Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:59:52 (9820): wrapper (7.7.26015): starting
04:59:52 (9820): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 04:59:52] Arguments: --nthreads 8
[2025-06-04 04:59:52] Threads: 8
[2025-06-04 04:59:52] Checking for CVMFS
[2025-06-04 04:59:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:59:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:59:53] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:59:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:59:54] 2.11.2.0 22385 32821 88508 146765 1 15 16336941 25165825 4298 130560 0 18728310 99.803 20115982 2329 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 04:59:54] CVMFS is ok
[2025-06-04 04:59:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:59:54] Checking for apptainer binary...
[2025-06-04 04:59:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:59:54] Running /usr/bin/apptainer --version
[2025-06-04 04:59:54] apptainer version 1.3.2-1.el7
[2025-06-04 04:59:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:59:58] cg-vwn497.simple-grid.lan
[2025-06-04 04:59:58] apptainer works
[2025-06-04 04:59:58] Set ATHENA_PROC_NUMBER=8
[2025-06-04 04:59:58] Set ATHENA_CORE_NUMBER=8
[2025-06-04 04:59:58] Starting ATLAS job with PandaID=6677733623
[2025-06-04 04:59:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:05:40]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:05:40] 2025-06-04 06:42:00,458 | INFO     | extracted standard info from prmon json
[2025-06-04 09:05:40] 2025-06-04 06:42:00,458 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:05:40] 2025-06-04 06:42:00,458 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:05:40] 2025-06-04 06:42:00,458 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:05:40] 2025-06-04 06:42:00,458 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:05:40] 2025-06-04 06:42:00,462 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:05:40] 2025-06-04 06:42:00,463 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,465 | INFO     | sum of deviations: 80149470871.99998
[2025-06-04 09:05:40] 2025-06-04 06:42:00,465 | INFO     | mean x: 1749012933.0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,465 | INFO     | mean y: 2409532.3574879225
[2025-06-04 09:05:40] 2025-06-04 06:42:00,465 | INFO     | -- intersect: -50967557852.553635
[2025-06-04 09:05:40] 2025-06-04 06:42:00,465 | INFO     | intersect: -50967557852.553635
[2025-06-04 09:05:40] 2025-06-04 06:42:00,465 | INFO     | chi2: 6.021256769703866
[2025-06-04 09:05:40] 2025-06-04 06:42:00,466 | INFO     | sum of square deviations: 2555770710.5
[2025-06-04 09:05:40] 2025-06-04 06:42:00,477 | INFO     | sum of deviations: 92165051066.5
[2025-06-04 09:05:40] 2025-06-04 06:42:00,478 | INFO     | mean x: 1749012780.5
[2025-06-04 09:05:40] 2025-06-04 06:42:00,478 | INFO     | mean y: 2418732.787128713
[2025-06-04 09:05:40] 2025-06-04 06:42:00,478 | INFO     | -- intersect: -63069691597.175766
[2025-06-04 09:05:40] 2025-06-04 06:42:00,478 | INFO     | intersect: -63069691597.175766
[2025-06-04 09:05:40] 2025-06-04 06:42:00,478 | INFO     | chi2: 5.217177814592682
[2025-06-04 09:05:40] 2025-06-04 06:42:00,478 | INFO     | current chi2=5.217177814592682 (change=13.35400541556261 %)
[2025-06-04 09:05:40] 2025-06-04 06:42:00,478 | INFO     | right removable region: 201
[2025-06-04 09:05:40] 2025-06-04 06:42:00,479 | INFO     | sum of square deviations: 2555770710.5
[2025-06-04 09:05:40] 2025-06-04 06:42:00,480 | INFO     | sum of deviations: 11830679892.000002
[2025-06-04 09:05:40] 2025-06-04 06:42:00,480 | INFO     | mean x: 1749013085.5
[2025-06-04 09:05:40] 2025-06-04 06:42:00,480 | INFO     | mean y: 2463024.910891089
[2025-06-04 09:05:40] 2025-06-04 06:42:00,480 | INFO     | -- intersect: -8093730368.518221
[2025-06-04 09:05:40] 2025-06-04 06:42:00,481 | INFO     | intersect: -8093730368.518221
[2025-06-04 09:05:40] 2025-06-04 06:42:00,481 | INFO     | chi2: 1.6066014927168224
[2025-06-04 09:05:40] 2025-06-04 06:42:00,481 | INFO     | current chi2=1.6066014927168224 (change=73.31783788393669 %)
[2025-06-04 09:05:40] 2025-06-04 06:42:00,481 | INFO     | sum of square deviations: 2370641658.0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,483 | INFO     | sum of deviations: -11041032696.0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,483 | INFO     | mean x: 1749013238.0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,483 | INFO     | mean y: 2481680.5634517767
[2025-06-04 09:05:40] 2025-06-04 06:42:00,483 | INFO     | -- intersect: 8148340537.522266
[2025-06-04 09:05:40] 2025-06-04 06:42:00,483 | INFO     | intersect: 8148340537.522266
[2025-06-04 09:05:40] 2025-06-04 06:42:00,483 | INFO     | chi2: 0.9107390006748992
[2025-06-04 09:05:40] 2025-06-04 06:42:00,484 | INFO     | current chi2=0.9107390006748992 (change=43.3127004547465 %)
[2025-06-04 09:05:40] 2025-06-04 06:42:00,493 | INFO     | sum of square deviations: 2194675568.0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,495 | INFO     | sum of deviations: -14787443557.5
[2025-06-04 09:05:40] 2025-06-04 06:42:00,495 | INFO     | mean x: 1749013390.5
[2025-06-04 09:05:40] 2025-06-04 06:42:00,495 | INFO     | mean y: 2484905.6927083335
[2025-06-04 09:05:40] 2025-06-04 06:42:00,495 | INFO     | -- intersect: 11787113654.669815
[2025-06-04 09:05:40] 2025-06-04 06:42:00,495 | INFO     | intersect: 11787113654.669815
[2025-06-04 09:05:40] 2025-06-04 06:42:00,495 | INFO     | chi2: 0.8831582763203959
[2025-06-04 09:05:40] 2025-06-04 06:42:00,496 | INFO     | current chi2=0.8831582763203959 (change=3.0283895094055198 %)
[2025-06-04 09:05:40] 2025-06-04 06:42:00,496 | INFO     | left removable region: 30
[2025-06-04 09:05:40] 2025-06-04 06:42:00,496 | INFO     | sum of square deviations: 1550429070.0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,497 | INFO     | sum of deviations: -1018698902.0000002
[2025-06-04 09:05:40] 2025-06-04 06:42:00,497 | INFO     | mean x: 1749013665.0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,497 | INFO     | mean y: 2496380.1578947366
[2025-06-04 09:05:40] 2025-06-04 06:42:00,497 | INFO     | -- intersect: 1151673943.0621407
[2025-06-04 09:05:40] 2025-06-04 06:42:00,497 | INFO     | intersect: 1151673943.0621407
[2025-06-04 09:05:40] 2025-06-04 06:42:00,498 | INFO     | chi2: 0.0029183418140156076
[2025-06-04 09:05:40] 2025-06-04 06:42:00,498 | INFO     | -- intersect: 1151673943.0621407
[2025-06-04 09:05:40] 2025-06-04 06:42:00,498 | INFO     | current memory leak: -0.66 B/s (using 171 data points, chi2=0.00)
[2025-06-04 09:05:40] 2025-06-04 06:42:00,499 | INFO     | ..............................
[2025-06-04 09:05:40] 2025-06-04 06:42:00,499 | INFO     | . Timing measurements:
[2025-06-04 09:05:40] 2025-06-04 06:42:00,499 | INFO     | . get job = 0 s
[2025-06-04 09:05:40] 2025-06-04 06:42:00,499 | INFO     | . initial setup = 9 s
[2025-06-04 09:05:40] 2025-06-04 06:42:00,499 | INFO     | . payload setup = 139 s
[2025-06-04 09:05:40] 2025-06-04 06:42:00,499 | INFO     | . stage-in = 0 s
[2025-06-04 09:05:40] 2025-06-04 06:42:00,499 | INFO     | . payload execution = 12713 s
[2025-06-04 09:05:40] 2025-06-04 06:42:00,499 | INFO     | . stage-out = 3 s
[2025-06-04 09:05:40] 2025-06-04 06:42:00,499 | INFO     | . log creation = 1 s
[2025-06-04 09:05:40] 2025-06-04 06:42:00,499 | INFO     | ..............................
[2025-06-04 09:05:40] 2025-06-04 06:42:00,630 | INFO     | 
[2025-06-04 09:05:40] 2025-06-04 06:42:00,630 | INFO     | job summary report
[2025-06-04 09:05:40] 2025-06-04 06:42:00,630 | INFO     | --------------------------------------------------
[2025-06-04 09:05:40] 2025-06-04 06:42:00,630 | INFO     | PanDA job id: 6677733623
[2025-06-04 09:05:40] 2025-06-04 06:42:00,630 | INFO     | task id: 45006595
[2025-06-04 09:05:40] 2025-06-04 06:42:00,630 | INFO     | errors: (none)
[2025-06-04 09:05:40] 2025-06-04 06:42:00,630 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:05:40] 2025-06-04 06:42:00,630 | INFO     | pilot state: finished 
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | transexitcode: 0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | exeerrorcode: 0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | exeerrordiag: 
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | exitcode: 0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | exitmsg: OK
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | cpuconsumptiontime: 46394 s
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | nevents: 400
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | neventsw: 0
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | pid: 23367
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | pgrp: 23367
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | corecount: 8
[2025-06-04 09:05:40] 2025-06-04 06:42:00,631 | INFO     | event service: False
[2025-06-04 09:05:40] 2025-06-04 06:42:00,632 | INFO     | sizes: {0: 2405012, 1: 2405211, 12: 2405211, 22: 2405239, 33: 2405267, 44: 2405323, 54: 2405479, 65: 2405507, 76: 2405535, 87: 2405591, 95: 2405825, 97: 2406133, 1
[2025-06-04 09:05:40] 2025-06-04 06:42:00,632 | INFO     | --------------------------------------------------
[2025-06-04 09:05:40] 2025-06-04 06:42:00,632 | INFO     | 
[2025-06-04 09:05:40] 2025-06-04 06:42:00,632 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 09:05:40] 2025-06-04 06:42:01,088 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,089 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,089 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,089 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,089 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,089 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,089 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,089 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,089 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,089 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,090 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,090 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,090 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,090 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,090 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,090 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,090 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,090 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:05:40] 2025-06-04 06:42:01,090 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,090 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:05:40] 2025-06-04 06:42:01,091 | INFO     | job 6677733623 has completed (purged errors)
[2025-06-04 09:05:40] 2025-06-04 06:42:01,091 | INFO     | overall cleanup function is called
[2025-06-04 09:05:40] 2025-06-04 06:42:02,099 | INFO     | --- collectZombieJob: --- 10, [23367]
[2025-06-04 09:05:40] 2025-06-04 06:42:02,099 | INFO     | zombie collector waiting for pid 23367
[2025-06-04 09:05:40] 2025-06-04 06:42:02,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:05:40] 2025-06-04 06:42:02,099 | INFO     | collected zombie processes
[2025-06-04 09:05:40] 2025-06-04 06:42:02,100 | INFO     | will attempt to kill all subprocesses of pid=23367
[2025-06-04 09:05:40] 2025-06-04 06:42:02,201 | INFO     | process IDs to be killed: [23367] (in reverse order)
[2025-06-04 09:05:40] 2025-06-04 06:42:03,078 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:05:40] 2025-06-04 06:42:03,078 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:05:40] 2025-06-04 06:42:03,081 | INFO     | did not find any defunct processes belonging to 23367
[2025-06-04 09:05:40] 2025-06-04 06:42:03,084 | INFO     | did not find any defunct processes belonging to 23367
[2025-06-04 09:05:40] 2025-06-04 06:42:03,085 | INFO     | ready for new job
[2025-06-04 09:05:40] 2025-06-04 06:42:03,086 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:05:40] 2025-06-04 06:42:03,087 | INFO     | **************************************
[2025-06-04 09:05:40] 2025-06-04 06:42:03,088 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:05:40] 2025-06-04 06:42:03,088 | INFO     | **************************************
[2025-06-04 09:05:40] 2025-06-04 06:42:03,088 | INFO     | 
[2025-06-04 09:05:40] 2025-06-04 06:42:03,088 | INFO     | pilot is running in a VM
[2025-06-04 09:05:40] 2025-06-04 06:42:03,088 | INFO     | architecture information:
[2025-06-04 09:05:40] 2025-06-04 06:42:03,090 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:05:40] 2025-06-04 06:42:03,281 | INFO     | cat /etc/os-release:
[2025-06-04 09:05:40] NAME="CentOS Linux"
[2025-06-04 09:05:40] VERSION="7 (Core)"
[2025-06-04 09:05:40] ID="centos"
[2025-06-04 09:05:40] ID_LIKE="rhel fedora"
[2025-06-04 09:05:40] VERSION_ID="7"
[2025-06-04 09:05:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:05:40] ANSI_COLOR="0;31"
[2025-06-04 09:05:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:05:40] HOME_URL="https://www.centos.org/"
[2025-06-04 09:05:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:05:40] 
[2025-06-04 09:05:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:05:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:05:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:05:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:05:40] 
[2025-06-04 09:05:40] 2025-06-04 06:42:03,281 | INFO     | **************************************
[2025-06-04 09:05:40] 2025-06-04 06:42:03,785 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 09:05:40] 2025-06-04 06:42:03,966 | INFO     | sufficient remaining disk space (497294508032 B)
[2025-06-04 09:05:40] 2025-06-04 06:42:03,966 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:05:40] 2025-06-04 06:42:03,967 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:05:40] 2025-06-04 06:42:03,967 | INFO     | update_server=False
[2025-06-04 09:05:40] 2025-06-04 06:42:03,967 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:05:40] 2025-06-04 06:42:03,968 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:05:40] 2025-06-04 06:42:03,968 | INFO     | aborting loop
[2025-06-04 09:05:40] 2025-06-04 06:42:03,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:05:40] 2025-06-04 06:42:03,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:05:40] 2025-06-04 06:42:03,974 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 09:05:40] 2025-06-04 06:42:03,974 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:05:40] 2025-06-04 06:42:03,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:05:40] 2025-06-04 06:42:03,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:05:40] 2025-06-04 06:42:04,049 | INFO     | all payload control threads have been joined
[2025-06-04 09:05:40] 2025-06-04 06:42:04,678 | INFO     | all data control threads have been joined
[2025-06-04 09:05:40] 2025-06-04 06:42:04,973 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:04,974 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:05,055 | INFO     | [payload] control thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:05,159 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:05,223 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:05,294 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:05,297 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:05,362 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:05,460 | INFO     | all job control threads have been joined
[2025-06-04 09:05:40] 2025-06-04 06:42:05,684 | INFO     | [data] control thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:05,721 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:05,761 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:05:40] 2025-06-04 06:42:05,852 | INFO     | [job] validate thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:05,978 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:06,180 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:06,466 | INFO     | [job] control thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:06,767 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:07,978 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:05:40] 2025-06-04 06:42:08,079 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139786578122560)>', '<ExcThread(monitor, started 139786010486528)>']
[2025-06-04 09:05:40] 2025-06-04 06:42:09,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:05:40] 2025-06-04 06:42:09,004 | INFO     | [monitor] control thread has ended
[2025-06-04 09:05:40] 2025-06-04 06:42:13,105 | INFO     | all workflow threads have been joined
[2025-06-04 09:05:40] 2025-06-04 06:42:13,105 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:05:40] 2025-06-04 06:42:13,106 | INFO     | traces error code: 0
[2025-06-04 09:05:40] 2025-06-04 06:42:13,106 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:05:40] 2025-06-04 06:42:13,415 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:05:40] 2025-06-04 06:42:13,453 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:05:40] 2025-06-04 06:42:13,520 [wrapper] pilotpid: 14752
[2025-06-04 09:05:40] 2025-06-04 06:42:13,563 [wrapper] Pilot exit status: 0
[2025-06-04 09:05:40] 2025-06-04 06:42:13,859 [wrapper] pandaids: 6677733623
[2025-06-04 09:05:40] 2025-06-04 06:42:14,407 [wrapper] cleanup supervisor_pilot  7430 14753
[2025-06-04 09:05:40] 2025-06-04 06:42:14,494 [wrapper] Test setup, not cleaning
[2025-06-04 09:05:40] 2025-06-04 06:42:14,553 [wrapper] apfmon messages muted
[2025-06-04 09:05:40] 2025-06-04 06:42:14,592 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:05:40] 2025-06-04 06:42:14,673 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:05:40]  *** Error codes and diagnostics ***
[2025-06-04 09:05:40]     "exeErrorCode": 0,
[2025-06-04 09:05:40]     "exeErrorDiag": "",
[2025-06-04 09:05:40]     "pilotErrorCode": 0,
[2025-06-04 09:05:40]     "pilotErrorDiag": "",
[2025-06-04 09:05:40]  *** Listing of results directory ***
[2025-06-04 09:05:40] total 395636
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc    495897 Jun  3 17:35 pilot3.tar.gz
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc      5111 Jun  3 17:49 queuedata.json
[2025-06-04 09:05:40] -rwx------. 1 boinc boinc     37140 Jun  3 17:49 runpilot2-wrapper.sh
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc       100 Jun  4 04:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:05:40] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 04:59 run_atlas
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc       105 Jun  4 04:59 job.xml
[2025-06-04 09:05:40] -rw-r--r--. 2 boinc boinc 215267286 Jun  4 04:59 EVNT.45006593._001510.pool.root.1
[2025-06-04 09:05:40] -rw-r--r--. 2 boinc boinc     15093 Jun  4 04:59 start_atlas.sh
[2025-06-04 09:05:40] drwxrwx--x. 2 boinc boinc        68 Jun  4 04:59 shared
[2025-06-04 09:05:40] -rw-r--r--. 2 boinc boinc    508882 Jun  4 04:59 input.tar.gz
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc      6392 Jun  4 04:59 init_data.xml
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc         0 Jun  4 04:59 boinc_lockfile
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc      2524 Jun  4 04:59 pandaJob.out
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc    986077 Jun  4 05:02 agis_schedconf.cvmfs.json
[2025-06-04 09:05:40] drwx------. 4 boinc boinc      4096 Jun  4 05:02 pilot3
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc 183053603 Jun  4 08:39 HITS.45006595._037611.pool.root.1
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc       531 Jun  4 08:39 boinc_task_state.xml
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc      1019 Jun  4 08:40 memory_monitor_summary.json
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc   1603667 Jun  4 08:40 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc    363204 Jun  4 08:40 log.45006595._037611.job.log.tgz.1
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc        95 Jun  4 08:41 pilot_heartbeat.json
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc      7692 Jun  4 08:42 heartbeat.json
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc      4540 Jun  4 08:42 pilotlog.txt
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc   1130459 Jun  4 08:42 log.45006595._037611.job.log.1
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc       357 Jun  4 08:42 output.list
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc       620 Jun  4 08:42 runtime_log
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc   1515520 Jun  4 08:42 result.tar.gz
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc      8673 Jun  4 08:42 runtime_log.err
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc       657 Jun  4 08:42 qVuLDmX4ig7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnukKDmgmHxom.diag
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc      8192 Jun  4 09:05 boinc_mmap_file
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc        28 Jun  4 09:05 wrapper_checkpoint.txt
[2025-06-04 09:05:40] -rw-r--r--. 1 boinc boinc     20516 Jun  4 09:05 stderr.txt
[2025-06-04 09:05:40] HITS file was successfully produced:
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc 183053603 Jun  4 08:39 shared/HITS.pool.root.1
[2025-06-04 09:05:40]  *** Contents of shared directory: ***
[2025-06-04 09:05:40] total 390984
[2025-06-04 09:05:40] -rw-r--r--. 2 boinc boinc 215267286 Jun  4 04:59 ATLAS.root_0
[2025-06-04 09:05:40] -rw-r--r--. 2 boinc boinc     15093 Jun  4 04:59 start_atlas.sh
[2025-06-04 09:05:40] -rw-r--r--. 2 boinc boinc    508882 Jun  4 04:59 input.tar.gz
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc 183053603 Jun  4 08:39 HITS.pool.root.1
[2025-06-04 09:05:40] -rw-------. 1 boinc boinc   1515520 Jun  4 08:42 result.tar.gz
09:05:42 (9820): run_atlas exited; CPU time 46563.245718
09:05:42 (9820): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN