log.45006595._038323.job.log.1
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc       357 Jun  4 13:25 output.list
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc       620 Jun  4 13:25 runtime_log
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc   1566720 Jun  4 13:25 result.tar.gz
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc      8659 Jun  4 13:25 runtime_log.err
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc       657 Jun  4 13:25 m2aKDmGRjg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmE0kKDmfAYHqn.diag
[2025-06-04 13:25:59] -rw-r--r--. 1 boinc boinc     20517 Jun  4 13:25 stderr.txt
[2025-06-04 13:25:59] HITS file was successfully produced:
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc 176296486 Jun  4 13:24 shared/HITS.pool.root.1
[2025-06-04 13:25:59]  *** Contents of shared directory: ***
[2025-06-04 13:25:59] total 382708
[2025-06-04 13:25:59] -rw-r--r--. 2 boinc boinc 213494990 Jun  4 09:32 ATLAS.root_0
[2025-06-04 13:25:59] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:32 start_atlas.sh
[2025-06-04 13:25:59] -rw-r--r--. 2 boinc boinc    508881 Jun  4 09:32 input.tar.gz
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc 176296486 Jun  4 13:24 HITS.pool.root.1
[2025-06-04 13:25:59] -rw-------. 1 boinc boinc   1566720 Jun  4 13:25 result.tar.gz
13:26:01 (31301): run_atlas exited; CPU time 49242.867955
13:26:01 (31301): called boinc_finish(0)

</stderr_txt>
]]>

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