Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:24:08 (2475271): wrapper (7.7.26015): starting
14:24:08 (2475271): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 14:24:08] Arguments: --nthreads 8
[2025-06-03 14:24:08] Threads: 8
[2025-06-03 14:24:08] Checking for CVMFS
[2025-06-03 14:24:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 14:24:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 14:24:08] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 14:24:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 14:24:08] 2.12.6.0 956287 147197 218260 146752 1 165 19035009 32935937 12892 130560 0 383298932 99.655 358444538 26171 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 14:24:08] CVMFS is ok
[2025-06-03 14:24:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 14:24:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 14:24:08] Further information can be found at the LHC@home message board.
[2025-06-03 14:24:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 14:24:08] Checking for apptainer binary...
[2025-06-03 14:24:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 14:24:08] Running /usr/bin/apptainer --version
[2025-06-03 14:24:08] apptainer version 1.4.1-1.el9
[2025-06-03 14:24:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 14:24:08] c-6-4.aglt2.org
[2025-06-03 14:24:08] apptainer works
[2025-06-03 14:24:08] Set ATHENA_PROC_NUMBER=8
[2025-06-03 14:24:08] Set ATHENA_CORE_NUMBER=8
[2025-06-03 14:24:08] Starting ATLAS job with PandaID=6677735592
[2025-06-03 14:24:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 21:59:10]  *** The last 200 lines of the pilot log: ***
[2025-06-03 21:59:10] 2025-06-04 01:48:31,911 | INFO     | mean x: 1748988357.9610093
[2025-06-03 21:59:10] 2025-06-04 01:48:31,911 | INFO     | mean y: 2091595.0733944955
[2025-06-03 21:59:10] 2025-06-04 01:48:31,911 | INFO     | -- intersect: -5974078698.716188
[2025-06-03 21:59:10] 2025-06-04 01:48:31,911 | INFO     | intersect: -5974078698.716188
[2025-06-03 21:59:10] 2025-06-04 01:48:31,912 | INFO     | chi2: 4.949917739722734
[2025-06-03 21:59:10] 2025-06-04 01:48:31,913 | INFO     | sum of square deviations: 24825680025.118412
[2025-06-03 21:59:10] 2025-06-04 01:48:31,978 | INFO     | sum of deviations: 135864564752.97696
[2025-06-03 21:59:10] 2025-06-04 01:48:31,979 | INFO     | mean x: 1748988205.461717
[2025-06-03 21:59:10] 2025-06-04 01:48:31,979 | INFO     | mean y: 2099925.30162413
[2025-06-03 21:59:10] 2025-06-04 01:48:31,979 | INFO     | -- intersect: -9569662904.667944
[2025-06-03 21:59:10] 2025-06-04 01:48:31,979 | INFO     | intersect: -9569662904.667944
[2025-06-03 21:59:10] 2025-06-04 01:48:32,009 | INFO     | chi2: 3.6274092860225804
[2025-06-03 21:59:10] 2025-06-04 01:48:32,009 | INFO     | current chi2=3.6274092860225804 (change=26.717786501523417 %)
[2025-06-03 21:59:10] 2025-06-04 01:48:32,010 | INFO     | sum of square deviations: 23971548595.061237
[2025-06-03 21:59:10] 2025-06-04 01:48:32,053 | INFO     | sum of deviations: 133904026572.55873
[2025-06-03 21:59:10] 2025-06-04 01:48:32,053 | INFO     | mean x: 1748988052.9530516
[2025-06-03 21:59:10] 2025-06-04 01:48:32,053 | INFO     | mean y: 2099572.8779342724
[2025-06-03 21:59:10] 2025-06-04 01:48:32,054 | INFO     | -- intersect: -9767671528.43355
[2025-06-03 21:59:10] 2025-06-04 01:48:32,054 | INFO     | intersect: -9767671528.43355
[2025-06-03 21:59:10] 2025-06-04 01:48:32,085 | INFO     | chi2: 3.6261287797672854
[2025-06-03 21:59:10] 2025-06-04 01:48:32,085 | INFO     | current chi2=3.6261287797672854 (change=0.03530084846584901 %)
[2025-06-03 21:59:10] 2025-06-04 01:48:32,085 | INFO     | right removable region: 425
[2025-06-03 21:59:10] 2025-06-04 01:48:32,090 | INFO     | sum of square deviations: 24825610241.262203
[2025-06-03 21:59:10] 2025-06-04 01:48:32,124 | INFO     | sum of deviations: 1717583487.7702827
[2025-06-03 21:59:10] 2025-06-04 01:48:32,124 | INFO     | mean x: 1748988510.4663572
[2025-06-03 21:59:10] 2025-06-04 01:48:32,124 | INFO     | mean y: 2106593.777262181
[2025-06-03 21:59:10] 2025-06-04 01:48:32,124 | INFO     | -- intersect: -118898842.0079177
[2025-06-03 21:59:10] 2025-06-04 01:48:32,125 | INFO     | intersect: -118898842.0079177
[2025-06-03 21:59:10] 2025-06-04 01:48:32,150 | INFO     | chi2: 2.7762784862798355
[2025-06-03 21:59:10] 2025-06-04 01:48:32,151 | INFO     | current chi2=2.7762784862798355 (change=43.91263386055085 %)
[2025-06-03 21:59:10] 2025-06-04 01:48:32,151 | INFO     | sum of square deviations: 23971514317.66205
[2025-06-03 21:59:10] 2025-06-04 01:48:32,188 | INFO     | sum of deviations: -54194386403.774635
[2025-06-03 21:59:10] 2025-06-04 01:48:32,189 | INFO     | mean x: 1748988662.971831
[2025-06-03 21:59:10] 2025-06-04 01:48:32,189 | INFO     | mean y: 2116566.0187793425
[2025-06-03 21:59:10] 2025-06-04 01:48:32,189 | INFO     | -- intersect: 3956199990.238641
[2025-06-03 21:59:10] 2025-06-04 01:48:32,189 | INFO     | intersect: 3956199990.238641
[2025-06-03 21:59:10] 2025-06-04 01:48:32,190 | INFO     | chi2: 1.9004750378915498
[2025-06-03 21:59:10] 2025-06-04 01:48:32,190 | INFO     | current chi2=1.9004750378915498 (change=31.54595090933572 %)
[2025-06-03 21:59:10] 2025-06-04 01:48:32,236 | INFO     | sum of square deviations: 23137232719.035637
[2025-06-03 21:59:10] 2025-06-04 01:48:32,300 | INFO     | sum of deviations: -54894296875.68411
[2025-06-03 21:59:10] 2025-06-04 01:48:32,300 | INFO     | mean x: 1748988815.4774346
[2025-06-03 21:59:10] 2025-06-04 01:48:32,300 | INFO     | mean y: 2116685.033254157
[2025-06-03 21:59:10] 2025-06-04 01:48:32,300 | INFO     | -- intersect: 4151684286.0921197
[2025-06-03 21:59:10] 2025-06-04 01:48:32,300 | INFO     | intersect: 4151684286.0921197
[2025-06-03 21:59:10] 2025-06-04 01:48:32,301 | INFO     | chi2: 1.8828160235291602
[2025-06-03 21:59:10] 2025-06-04 01:48:32,301 | INFO     | current chi2=1.8828160235291602 (change=0.9291894926429073 %)
[2025-06-03 21:59:10] 2025-06-04 01:48:32,301 | INFO     | left removable region: 30
[2025-06-03 21:59:10] 2025-06-04 01:48:32,302 | INFO     | sum of square deviations: 19109524464.607582
[2025-06-03 21:59:10] 2025-06-04 01:48:32,345 | INFO     | sum of deviations: 25810497252.367085
[2025-06-03 21:59:10] 2025-06-04 01:48:32,346 | INFO     | mean x: 1748988937.4810126
[2025-06-03 21:59:10] 2025-06-04 01:48:32,346 | INFO     | mean y: 2118904.782278481
[2025-06-03 21:59:10] 2025-06-04 01:48:32,346 | INFO     | -- intersect: -2360172959.093315
[2025-06-03 21:59:10] 2025-06-04 01:48:32,346 | INFO     | intersect: -2360172959.093315
[2025-06-03 21:59:10] 2025-06-04 01:48:32,347 | INFO     | chi2: 0.4125237494096124
[2025-06-03 21:59:10] 2025-06-04 01:48:32,347 | INFO     | -- intersect: -2360172959.093315
[2025-06-03 21:59:10] 2025-06-04 01:48:32,347 | INFO     | current memory leak: 1.35 B/s (using 395 data points, chi2=0.41)
[2025-06-03 21:59:10] 2025-06-04 01:48:32,381 | INFO     | ..............................
[2025-06-03 21:59:10] 2025-06-04 01:48:32,381 | INFO     | . Timing measurements:
[2025-06-03 21:59:10] 2025-06-04 01:48:32,381 | INFO     | . get job = 0 s
[2025-06-03 21:59:10] 2025-06-04 01:48:32,381 | INFO     | . initial setup = 3 s
[2025-06-03 21:59:10] 2025-06-04 01:48:32,381 | INFO     | . payload setup = 8 s
[2025-06-03 21:59:10] 2025-06-04 01:48:32,382 | INFO     | . stage-in = 0 s
[2025-06-03 21:59:10] 2025-06-04 01:48:32,382 | INFO     | . payload execution = 26568 s
[2025-06-03 21:59:10] 2025-06-04 01:48:32,382 | INFO     | . stage-out = 8 s
[2025-06-03 21:59:10] 2025-06-04 01:48:32,382 | INFO     | . log creation = 0 s
[2025-06-03 21:59:10] 2025-06-04 01:48:32,382 | INFO     | ..............................
[2025-06-03 21:59:10] 2025-06-04 01:48:33,523 | INFO     | 
[2025-06-03 21:59:10] 2025-06-04 01:48:33,523 | INFO     | job summary report
[2025-06-03 21:59:10] 2025-06-04 01:48:33,523 | INFO     | --------------------------------------------------
[2025-06-03 21:59:10] 2025-06-04 01:48:33,523 | INFO     | PanDA job id: 6677735592
[2025-06-03 21:59:10] 2025-06-04 01:48:33,523 | INFO     | task id: 45006595
[2025-06-03 21:59:10] 2025-06-04 01:48:33,523 | INFO     | errors: (none)
[2025-06-03 21:59:10] 2025-06-04 01:48:33,523 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 21:59:10] 2025-06-04 01:48:33,523 | INFO     | pilot state: finished 
[2025-06-03 21:59:10] 2025-06-04 01:48:33,524 | INFO     | transexitcode: 0
[2025-06-03 21:59:10] 2025-06-04 01:48:33,524 | INFO     | exeerrorcode: 0
[2025-06-03 21:59:10] 2025-06-04 01:48:33,524 | INFO     | exeerrordiag: 
[2025-06-03 21:59:10] 2025-06-04 01:48:33,524 | INFO     | exitcode: 0
[2025-06-03 21:59:10] 2025-06-04 01:48:33,524 | INFO     | exitmsg: OK
[2025-06-03 21:59:10] 2025-06-04 01:48:33,524 | INFO     | cpuconsumptiontime: 43179 s
[2025-06-03 21:59:10] 2025-06-04 01:48:33,524 | INFO     | nevents: 400
[2025-06-03 21:59:10] 2025-06-04 01:48:33,524 | INFO     | neventsw: 0
[2025-06-03 21:59:10] 2025-06-04 01:48:33,524 | INFO     | pid: 2485715
[2025-06-03 21:59:10] 2025-06-04 01:48:33,524 | INFO     | pgrp: 2485715
[2025-06-03 21:59:10] 2025-06-04 01:48:33,525 | INFO     | corecount: 8
[2025-06-03 21:59:10] 2025-06-04 01:48:33,525 | INFO     | event service: False
[2025-06-03 21:59:10] 2025-06-04 01:48:33,525 | INFO     | sizes: {0: 2405013, 1: 2405212, 6: 2405418, 12: 2405446, 26582: 2441083, 26583: 2441082, 26592: 2450207, 26595: 2450263, 26636: 2450433}
[2025-06-03 21:59:10] 2025-06-04 01:48:33,525 | INFO     | --------------------------------------------------
[2025-06-03 21:59:10] 2025-06-04 01:48:33,525 | INFO     | 
[2025-06-03 21:59:10] 2025-06-04 01:48:33,525 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-03 21:59:10] 2025-06-04 01:48:33,805 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,805 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,805 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,806 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,806 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,806 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,806 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,806 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,806 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,806 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,806 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,806 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,806 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,807 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,807 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,807 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,807 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,807 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 21:59:10] 2025-06-04 01:48:33,807 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,807 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 21:59:10] 2025-06-04 01:48:33,807 | INFO     | job 6677735592 has completed (purged errors)
[2025-06-03 21:59:10] 2025-06-04 01:48:33,808 | INFO     | overall cleanup function is called
[2025-06-03 21:59:10] 2025-06-04 01:48:34,874 | INFO     | --- collectZombieJob: --- 10, [2485715]
[2025-06-03 21:59:10] 2025-06-04 01:48:34,875 | INFO     | zombie collector waiting for pid 2485715
[2025-06-03 21:59:10] 2025-06-04 01:48:34,875 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 21:59:10] 2025-06-04 01:48:34,875 | INFO     | collected zombie processes
[2025-06-03 21:59:10] 2025-06-04 01:48:34,875 | INFO     | will attempt to kill all subprocesses of pid=2485715
[2025-06-03 21:59:10] 2025-06-04 01:48:39,241 | INFO     | process IDs to be killed: [2485715] (in reverse order)
[2025-06-03 21:59:10] 2025-06-04 01:48:40,612 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 21:59:10] 2025-06-04 01:48:40,613 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 21:59:10] 2025-06-04 01:48:40,763 | INFO     | did not find any defunct processes belonging to 2485715
[2025-06-03 21:59:10] 2025-06-04 01:48:40,966 | INFO     | did not find any defunct processes belonging to 2485715
[2025-06-03 21:59:10] 2025-06-04 01:48:40,969 | INFO     | ready for new job
[2025-06-03 21:59:10] 2025-06-04 01:48:40,970 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 21:59:10] 2025-06-04 01:48:40,972 | INFO     | **************************************
[2025-06-03 21:59:10] 2025-06-04 01:48:40,973 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 21:59:10] 2025-06-04 01:48:40,973 | INFO     | **************************************
[2025-06-03 21:59:10] 2025-06-04 01:48:40,973 | INFO     | 
[2025-06-03 21:59:10] 2025-06-04 01:48:41,033 | INFO     | architecture information:
[2025-06-03 21:59:10] 2025-06-04 01:48:41,074 | INFO     | executing command: cat /etc/os-release
[2025-06-03 21:59:10] 2025-06-04 01:48:41,181 | INFO     | cat /etc/os-release:
[2025-06-03 21:59:10] NAME="CentOS Linux"
[2025-06-03 21:59:10] VERSION="7 (Core)"
[2025-06-03 21:59:10] ID="centos"
[2025-06-03 21:59:10] ID_LIKE="rhel fedora"
[2025-06-03 21:59:10] VERSION_ID="7"
[2025-06-03 21:59:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 21:59:10] ANSI_COLOR="0;31"
[2025-06-03 21:59:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 21:59:10] HOME_URL="https://www.centos.org/"
[2025-06-03 21:59:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 21:59:10] 
[2025-06-03 21:59:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 21:59:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 21:59:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 21:59:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 21:59:10] 
[2025-06-03 21:59:10] 2025-06-04 01:48:41,181 | INFO     | **************************************
[2025-06-03 21:59:10] 2025-06-04 01:48:41,738 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-03 21:59:10] 2025-06-04 01:48:41,796 | INFO     | sufficient remaining disk space (74018979840 B)
[2025-06-03 21:59:10] 2025-06-04 01:48:41,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 21:59:10] 2025-06-04 01:48:41,797 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 21:59:10] 2025-06-04 01:48:41,797 | INFO     | update_server=False
[2025-06-03 21:59:10] 2025-06-04 01:48:41,797 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 21:59:10] 2025-06-04 01:48:41,890 | INFO     | all payload control threads have been joined
[2025-06-03 21:59:10] 2025-06-04 01:48:42,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:59:10] 2025-06-04 01:48:42,064 | INFO     | aborting loop
[2025-06-03 21:59:10] 2025-06-04 01:48:42,709 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 21:59:10] 2025-06-04 01:48:42,742 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:59:10] 2025-06-04 01:48:42,781 | INFO     | all data control threads have been joined
[2025-06-03 21:59:10] 2025-06-04 01:48:42,811 | INFO     | [job] retrieve thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:42,894 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:42,896 | INFO     | [payload] control thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:43,082 | INFO     | [job] job monitor thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:43,240 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 21:59:10] 2025-06-04 01:48:43,318 | INFO     | [job] validate thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:43,564 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:43,621 | INFO     | [payload] failed_post thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:43,627 | INFO     | [payload] validate_post thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:43,752 | INFO     | [job] queue monitor thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:43,787 | INFO     | [data] control thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:43,897 | INFO     | all job control threads have been joined
[2025-06-03 21:59:10] 2025-06-04 01:48:44,124 | INFO     | [data] copytool_in thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:44,221 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:44,284 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:44,772 | INFO     | [data] copytool_out thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:44,903 | INFO     | [job] control thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:46,201 | INFO     | PID=2478829 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 21:59:10] 2025-06-04 01:48:46,235 | INFO     | .. there are 33 such processes running
[2025-06-03 21:59:10] 2025-06-04 01:48:46,235 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 21:59:10] 2025-06-04 01:48:46,235 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 21:59:10] 2025-06-04 01:48:46,235 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 21:59:10] 2025-06-04 01:48:47,258 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 21:59:10] 2025-06-04 01:48:48,088 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140315719313216)>', '<ExcThread(monitor, started 140315222595328)>']
[2025-06-03 21:59:10] 2025-06-04 01:48:48,247 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 21:59:10] 2025-06-04 01:48:48,248 | INFO     | [monitor] control thread has ended
[2025-06-03 21:59:10] 2025-06-04 01:48:53,153 | INFO     | all workflow threads have been joined
[2025-06-03 21:59:10] 2025-06-04 01:48:53,154 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 21:59:10] 2025-06-04 01:48:53,154 | INFO     | traces error code: 0
[2025-06-03 21:59:10] 2025-06-04 01:48:53,154 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 21:59:10] 2025-06-04 01:48:54,861 [wrapper] ==== pilot stdout END ====
[2025-06-03 21:59:10] 2025-06-04 01:48:54,893 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 21:59:10] 2025-06-04 01:48:54,937 [wrapper] pilotpid: 2478829
[2025-06-03 21:59:10] 2025-06-04 01:48:54,981 [wrapper] Pilot exit status: 0
[2025-06-03 21:59:10] 2025-06-04 01:48:55,123 [wrapper] pandaids: 6677735592
[2025-06-03 21:59:10] 2025-06-04 01:48:56,005 [wrapper] cleanup supervisor_pilot 2245116 2478830
[2025-06-03 21:59:10] 2025-06-04 01:48:56,024 [wrapper] Test setup, not cleaning
[2025-06-03 21:59:10] 2025-06-04 01:48:56,045 [wrapper] apfmon messages muted
[2025-06-03 21:59:10] 2025-06-04 01:48:56,060 [wrapper] ==== wrapper stdout END ====
[2025-06-03 21:59:10] 2025-06-04 01:48:56,071 [wrapper] ==== wrapper stderr END ====
[2025-06-03 21:59:10]  *** Error codes and diagnostics ***
[2025-06-03 21:59:10]     "exeErrorCode": 0,
[2025-06-03 21:59:10]     "exeErrorDiag": "",
[2025-06-03 21:59:10]     "pilotErrorCode": 0,
[2025-06-03 21:59:10]     "pilotErrorDiag": "",
[2025-06-03 21:59:10]  *** Listing of results directory ***
[2025-06-03 21:59:10] total 388060
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 12:03 pilot3.tar.gz
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 12:10 queuedata.json
[2025-06-03 21:59:10] -rwx------. 1 boincer umatlas     37140 Jun  3 12:11 runpilot2-wrapper.sh
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas       100 Jun  3 14:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 21:59:10] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 14:24 run_atlas
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas       105 Jun  3 14:24 job.xml
[2025-06-03 21:59:10] -rw-r--r--. 2 boincer umatlas 215416434 Jun  3 14:24 EVNT.45006593._001533.pool.root.1
[2025-06-03 21:59:10] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 14:24 start_atlas.sh
[2025-06-03 21:59:10] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 14:24 shared
[2025-06-03 21:59:10] -rw-r--r--. 2 boincer umatlas    508885 Jun  3 14:24 input.tar.gz
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas         0 Jun  3 14:24 boinc_lockfile
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 14:24 pandaJob.out
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas    986893 Jun  3 14:24 agis_schedconf.cvmfs.json
[2025-06-03 21:59:10] drwx------. 4 boincer umatlas      4096 Jun  3 14:24 pilot3
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas 173149003 Jun  3 21:45 HITS.45006595._038189.pool.root.1
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas       529 Jun  3 21:45 boinc_task_state.xml
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas      1063 Jun  3 21:47 memory_monitor_summary.json
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas   1603667 Jun  3 21:47 agis_ddmendpoints.agis.ALL.json
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas    483201 Jun  3 21:47 log.45006595._038189.job.log.tgz.1
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas      7733 Jun  3 21:48 heartbeat.json
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas        95 Jun  3 21:48 pilot_heartbeat.json
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas      4748 Jun  3 21:48 pilotlog.txt
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas   2003484 Jun  3 21:48 log.45006595._038189.job.log.1
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas       357 Jun  3 21:48 output.list
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas       620 Jun  3 21:48 runtime_log
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas   2508800 Jun  3 21:48 result.tar.gz
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas      8645 Jun  3 21:48 runtime_log.err
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas       660 Jun  3 21:48 1GRMDm4Pjg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3ykKDmz7SHCo.diag
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas      6670 Jun  3 21:57 init_data.xml
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas        26 Jun  3 21:59 wrapper_checkpoint.txt
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 21:59 boinc_mmap_file
[2025-06-03 21:59:10] -rw-r--r--. 1 boincer umatlas     20944 Jun  3 21:59 stderr.txt
[2025-06-03 21:59:10] HITS file was successfully produced:
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas 173149003 Jun  3 21:45 shared/HITS.pool.root.1
[2025-06-03 21:59:10]  *** Contents of shared directory: ***
[2025-06-03 21:59:10] total 382432
[2025-06-03 21:59:10] -rw-r--r--. 2 boincer umatlas 215416434 Jun  3 14:24 ATLAS.root_0
[2025-06-03 21:59:10] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 14:24 start_atlas.sh
[2025-06-03 21:59:10] -rw-r--r--. 2 boincer umatlas    508885 Jun  3 14:24 input.tar.gz
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas 173149003 Jun  3 21:45 HITS.pool.root.1
[2025-06-03 21:59:10] -rw-------. 1 boincer umatlas   2508800 Jun  3 21:48 result.tar.gz
21:59:12 (2475271): run_atlas exited; CPU time 44263.596869
21:59:12 (2475271): called boinc_finish(0)

</stderr_txt>
]]>

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