Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:27:53 (5263): wrapper (7.7.26015): starting
14:27:53 (5263): wrapper: running run_atlas (--nthreads 10)
[2025-06-03 14:27:53] Arguments: --nthreads 10
[2025-06-03 14:27:53] Threads: 10
[2025-06-03 14:27:53] Checking for CVMFS
[2025-06-03 14:27:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 14:27:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 14:27:54] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 14:27:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 14:27:55] 2.11.2.0 13662 107611 205784 146752 3 334 10797444 18432000 13313 130560 0 487603624 99.084 987152928 35513 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 14:27:55] CVMFS is ok
[2025-06-03 14:27:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 14:27:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 14:27:55] Further information can be found at the LHC@home message board.
[2025-06-03 14:27:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 14:27:55] Checking for apptainer binary...
[2025-06-03 14:27:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 14:27:55] Running /usr/bin/apptainer --version
[2025-06-03 14:27:55] apptainer version 1.3.2-1.el7
[2025-06-03 14:27:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 14:27:57] c-210-25.aglt2.org
[2025-06-03 14:27:57] apptainer works
[2025-06-03 14:27:57] Set ATHENA_PROC_NUMBER=10
[2025-06-03 14:27:57] Set ATHENA_CORE_NUMBER=10
[2025-06-03 14:27:58] Starting ATLAS job with PandaID=6677658306
[2025-06-03 14:27:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 17:56:59]  *** The last 200 lines of the pilot log: ***
[2025-06-03 17:56:59] 2025-06-03 21:56:45,174 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 17:56:59] 2025-06-03 21:56:45,174 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6677658306/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 17:56:59] 2025-06-03 21:56:45,175 | INFO     | extracted standard info from prmon json
[2025-06-03 17:56:59] 2025-06-03 21:56:45,175 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 17:56:59] 2025-06-03 21:56:45,175 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 17:56:59] 2025-06-03 21:56:45,176 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 17:56:59] 2025-06-03 21:56:45,176 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 17:56:59] 2025-06-03 21:56:45,180 | INFO     | fitting pss+swap vs Time
[2025-06-03 17:56:59] 2025-06-03 21:56:45,181 | INFO     | sum of square deviations: 2632475348.6470494
[2025-06-03 17:56:59] 2025-06-03 21:56:45,182 | INFO     | sum of deviations: 16957191334.764698
[2025-06-03 17:56:59] 2025-06-03 21:56:45,182 | INFO     | mean x: 1748981580.6764705
[2025-06-03 17:56:59] 2025-06-03 21:56:45,182 | INFO     | mean y: 2541979.9509803923
[2025-06-03 17:56:59] 2025-06-03 21:56:45,182 | INFO     | -- intersect: -11263590225.1436
[2025-06-03 17:56:59] 2025-06-03 21:56:45,183 | INFO     | intersect: -11263590225.1436
[2025-06-03 17:56:59] 2025-06-03 21:56:45,183 | INFO     | chi2: 2.630906903458159
[2025-06-03 17:56:59] 2025-06-03 21:56:45,183 | INFO     | sum of square deviations: 2443626973.4874425
[2025-06-03 17:56:59] 2025-06-03 21:56:45,185 | INFO     | sum of deviations: 30551203317.914562
[2025-06-03 17:56:59] 2025-06-03 21:56:45,185 | INFO     | mean x: 1748981428.1809046
[2025-06-03 17:56:59] 2025-06-03 21:56:45,185 | INFO     | mean y: 2552727.030150754
[2025-06-03 17:56:59] 2025-06-03 21:56:45,185 | INFO     | -- intersect: -21863913714.59427
[2025-06-03 17:56:59] 2025-06-03 21:56:45,185 | INFO     | intersect: -21863913714.59427
[2025-06-03 17:56:59] 2025-06-03 21:56:45,186 | INFO     | chi2: 1.8156282796177416
[2025-06-03 17:56:59] 2025-06-03 21:56:45,186 | INFO     | current chi2=1.8156282796177416 (change=30.988501446736322 %)
[2025-06-03 17:56:59] 2025-06-03 21:56:45,186 | INFO     | sum of square deviations: 2264034585.8195815
[2025-06-03 17:56:59] 2025-06-03 21:56:45,187 | INFO     | sum of deviations: 29533166525.7835
[2025-06-03 17:56:59] 2025-06-03 21:56:45,187 | INFO     | mean x: 1748981275.685567
[2025-06-03 17:56:59] 2025-06-03 21:56:45,188 | INFO     | mean y: 2551862.4226804124
[2025-06-03 17:56:59] 2025-06-03 21:56:45,188 | INFO     | -- intersect: -22812009182.191715
[2025-06-03 17:56:59] 2025-06-03 21:56:45,188 | INFO     | intersect: -22812009182.191715
[2025-06-03 17:56:59] 2025-06-03 21:56:45,188 | INFO     | chi2: 1.8170155568388837
[2025-06-03 17:56:59] 2025-06-03 21:56:45,188 | INFO     | current chi2=1.8170155568388837 (change=-0.07640755746733265 %)
[2025-06-03 17:56:59] 2025-06-03 21:56:45,188 | INFO     | right removable region: 193
[2025-06-03 17:56:59] 2025-06-03 21:56:45,189 | INFO     | sum of square deviations: 2443605013.4874425
[2025-06-03 17:56:59] 2025-06-03 21:56:45,190 | INFO     | sum of deviations: -19965625795.934677
[2025-06-03 17:56:59] 2025-06-03 21:56:45,190 | INFO     | mean x: 1748981733.1809046
[2025-06-03 17:56:59] 2025-06-03 21:56:45,190 | INFO     | mean y: 2571527.8592964825
[2025-06-03 17:56:59] 2025-06-03 21:56:45,190 | INFO     | -- intersect: 14292734879.08728
[2025-06-03 17:56:59] 2025-06-03 21:56:45,191 | INFO     | intersect: 14292734879.08728
[2025-06-03 17:56:59] 2025-06-03 21:56:45,191 | INFO     | chi2: 0.9770043381585203
[2025-06-03 17:56:59] 2025-06-03 21:56:45,191 | INFO     | current chi2=0.9770043381585203 (change=62.86435157115173 %)
[2025-06-03 17:56:59] 2025-06-03 21:56:45,191 | INFO     | sum of square deviations: 2263990665.8195815
[2025-06-03 17:56:59] 2025-06-03 21:56:45,193 | INFO     | sum of deviations: -29322329663.71134
[2025-06-03 17:56:59] 2025-06-03 21:56:45,193 | INFO     | mean x: 1748981885.685567
[2025-06-03 17:56:59] 2025-06-03 21:56:45,193 | INFO     | mean y: 2579473.1030927836
[2025-06-03 17:56:59] 2025-06-03 21:56:45,193 | INFO     | -- intersect: 22654715015.087063
[2025-06-03 17:56:59] 2025-06-03 21:56:45,193 | INFO     | intersect: 22654715015.087063
[2025-06-03 17:56:59] 2025-06-03 21:56:45,194 | INFO     | chi2: 0.8861919908809691
[2025-06-03 17:56:59] 2025-06-03 21:56:45,194 | INFO     | current chi2=0.8861919908809691 (change=9.294978919818956 %)
[2025-06-03 17:56:59] 2025-06-03 21:56:45,194 | INFO     | left removable region: 20
[2025-06-03 17:56:59] 2025-06-03 21:56:45,194 | INFO     | sum of square deviations: 1605475015.9190793
[2025-06-03 17:56:59] 2025-06-03 21:56:45,195 | INFO     | sum of deviations: -11641874380.867058
[2025-06-03 17:56:59] 2025-06-03 21:56:45,195 | INFO     | mean x: 1748981855.2023122
[2025-06-03 17:56:59] 2025-06-03 21:56:45,195 | INFO     | mean y: 2588354.167630058
[2025-06-03 17:56:59] 2025-06-03 21:56:45,196 | INFO     | -- intersect: 12685082227.188082
[2025-06-03 17:56:59] 2025-06-03 21:56:45,196 | INFO     | intersect: 12685082227.188082
[2025-06-03 17:56:59] 2025-06-03 21:56:45,196 | INFO     | chi2: 0.040540154885669644
[2025-06-03 17:56:59] 2025-06-03 21:56:45,196 | INFO     | -- intersect: 12685082227.188082
[2025-06-03 17:56:59] 2025-06-03 21:56:45,196 | INFO     | current memory leak: -7.25 B/s (using 173 data points, chi2=0.04)
[2025-06-03 17:56:59] 2025-06-03 21:56:45,197 | INFO     | ..............................
[2025-06-03 17:56:59] 2025-06-03 21:56:45,197 | INFO     | . Timing measurements:
[2025-06-03 17:56:59] 2025-06-03 21:56:45,197 | INFO     | . get job = 0 s
[2025-06-03 17:56:59] 2025-06-03 21:56:45,197 | INFO     | . initial setup = 3 s
[2025-06-03 17:56:59] 2025-06-03 21:56:45,197 | INFO     | . payload setup = 32 s
[2025-06-03 17:56:59] 2025-06-03 21:56:45,198 | INFO     | . stage-in = 0 s
[2025-06-03 17:56:59] 2025-06-03 21:56:45,198 | INFO     | . payload execution = 12421 s
[2025-06-03 17:56:59] 2025-06-03 21:56:45,198 | INFO     | . stage-out = 2 s
[2025-06-03 17:56:59] 2025-06-03 21:56:45,198 | INFO     | . log creation = 0 s
[2025-06-03 17:56:59] 2025-06-03 21:56:45,198 | INFO     | ..............................
[2025-06-03 17:56:59] 2025-06-03 21:56:45,306 | INFO     | 
[2025-06-03 17:56:59] 2025-06-03 21:56:45,306 | INFO     | job summary report
[2025-06-03 17:56:59] 2025-06-03 21:56:45,306 | INFO     | --------------------------------------------------
[2025-06-03 17:56:59] 2025-06-03 21:56:45,306 | INFO     | PanDA job id: 6677658306
[2025-06-03 17:56:59] 2025-06-03 21:56:45,306 | INFO     | task id: 45006595
[2025-06-03 17:56:59] 2025-06-03 21:56:45,306 | INFO     | errors: (none)
[2025-06-03 17:56:59] 2025-06-03 21:56:45,306 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 17:56:59] 2025-06-03 21:56:45,307 | INFO     | pilot state: finished 
[2025-06-03 17:56:59] 2025-06-03 21:56:45,307 | INFO     | transexitcode: 0
[2025-06-03 17:56:59] 2025-06-03 21:56:45,307 | INFO     | exeerrorcode: 0
[2025-06-03 17:56:59] 2025-06-03 21:56:45,307 | INFO     | exeerrordiag: 
[2025-06-03 17:56:59] 2025-06-03 21:56:45,307 | INFO     | exitcode: 0
[2025-06-03 17:56:59] 2025-06-03 21:56:45,307 | INFO     | exitmsg: OK
[2025-06-03 17:56:59] 2025-06-03 21:56:45,307 | INFO     | cpuconsumptiontime: 45216 s
[2025-06-03 17:56:59] 2025-06-03 21:56:45,307 | INFO     | nevents: 400
[2025-06-03 17:56:59] 2025-06-03 21:56:45,307 | INFO     | neventsw: 0
[2025-06-03 17:56:59] 2025-06-03 21:56:45,307 | INFO     | pid: 19139
[2025-06-03 17:56:59] 2025-06-03 21:56:45,308 | INFO     | pgrp: 19139
[2025-06-03 17:56:59] 2025-06-03 21:56:45,308 | INFO     | corecount: 10
[2025-06-03 17:56:59] 2025-06-03 21:56:45,308 | INFO     | event service: False
[2025-06-03 17:56:59] 2025-06-03 21:56:45,308 | INFO     | sizes: {0: 2404356, 1: 2405212, 2: 2405212, 10: 2405446, 12: 2405474, 12457: 2435265, 12460: 2444206, 12462: 2444262, 12473: 2444460}
[2025-06-03 17:56:59] 2025-06-03 21:56:45,308 | INFO     | --------------------------------------------------
[2025-06-03 17:56:59] 2025-06-03 21:56:45,308 | INFO     | 
[2025-06-03 17:56:59] 2025-06-03 21:56:45,308 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-03 17:56:59] 2025-06-03 21:56:45,333 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,333 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,333 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,333 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,333 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,333 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,333 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,333 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,334 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,334 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,334 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,334 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,334 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,334 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,334 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,334 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,334 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,334 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 17:56:59] 2025-06-03 21:56:45,335 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,335 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 17:56:59] 2025-06-03 21:56:45,335 | INFO     | job 6677658306 has completed (purged errors)
[2025-06-03 17:56:59] 2025-06-03 21:56:45,335 | INFO     | overall cleanup function is called
[2025-06-03 17:56:59] 2025-06-03 21:56:46,343 | INFO     | --- collectZombieJob: --- 10, [19139]
[2025-06-03 17:56:59] 2025-06-03 21:56:46,344 | INFO     | zombie collector waiting for pid 19139
[2025-06-03 17:56:59] 2025-06-03 21:56:46,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 17:56:59] 2025-06-03 21:56:46,344 | INFO     | collected zombie processes
[2025-06-03 17:56:59] 2025-06-03 21:56:46,344 | INFO     | will attempt to kill all subprocesses of pid=19139
[2025-06-03 17:56:59] 2025-06-03 21:56:46,647 | INFO     | process IDs to be killed: [19139] (in reverse order)
[2025-06-03 17:56:59] 2025-06-03 21:56:46,789 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 17:56:59] 2025-06-03 21:56:46,789 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 17:56:59] 2025-06-03 21:56:46,796 | INFO     | did not find any defunct processes belonging to 19139
[2025-06-03 17:56:59] 2025-06-03 21:56:46,803 | INFO     | did not find any defunct processes belonging to 19139
[2025-06-03 17:56:59] 2025-06-03 21:56:46,803 | INFO     | ready for new job
[2025-06-03 17:56:59] 2025-06-03 21:56:46,803 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 17:56:59] 2025-06-03 21:56:46,805 | INFO     | **************************************
[2025-06-03 17:56:59] 2025-06-03 21:56:46,805 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 17:56:59] 2025-06-03 21:56:46,805 | INFO     | **************************************
[2025-06-03 17:56:59] 2025-06-03 21:56:46,805 | INFO     | 
[2025-06-03 17:56:59] 2025-06-03 21:56:46,806 | INFO     | architecture information:
[2025-06-03 17:56:59] 2025-06-03 21:56:46,807 | INFO     | executing command: cat /etc/os-release
[2025-06-03 17:56:59] 2025-06-03 21:56:46,820 | INFO     | cat /etc/os-release:
[2025-06-03 17:56:59] NAME="CentOS Linux"
[2025-06-03 17:56:59] VERSION="7 (Core)"
[2025-06-03 17:56:59] ID="centos"
[2025-06-03 17:56:59] ID_LIKE="rhel fedora"
[2025-06-03 17:56:59] VERSION_ID="7"
[2025-06-03 17:56:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 17:56:59] ANSI_COLOR="0;31"
[2025-06-03 17:56:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 17:56:59] HOME_URL="https://www.centos.org/"
[2025-06-03 17:56:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 17:56:59] 
[2025-06-03 17:56:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 17:56:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 17:56:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 17:56:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 17:56:59] 
[2025-06-03 17:56:59] 2025-06-03 21:56:46,820 | INFO     | **************************************
[2025-06-03 17:56:59] 2025-06-03 21:56:47,322 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-03 17:56:59] 2025-06-03 21:56:47,337 | INFO     | sufficient remaining disk space (57187237888 B)
[2025-06-03 17:56:59] 2025-06-03 21:56:47,337 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 17:56:59] 2025-06-03 21:56:47,337 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 17:56:59] 2025-06-03 21:56:47,337 | INFO     | update_server=False
[2025-06-03 17:56:59] 2025-06-03 21:56:47,337 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 17:56:59] 2025-06-03 21:56:47,439 | INFO     | all data control threads have been joined
[2025-06-03 17:56:59] 2025-06-03 21:56:47,524 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 17:56:59] 2025-06-03 21:56:47,628 | INFO     | all job control threads have been joined
[2025-06-03 17:56:59] 2025-06-03 21:56:48,157 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 17:56:59] 2025-06-03 21:56:48,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 17:56:59] 2025-06-03 21:56:48,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 17:56:59] 2025-06-03 21:56:48,189 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:56:59] 2025-06-03 21:56:48,189 | INFO     | aborting loop
[2025-06-03 17:56:59] 2025-06-03 21:56:48,343 | INFO     | [job] retrieve thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:48,432 | INFO     | [payload] failed_post thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:48,445 | INFO     | [data] control thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:48,450 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:48,634 | INFO     | [job] control thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:48,800 | INFO     | all payload control threads have been joined
[2025-06-03 17:56:59] 2025-06-03 21:56:49,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:49,097 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:49,099 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 17:56:59] 2025-06-03 21:56:49,195 | INFO     | [job] job monitor thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:49,523 | INFO     | [data] copytool_in thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:49,529 | INFO     | [data] copytool_out thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:49,746 | INFO     | [job] validate thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:49,767 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:49,780 | INFO     | [payload] validate_post thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:49,805 | INFO     | [payload] control thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:50,315 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:56:59] 2025-06-03 21:56:51,321 | INFO     | [job] queue monitor thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:53,108 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 17:56:59] 2025-06-03 21:56:53,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139671396624192)>', '<ExcThread(monitor, started 139670641956608)>']
[2025-06-03 17:56:59] 2025-06-03 21:56:54,188 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 17:56:59] 2025-06-03 21:56:54,188 | INFO     | [monitor] control thread has ended
[2025-06-03 17:56:59] 2025-06-03 21:56:58,291 | INFO     | all workflow threads have been joined
[2025-06-03 17:56:59] 2025-06-03 21:56:58,295 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 17:56:59] 2025-06-03 21:56:58,296 | INFO     | traces error code: 0
[2025-06-03 17:56:59] 2025-06-03 21:56:58,296 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 17:56:59] 2025-06-03 21:56:58,771 [wrapper] ==== pilot stdout END ====
[2025-06-03 17:56:59] 2025-06-03 21:56:58,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 17:56:59] 2025-06-03 21:56:58,777 [wrapper] pilotpid: 9062
[2025-06-03 17:56:59] 2025-06-03 21:56:58,780 [wrapper] Pilot exit status: 0
[2025-06-03 17:56:59] 2025-06-03 21:56:58,798 [wrapper] pandaids: 6677658306
[2025-06-03 17:56:59] 2025-06-03 21:56:58,891 [wrapper] cleanup supervisor_pilot 14414 9063
[2025-06-03 17:56:59] 2025-06-03 21:56:58,895 [wrapper] Test setup, not cleaning
[2025-06-03 17:56:59] 2025-06-03 21:56:58,898 [wrapper] apfmon messages muted
[2025-06-03 17:56:59] 2025-06-03 21:56:58,901 [wrapper] ==== wrapper stdout END ====
[2025-06-03 17:56:59] 2025-06-03 21:56:58,904 [wrapper] ==== wrapper stderr END ====
[2025-06-03 17:56:59]  *** Error codes and diagnostics ***
[2025-06-03 17:56:59]     "exeErrorCode": 0,
[2025-06-03 17:56:59]     "exeErrorDiag": "",
[2025-06-03 17:56:59]     "pilotErrorCode": 0,
[2025-06-03 17:56:59]     "pilotErrorDiag": "",
[2025-06-03 17:56:59]  *** Listing of results directory ***
[2025-06-03 17:56:59] total 388988
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 10:09 pilot3.tar.gz
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 10:19 queuedata.json
[2025-06-03 17:56:59] -rwx------ 1 boincer umatlas     37140 Jun  3 10:19 runpilot2-wrapper.sh
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas       100 Jun  3 14:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 17:56:59] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 14:27 run_atlas
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas       105 Jun  3 14:27 job.xml
[2025-06-03 17:56:59] -rw-r--r-- 2 boincer umatlas 214876270 Jun  3 14:27 EVNT.45006593._001411.pool.root.1
[2025-06-03 17:56:59] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 14:27 start_atlas.sh
[2025-06-03 17:56:59] drwxrwx--x 2 boincer umatlas      4096 Jun  3 14:27 shared
[2025-06-03 17:56:59] -rw-r--r-- 2 boincer umatlas    508879 Jun  3 14:27 input.tar.gz
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas         0 Jun  3 14:27 boinc_lockfile
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 14:27 pandaJob.out
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas    986893 Jun  3 14:28 agis_schedconf.cvmfs.json
[2025-06-03 17:56:59] drwx------ 4 boincer umatlas      4096 Jun  3 14:28 pilot3
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas      6229 Jun  3 17:55 init_data.xml
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas 176660854 Jun  3 17:55 HITS.45006595._035104.pool.root.1
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas       530 Jun  3 17:55 boinc_task_state.xml
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas        95 Jun  3 17:56 pilot_heartbeat.json
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas      1056 Jun  3 17:56 memory_monitor_summary.json
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas   1603667 Jun  3 17:56 agis_ddmendpoints.agis.ALL.json
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas    408660 Jun  3 17:56 log.45006595._035104.job.log.tgz.1
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 17:56 boinc_mmap_file
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas        28 Jun  3 17:56 wrapper_checkpoint.txt
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas      7751 Jun  3 17:56 heartbeat.json
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas      4353 Jun  3 17:56 pilotlog.txt
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas   1062085 Jun  3 17:56 log.45006595._035104.job.log.1
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas       357 Jun  3 17:56 output.list
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas       620 Jun  3 17:56 runtime_log
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas   1495040 Jun  3 17:56 result.tar.gz
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas      8662 Jun  3 17:56 runtime_log.err
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas       661 Jun  3 17:56 ONJLDm0ehg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmbsYKDmbQVXCo.diag
[2025-06-03 17:56:59] -rw-r--r-- 1 boincer umatlas     20899 Jun  3 17:56 stderr.txt
[2025-06-03 17:56:59] HITS file was successfully produced:
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas 176660854 Jun  3 17:55 shared/HITS.pool.root.1
[2025-06-03 17:56:59]  *** Contents of shared directory: ***
[2025-06-03 17:56:59] total 384352
[2025-06-03 17:56:59] -rw-r--r-- 2 boincer umatlas 214876270 Jun  3 14:27 ATLAS.root_0
[2025-06-03 17:56:59] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 14:27 start_atlas.sh
[2025-06-03 17:56:59] -rw-r--r-- 2 boincer umatlas    508879 Jun  3 14:27 input.tar.gz
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas 176660854 Jun  3 17:55 HITS.pool.root.1
[2025-06-03 17:56:59] -rw------- 1 boincer umatlas   1495040 Jun  3 17:56 result.tar.gz
17:57:01 (5263): run_atlas exited; CPU time 45574.625972
17:57:01 (5263): called boinc_finish(0)

</stderr_txt>
]]>

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