Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:26:32 (1787886): wrapper (7.7.26015): starting
11:26:32 (1787886): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:26:32] Arguments: --nthreads 8
[2025-06-03 11:26:32] Threads: 8
[2025-06-03 11:26:32] Checking for CVMFS
[2025-06-03 11:26:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:26:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:26:33] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:26:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:26:35] 2.11.3.0 153215 401508 226032 146752 2 278 43166845 45568000 13965 130560 0 1828410134 99.758 1497062727 20408 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-06-03 11:26:35] CVMFS is ok
[2025-06-03 11:26:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 11:26:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 11:26:35] Further information can be found at the LHC@home message board.
[2025-06-03 11:26:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:26:35] Checking for apptainer binary...
[2025-06-03 11:26:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:26:35] Running /usr/bin/apptainer --version
[2025-06-03 11:26:35] apptainer version 1.3.3-1.el9
[2025-06-03 11:26:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:26:36] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0018.triumf.lcg
[2025-06-03 11:26:36] apptainer works
[2025-06-03 11:26:37] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:26:37] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:26:37] Starting ATLAS job with PandaID=6677862167
[2025-06-03 11:26:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 11:32:06]  *** The last 200 lines of the pilot log: ***
[2025-06-03 11:32:06] 2025-06-03 18:31:51,955 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6677862167/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | INFO     | extracted standard info from prmon json
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:32:06] 2025-06-03 18:31:51,957 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:32:06] 2025-06-03 18:31:51,957 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | WARNING  | wrong length of table data, x=[1748975335.0], y=[1638.0] (must be same and length>=4)
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | ..............................
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . Timing measurements:
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . get job = 0 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . initial setup = 5 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . payload setup = 24 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . stage-in = 0 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . payload execution = 55 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . stage-out = 2 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,959 | INFO     | . log creation = 0 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,959 | INFO     | ..............................
[2025-06-03 11:32:06] 2025-06-03 18:31:51,959 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 11:32:06] 2025-06-03 18:31:51,979 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677862167/pilotlog.txt
[2025-06-03 11:32:06] 2025-06-03 18:31:51,993 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-03 11:32:06] - Log from pilotlog.txt -
[2025-06-03 11:32:06] 2025-06-03 18:31:51,955 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6677862167/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | INFO     | extracted standard info from prmon json
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:32:06] 2025-06-03 18:31:51,957 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:32:06] 2025-06-03 18:31:51,957 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | WARNING  | wrong length of table data, x=[1748975335.0], y=[1638.0] (must be same and length>=4)
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | ..............................
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . Timing measurements:
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . get job = 0 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . initial setup = 5 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . payload setup = 24 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . stage-in = 0 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . payload execution = 55 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . stage-out = 2 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,959 | INFO     | . log creation = 0 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,959 | INFO     | ..............................
[2025-06-03 11:32:06] 2025-06-03 18:31:51,959 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 11:32:06] 2025-06-03 18:31:51,979 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677862167/pilotlog.txt
[2025-06-03 11:32:06] 2025-06-03 18:31:51,994 | WARNING  | 
[2025-06-03 11:32:06] [begin log extracts]
[2025-06-03 11:32:06] - Log from pilotlog.txt -
[2025-06-03 11:32:06] 2025-06-03 18:31:51,955 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6677862167/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | INFO     | extracted standard info from prmon json
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 11:32:06] 2025-06-03 18:31:51,956 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 11:32:06] 2025-06-03 18:31:51,957 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 11:32:06] 2025-06-03 18:31:51,957 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | WARNING  | wrong length of table data, x=[1748975335.0], y=[1638.0] (must be same and length>=4)
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | ..............................
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . Timing measurements:
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . get job = 0 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . initial setup = 5 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . payload setup = 24 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . stage-in = 0 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . payload execution = 55 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,958 | INFO     | . stage-out = 2 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,959 | INFO     | . log creation = 0 s
[2025-06-03 11:32:06] 2025-06-03 18:31:51,959 | INFO     | ..............................
[2025-06-03 11:32:06] 2025-06-03 18:31:51,959 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 11:32:06] 2025-06-03 18:31:51,979 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6677862167/pilotlog.txt
[2025-06-03 11:32:06] [end log extracts]
[2025-06-03 11:32:06] 2025-06-03 18:31:51,994 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-03 11:32:06] 2025-06-03 18:31:51,994 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-03 11:32:06] 2025-06-03 18:31:52,067 | INFO     | 
[2025-06-03 11:32:06] 2025-06-03 18:31:52,067 | INFO     | job summary report
[2025-06-03 11:32:06] 2025-06-03 18:31:52,067 | INFO     | --------------------------------------------------
[2025-06-03 11:32:06] 2025-06-03 18:31:52,067 | INFO     | PanDA job id: 6677862167
[2025-06-03 11:32:06] 2025-06-03 18:31:52,067 | INFO     | task id: 45006595
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-03 11:29:28,885 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | pilot state: failed 
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | transexitcode: 65
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | exeerrorcode: 65
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | exitcode: 65
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | cpuconsumptiontime: 18 s
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | nevents: 0
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | neventsw: 0
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | pid: 1797807
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | pgrp: 1797807
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | corecount: 8
[2025-06-03 11:32:06] 2025-06-03 18:31:52,068 | INFO     | event service: False
[2025-06-03 11:32:06] 2025-06-03 18:31:52,069 | INFO     | sizes: {0: 2404954, 1: 2405209, 12: 2405209, 23: 2405237, 24: 2405471, 35: 2405499, 84: 2428944, 89: 2433179, 90: 2433207, 218: 2433349}
[2025-06-03 11:32:06] 2025-06-03 18:31:52,069 | INFO     | --------------------------------------------------
[2025-06-03 11:32:06] 2025-06-03 18:31:52,069 | INFO     | 
[2025-06-03 11:32:06] 2025-06-03 18:31:52,069 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-03 11:32:06] 2025-06-03 18:31:52,087 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,088 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,088 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,088 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,088 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,088 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,088 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,088 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,088 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,088 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,088 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,089 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,089 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,089 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,089 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,089 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,089 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 11:32:06] 2025-06-03 18:31:52,089 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,089 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 11:32:06] 2025-06-03 18:31:52,089 | INFO     | job 6677862167 has completed (purged errors)
[2025-06-03 11:32:06] 2025-06-03 18:31:52,089 | INFO     | overall cleanup function is called
[2025-06-03 11:32:06] 2025-06-03 18:31:53,097 | INFO     | --- collectZombieJob: --- 10, [1797807]
[2025-06-03 11:32:06] 2025-06-03 18:31:53,097 | INFO     | zombie collector waiting for pid 1797807
[2025-06-03 11:32:06] 2025-06-03 18:31:53,097 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 11:32:06] 2025-06-03 18:31:53,098 | INFO     | collected zombie processes
[2025-06-03 11:32:06] 2025-06-03 18:31:53,098 | INFO     | will attempt to kill all subprocesses of pid=1797807
[2025-06-03 11:32:06] 2025-06-03 18:31:53,692 | INFO     | process IDs to be killed: [1797807] (in reverse order)
[2025-06-03 11:32:06] 2025-06-03 18:31:53,776 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 11:32:06] 2025-06-03 18:31:53,777 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 11:32:06] 2025-06-03 18:31:53,806 | INFO     | did not find any defunct processes belonging to 1797807
[2025-06-03 11:32:06] 2025-06-03 18:31:53,863 | INFO     | did not find any defunct processes belonging to 1797807
[2025-06-03 11:32:06] 2025-06-03 18:31:53,863 | INFO     | ready for new job
[2025-06-03 11:32:06] 2025-06-03 18:31:53,863 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 11:32:06] 2025-06-03 18:31:53,864 | INFO     | **************************************
[2025-06-03 11:32:06] 2025-06-03 18:31:53,865 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 11:32:06] 2025-06-03 18:31:53,865 | INFO     | **************************************
[2025-06-03 11:32:06] 2025-06-03 18:31:53,865 | INFO     | 
[2025-06-03 11:32:06] 2025-06-03 18:31:53,886 | INFO     | architecture information:
[2025-06-03 11:32:06] 2025-06-03 18:31:53,887 | INFO     | executing command: cat /etc/os-release
[2025-06-03 11:32:06] 2025-06-03 18:31:53,945 | INFO     | cat /etc/os-release:
[2025-06-03 11:32:06] NAME="CentOS Linux"
[2025-06-03 11:32:06] VERSION="7 (Core)"
[2025-06-03 11:32:06] ID="centos"
[2025-06-03 11:32:06] ID_LIKE="rhel fedora"
[2025-06-03 11:32:06] VERSION_ID="7"
[2025-06-03 11:32:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 11:32:06] ANSI_COLOR="0;31"
[2025-06-03 11:32:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 11:32:06] HOME_URL="https://www.centos.org/"
[2025-06-03 11:32:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 11:32:06] 
[2025-06-03 11:32:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 11:32:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 11:32:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 11:32:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 11:32:06] 
[2025-06-03 11:32:06] 2025-06-03 18:31:53,945 | INFO     | **************************************
[2025-06-03 11:32:06] 2025-06-03 18:31:54,449 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-03 11:32:06] 2025-06-03 18:31:54,470 | INFO     | sufficient remaining disk space (1268082802688 B)
[2025-06-03 11:32:06] 2025-06-03 18:31:54,471 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 11:32:06] 2025-06-03 18:31:54,471 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 11:32:06] 2025-06-03 18:31:54,471 | INFO     | update_server=False
[2025-06-03 11:32:06] 2025-06-03 18:31:54,471 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 11:32:06] 2025-06-03 18:31:54,471 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 11:32:06] 2025-06-03 18:31:54,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:32:06] 2025-06-03 18:31:54,831 | INFO     | aborting loop
[2025-06-03 11:32:06] 2025-06-03 18:31:55,193 | INFO     | all data control threads have been joined
[2025-06-03 11:32:06] 2025-06-03 18:31:55,398 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 11:32:06] 2025-06-03 18:31:55,399 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 11:32:06] 2025-06-03 18:31:55,399 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 11:32:06] 2025-06-03 18:31:55,458 | INFO     | all payload control threads have been joined
[2025-06-03 11:32:06] 2025-06-03 18:31:55,479 | INFO     | [job] retrieve thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:55,802 | INFO     | all job control threads have been joined
[2025-06-03 11:32:06] 2025-06-03 18:31:55,837 | INFO     | [job] job monitor thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:55,936 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:55,982 | INFO     | [job] validate thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:56,026 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:56,087 | INFO     | [payload] validate_post thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:56,218 | INFO     | [data] control thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:56,465 | INFO     | [payload] control thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:56,488 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 11:32:06] 2025-06-03 18:31:56,489 | INFO     | [data] copytool_out thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:56,680 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:56,742 | INFO     | [data] copytool_in thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:56,770 | INFO     | [payload] failed_post thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:56,808 | INFO     | [job] control thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:56,937 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:31:57,081 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 11:32:06] 2025-06-03 18:31:58,086 | INFO     | [job] queue monitor thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:32:00,498 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 11:32:06] 2025-06-03 18:32:01,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663062374208)>', '<ExcThread(monitor, started 139661791979264)>']
[2025-06-03 11:32:06] 2025-06-03 18:32:01,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 11:32:06] 2025-06-03 18:32:01,434 | INFO     | [monitor] control thread has ended
[2025-06-03 11:32:06] 2025-06-03 18:32:06,310 | INFO     | all workflow threads have been joined
[2025-06-03 11:32:06] 2025-06-03 18:32:06,311 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 11:32:06] 2025-06-03 18:32:06,311 | INFO     | traces error code: 0
[2025-06-03 11:32:06] 2025-06-03 18:32:06,311 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 11:32:06] 2025-06-03 18:32:06,554 [wrapper] ==== pilot stdout END ====
[2025-06-03 11:32:06] 2025-06-03 18:32:06,581 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 11:32:06] 2025-06-03 18:32:06,586 [wrapper] pilotpid: 1791466
[2025-06-03 11:32:06] 2025-06-03 18:32:06,588 [wrapper] Pilot exit status: 0
[2025-06-03 11:32:06] 2025-06-03 18:32:06,608 [wrapper] pandaids: 6677862167
[2025-06-03 11:32:06] 2025-06-03 18:32:06,649 [wrapper] cleanup supervisor_pilot 1791472 1791467
[2025-06-03 11:32:06] 2025-06-03 18:32:06,651 [wrapper] Test setup, not cleaning
[2025-06-03 11:32:06] 2025-06-03 18:32:06,652 [wrapper] apfmon messages muted
[2025-06-03 11:32:06] 2025-06-03 18:32:06,654 [wrapper] ==== wrapper stdout END ====
[2025-06-03 11:32:06] 2025-06-03 18:32:06,656 [wrapper] ==== wrapper stderr END ====
[2025-06-03 11:32:06]  *** Error codes and diagnostics ***
[2025-06-03 11:32:06]     "exeErrorCode": 65,
[2025-06-03 11:32:06]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 11:32:06]     "pilotErrorCode": 1305,
[2025-06-03 11:32:06]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 11:32:06]  *** Listing of results directory ***
[2025-06-03 11:32:06] total 212772
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc    495897 Jun  3 09:58 pilot3.tar.gz
[2025-06-03 11:32:06] -rwx------. 1 boinc boinc     37140 Jun  3 10:22 runpilot2-wrapper.sh
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc      5111 Jun  3 10:22 queuedata.json
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc       100 Jun  3 11:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 11:32:06] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 11:26 run_atlas
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc       105 Jun  3 11:26 job.xml
[2025-06-03 11:32:06] -rw-r--r--. 2 boinc boinc 213836732 Jun  3 11:26 EVNT.45006593._001615.pool.root.1
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc      6453 Jun  3 11:26 init_data.xml
[2025-06-03 11:32:06] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:26 start_atlas.sh
[2025-06-03 11:32:06] drwxrwx--x. 2 boinc boinc      4096 Jun  3 11:26 shared
[2025-06-03 11:32:06] -rw-r--r--. 2 boinc boinc    508879 Jun  3 11:26 input.tar.gz
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc         0 Jun  3 11:26 boinc_lockfile
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc      2525 Jun  3 11:26 pandaJob.out
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc    986893 Jun  3 11:27 agis_schedconf.cvmfs.json
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc   1603667 Jun  3 11:27 agis_ddmendpoints.agis.ALL.json
[2025-06-03 11:32:06] drwx------. 4 boinc boinc      4096 Jun  3 11:27 pilot3
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc       524 Jun  3 11:29 boinc_task_state.xml
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc       951 Jun  3 11:29 memory_monitor_summary.json
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc     21669 Jun  3 11:29 log.45006595._040303.job.log.tgz.1
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc        95 Jun  3 11:31 pilot_heartbeat.json
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc      8320 Jun  3 11:31 heartbeat.json
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc        23 Jun  3 11:32 wrapper_checkpoint.txt
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc      8192 Jun  3 11:32 boinc_mmap_file
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc      4352 Jun  3 11:32 pilotlog.txt
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc     79725 Jun  3 11:32 log.45006595._040303.job.log.1
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc       188 Jun  3 11:32 output.list
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc       620 Jun  3 11:32 runtime_log
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc    122880 Jun  3 11:32 result.tar.gz
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc      8647 Jun  3 11:32 runtime_log.err
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc       645 Jun  3 11:32 FvkKDmNWkg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmtQZKDmOnOzum.diag
[2025-06-03 11:32:06] -rw-r--r--. 1 boinc boinc     21768 Jun  3 11:32 stderr.txt
[2025-06-03 11:32:06] No HITS result produced
[2025-06-03 11:32:06]  *** Contents of shared directory: ***
[2025-06-03 11:32:06] total 209468
[2025-06-03 11:32:06] -rw-r--r--. 2 boinc boinc 213836732 Jun  3 11:26 ATLAS.root_0
[2025-06-03 11:32:06] -rw-r--r--. 2 boinc boinc     15093 Jun  3 11:26 start_atlas.sh
[2025-06-03 11:32:06] -rw-r--r--. 2 boinc boinc    508879 Jun  3 11:26 input.tar.gz
[2025-06-03 11:32:06] -rw-------. 1 boinc boinc    122880 Jun  3 11:32 result.tar.gz
11:32:08 (1787886): run_atlas exited; CPU time 28.912887
11:32:08 (1787886): called boinc_finish(0)

</stderr_txt>
]]>

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