Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:24:20 (20047): wrapper (7.7.26015): starting
04:24:20 (20047): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 04:24:20] Arguments: --nthreads 8
[2025-06-04 04:24:20] Threads: 8
[2025-06-04 04:24:20] Checking for CVMFS
[2025-06-04 04:24:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:24:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:24:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:24:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:24:20] 2.11.2.0 26867 32604 93976 146763 3 209 16539029 25165825 3708 130560 0 16945930 99.820 18704639 1978 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 04:24:20] CVMFS is ok
[2025-06-04 04:24:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:24:20] Checking for apptainer binary...
[2025-06-04 04:24:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:24:20] Running /usr/bin/apptainer --version
[2025-06-04 04:24:21] apptainer version 1.3.2-1.el7
[2025-06-04 04:24:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:24:22] cg-vwn435.simple-grid.lan
[2025-06-04 04:24:22] apptainer works
[2025-06-04 04:24:22] Set ATHENA_PROC_NUMBER=8
[2025-06-04 04:24:22] Set ATHENA_CORE_NUMBER=8
[2025-06-04 04:24:22] Starting ATLAS job with PandaID=6677676676
[2025-06-04 04:24:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:32:02]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:32:02] 2025-06-04 06:07:42,257 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6677676676/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:32:02] 2025-06-04 06:07:42,258 | INFO     | extracted standard info from prmon json
[2025-06-04 08:32:02] 2025-06-04 06:07:42,258 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:32:02] 2025-06-04 06:07:42,258 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:32:02] 2025-06-04 06:07:42,258 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:32:02] 2025-06-04 06:07:42,258 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:32:02] 2025-06-04 06:07:42,263 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:32:02] 2025-06-04 06:07:42,264 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,266 | INFO     | sum of deviations: -602001192.0000019
[2025-06-04 08:32:02] 2025-06-04 06:07:42,266 | INFO     | mean x: 1749010567.0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,266 | INFO     | mean y: 2468666.529953917
[2025-06-04 08:32:02] 2025-06-04 06:07:42,266 | INFO     | -- intersect: 334777114.4155158
[2025-06-04 08:32:02] 2025-06-04 06:07:42,266 | INFO     | intersect: 334777114.4155158
[2025-06-04 08:32:02] 2025-06-04 06:07:42,267 | INFO     | chi2: 3.571318613389061
[2025-06-04 08:32:02] 2025-06-04 06:07:42,267 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,269 | INFO     | sum of deviations: 28496822311.500004
[2025-06-04 08:32:02] 2025-06-04 06:07:42,269 | INFO     | mean x: 1749010414.5
[2025-06-04 08:32:02] 2025-06-04 06:07:42,271 | INFO     | mean y: 2489110.7688679243
[2025-06-04 08:32:02] 2025-06-04 06:07:42,272 | INFO     | -- intersect: -16867410036.501528
[2025-06-04 08:32:02] 2025-06-04 06:07:42,272 | INFO     | intersect: -16867410036.501528
[2025-06-04 08:32:02] 2025-06-04 06:07:42,272 | INFO     | chi2: 1.9367712666579935
[2025-06-04 08:32:02] 2025-06-04 06:07:42,272 | INFO     | current chi2=1.9367712666579935 (change=45.76873484776922 %)
[2025-06-04 08:32:02] 2025-06-04 06:07:42,273 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,274 | INFO     | sum of deviations: 27763090979.00001
[2025-06-04 08:32:02] 2025-06-04 06:07:42,275 | INFO     | mean x: 1749010262.0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,275 | INFO     | mean y: 2488562.579710145
[2025-06-04 08:32:02] 2025-06-04 06:07:42,275 | INFO     | -- intersect: -17653045095.561306
[2025-06-04 08:32:02] 2025-06-04 06:07:42,275 | INFO     | intersect: -17653045095.561306
[2025-06-04 08:32:02] 2025-06-04 06:07:42,275 | INFO     | chi2: 1.938275083622836
[2025-06-04 08:32:02] 2025-06-04 06:07:42,276 | INFO     | current chi2=1.938275083622836 (change=-0.07764556355884991 %)
[2025-06-04 08:32:02] 2025-06-04 06:07:42,276 | INFO     | right removable region: 206
[2025-06-04 08:32:02] 2025-06-04 06:07:42,276 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,278 | INFO     | sum of deviations: -40800386556.0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,278 | INFO     | mean x: 1749010719.5
[2025-06-04 08:32:02] 2025-06-04 06:07:42,278 | INFO     | mean y: 2497078.3584905663
[2025-06-04 08:32:02] 2025-06-04 06:07:42,279 | INFO     | -- intersect: 24156015631.199177
[2025-06-04 08:32:02] 2025-06-04 06:07:42,279 | INFO     | intersect: 24156015631.199177
[2025-06-04 08:32:02] 2025-06-04 06:07:42,279 | INFO     | chi2: 1.8225622794907967
[2025-06-04 08:32:02] 2025-06-04 06:07:42,279 | INFO     | current chi2=1.8225622794907967 (change=48.96668494774129 %)
[2025-06-04 08:32:02] 2025-06-04 06:07:42,280 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,281 | INFO     | sum of deviations: -43118085704.00001
[2025-06-04 08:32:02] 2025-06-04 06:07:42,282 | INFO     | mean x: 1749010872.0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,282 | INFO     | mean y: 2498808.4009661837
[2025-06-04 08:32:02] 2025-06-04 06:07:42,282 | INFO     | -- intersect: 27422827456.443863
[2025-06-04 08:32:02] 2025-06-04 06:07:42,282 | INFO     | intersect: 27422827456.443863
[2025-06-04 08:32:02] 2025-06-04 06:07:42,282 | INFO     | chi2: 1.8111100020333437
[2025-06-04 08:32:02] 2025-06-04 06:07:42,283 | INFO     | current chi2=1.8111100020333437 (change=0.6283613781720901 %)
[2025-06-04 08:32:02] 2025-06-04 06:07:42,283 | INFO     | left removable region: 20
[2025-06-04 08:32:02] 2025-06-04 06:07:42,283 | INFO     | sum of square deviations: 1995283922.5
[2025-06-04 08:32:02] 2025-06-04 06:07:42,285 | INFO     | sum of deviations: -1497693441.499999
[2025-06-04 08:32:02] 2025-06-04 06:07:42,285 | INFO     | mean x: 1749010841.5
[2025-06-04 08:32:02] 2025-06-04 06:07:42,285 | INFO     | mean y: 2509980.4784946237
[2025-06-04 08:32:02] 2025-06-04 06:07:42,285 | INFO     | -- intersect: 1315346733.6283183
[2025-06-04 08:32:02] 2025-06-04 06:07:42,288 | INFO     | intersect: 1315346733.6283183
[2025-06-04 08:32:02] 2025-06-04 06:07:42,289 | INFO     | chi2: 0.06485474362913692
[2025-06-04 08:32:02] 2025-06-04 06:07:42,289 | INFO     | -- intersect: 1315346733.6283183
[2025-06-04 08:32:02] 2025-06-04 06:07:42,289 | INFO     | current memory leak: -0.75 B/s (using 186 data points, chi2=0.06)
[2025-06-04 08:32:02] 2025-06-04 06:07:42,290 | INFO     | ..............................
[2025-06-04 08:32:02] 2025-06-04 06:07:42,290 | INFO     | . Timing measurements:
[2025-06-04 08:32:02] 2025-06-04 06:07:42,290 | INFO     | . get job = 0 s
[2025-06-04 08:32:02] 2025-06-04 06:07:42,290 | INFO     | . initial setup = 4 s
[2025-06-04 08:32:02] 2025-06-04 06:07:42,291 | INFO     | . payload setup = 21 s
[2025-06-04 08:32:02] 2025-06-04 06:07:42,291 | INFO     | . stage-in = 0 s
[2025-06-04 08:32:02] 2025-06-04 06:07:42,291 | INFO     | . payload execution = 13209 s
[2025-06-04 08:32:02] 2025-06-04 06:07:42,291 | INFO     | . stage-out = 6 s
[2025-06-04 08:32:02] 2025-06-04 06:07:42,291 | INFO     | . log creation = 1 s
[2025-06-04 08:32:02] 2025-06-04 06:07:42,291 | INFO     | ..............................
[2025-06-04 08:32:02] 2025-06-04 06:07:42,440 | INFO     | 
[2025-06-04 08:32:02] 2025-06-04 06:07:42,440 | INFO     | job summary report
[2025-06-04 08:32:02] 2025-06-04 06:07:42,440 | INFO     | --------------------------------------------------
[2025-06-04 08:32:02] 2025-06-04 06:07:42,440 | INFO     | PanDA job id: 6677676676
[2025-06-04 08:32:02] 2025-06-04 06:07:42,440 | INFO     | task id: 45006595
[2025-06-04 08:32:02] 2025-06-04 06:07:42,440 | INFO     | errors: (none)
[2025-06-04 08:32:02] 2025-06-04 06:07:42,441 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:32:02] 2025-06-04 06:07:42,441 | INFO     | pilot state: finished 
[2025-06-04 08:32:02] 2025-06-04 06:07:42,441 | INFO     | transexitcode: 0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,441 | INFO     | exeerrorcode: 0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,441 | INFO     | exeerrordiag: 
[2025-06-04 08:32:02] 2025-06-04 06:07:42,441 | INFO     | exitcode: 0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,441 | INFO     | exitmsg: OK
[2025-06-04 08:32:02] 2025-06-04 06:07:42,441 | INFO     | cpuconsumptiontime: 50124 s
[2025-06-04 08:32:02] 2025-06-04 06:07:42,441 | INFO     | nevents: 400
[2025-06-04 08:32:02] 2025-06-04 06:07:42,442 | INFO     | neventsw: 0
[2025-06-04 08:32:02] 2025-06-04 06:07:42,442 | INFO     | pid: 5763
[2025-06-04 08:32:02] 2025-06-04 06:07:42,442 | INFO     | pgrp: 5763
[2025-06-04 08:32:02] 2025-06-04 06:07:42,442 | INFO     | corecount: 8
[2025-06-04 08:32:02] 2025-06-04 06:07:42,442 | INFO     | event service: False
[2025-06-04 08:32:02] 2025-06-04 06:07:42,442 | INFO     | sizes: {0: 2405013, 1: 2405212, 12: 2405212, 14: 2405446, 22: 2405474, 13234: 2435080, 13242: 2444021, 13245: 2444077, 13334: 2444247}
[2025-06-04 08:32:02] 2025-06-04 06:07:42,442 | INFO     | --------------------------------------------------
[2025-06-04 08:32:02] 2025-06-04 06:07:42,442 | INFO     | 
[2025-06-04 08:32:02] 2025-06-04 06:07:42,442 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-04 08:32:02] 2025-06-04 06:07:42,930 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,930 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,930 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,931 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,931 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,931 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,931 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,931 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,931 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,931 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,931 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,931 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,932 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,932 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,932 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,932 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,932 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:32:02] 2025-06-04 06:07:42,932 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,932 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:32:02] 2025-06-04 06:07:42,933 | INFO     | job 6677676676 has completed (purged errors)
[2025-06-04 08:32:02] 2025-06-04 06:07:42,933 | INFO     | overall cleanup function is called
[2025-06-04 08:32:02] 2025-06-04 06:07:43,941 | INFO     | --- collectZombieJob: --- 10, [5763]
[2025-06-04 08:32:02] 2025-06-04 06:07:43,942 | INFO     | zombie collector waiting for pid 5763
[2025-06-04 08:32:02] 2025-06-04 06:07:43,942 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:32:02] 2025-06-04 06:07:43,942 | INFO     | collected zombie processes
[2025-06-04 08:32:02] 2025-06-04 06:07:43,942 | INFO     | will attempt to kill all subprocesses of pid=5763
[2025-06-04 08:32:02] 2025-06-04 06:07:44,078 | INFO     | process IDs to be killed: [5763] (in reverse order)
[2025-06-04 08:32:02] 2025-06-04 06:07:44,887 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:32:02] 2025-06-04 06:07:44,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:32:02] 2025-06-04 06:07:44,891 | INFO     | did not find any defunct processes belonging to 5763
[2025-06-04 08:32:02] 2025-06-04 06:07:44,899 | INFO     | did not find any defunct processes belonging to 5763
[2025-06-04 08:32:02] 2025-06-04 06:07:44,899 | INFO     | ready for new job
[2025-06-04 08:32:02] 2025-06-04 06:07:44,899 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:32:02] 2025-06-04 06:07:44,901 | INFO     | **************************************
[2025-06-04 08:32:02] 2025-06-04 06:07:44,902 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:32:02] 2025-06-04 06:07:44,902 | INFO     | **************************************
[2025-06-04 08:32:02] 2025-06-04 06:07:44,902 | INFO     | 
[2025-06-04 08:32:02] 2025-06-04 06:07:44,902 | INFO     | pilot is running in a VM
[2025-06-04 08:32:02] 2025-06-04 06:07:44,903 | INFO     | architecture information:
[2025-06-04 08:32:02] 2025-06-04 06:07:44,922 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:32:02] 2025-06-04 06:07:45,108 | INFO     | cat /etc/os-release:
[2025-06-04 08:32:02] NAME="CentOS Linux"
[2025-06-04 08:32:02] VERSION="7 (Core)"
[2025-06-04 08:32:02] ID="centos"
[2025-06-04 08:32:02] ID_LIKE="rhel fedora"
[2025-06-04 08:32:02] VERSION_ID="7"
[2025-06-04 08:32:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:32:02] ANSI_COLOR="0;31"
[2025-06-04 08:32:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:32:02] HOME_URL="https://www.centos.org/"
[2025-06-04 08:32:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:32:02] 
[2025-06-04 08:32:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:32:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:32:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:32:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:32:02] 
[2025-06-04 08:32:02] 2025-06-04 06:07:45,108 | INFO     | **************************************
[2025-06-04 08:32:02] 2025-06-04 06:07:45,612 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-04 08:32:02] 2025-06-04 06:07:45,868 | INFO     | sufficient remaining disk space (496855154688 B)
[2025-06-04 08:32:02] 2025-06-04 06:07:45,868 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:32:02] 2025-06-04 06:07:45,869 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:32:02] 2025-06-04 06:07:45,869 | INFO     | update_server=False
[2025-06-04 08:32:02] 2025-06-04 06:07:45,869 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:32:02] 2025-06-04 06:07:45,869 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:32:02] 2025-06-04 06:07:46,212 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:32:02] 2025-06-04 06:07:46,213 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:32:02] 2025-06-04 06:07:46,213 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:32:02] 2025-06-04 06:07:46,460 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:32:02] 2025-06-04 06:07:46,630 | INFO     | all job control threads have been joined
[2025-06-04 08:32:02] 2025-06-04 06:07:46,716 | INFO     | all data control threads have been joined
[2025-06-04 08:32:02] 2025-06-04 06:07:46,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:32:02] 2025-06-04 06:07:46,727 | INFO     | aborting loop
[2025-06-04 08:32:02] 2025-06-04 06:07:46,875 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:46,941 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:47,161 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:47,367 | INFO     | all payload control threads have been joined
[2025-06-04 08:32:02] 2025-06-04 06:07:47,455 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:32:02] 2025-06-04 06:07:47,474 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:47,636 | INFO     | [job] control thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:47,722 | INFO     | [data] control thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:47,733 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:47,892 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:48,047 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:48,179 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:48,236 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:48,313 | INFO     | [job] validate thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:48,373 | INFO     | [payload] control thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:48,461 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:48,467 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:49,878 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:32:02] 2025-06-04 06:07:51,596 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139684180948800)>', '<ExcThread(monitor, started 139683744970496)>']
[2025-06-04 08:32:02] 2025-06-04 06:07:52,247 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:32:02] 2025-06-04 06:07:52,248 | INFO     | [monitor] control thread has ended
[2025-06-04 08:32:02] 2025-06-04 06:07:56,623 | INFO     | all workflow threads have been joined
[2025-06-04 08:32:02] 2025-06-04 06:07:56,624 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:32:02] 2025-06-04 06:07:56,624 | INFO     | traces error code: 0
[2025-06-04 08:32:02] 2025-06-04 06:07:56,624 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:32:02] 2025-06-04 06:07:57,046 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:32:02] 2025-06-04 06:07:57,175 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:32:02] 2025-06-04 06:07:57,277 [wrapper] pilotpid: 23813
[2025-06-04 08:32:02] 2025-06-04 06:07:57,365 [wrapper] Pilot exit status: 0
[2025-06-04 08:32:02] 2025-06-04 06:07:57,811 [wrapper] pandaids: 6677676676
[2025-06-04 08:32:02] 2025-06-04 06:07:58,886 [wrapper] cleanup supervisor_pilot 19221 23814
[2025-06-04 08:32:02] 2025-06-04 06:07:58,923 [wrapper] Test setup, not cleaning
[2025-06-04 08:32:02] 2025-06-04 06:07:58,970 [wrapper] apfmon messages muted
[2025-06-04 08:32:02] 2025-06-04 06:07:59,013 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:32:02] 2025-06-04 06:07:59,082 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:32:02]  *** Error codes and diagnostics ***
[2025-06-04 08:32:02]     "exeErrorCode": 0,
[2025-06-04 08:32:02]     "exeErrorDiag": "",
[2025-06-04 08:32:02]     "pilotErrorCode": 0,
[2025-06-04 08:32:02]     "pilotErrorDiag": "",
[2025-06-04 08:32:02]  *** Listing of results directory ***
[2025-06-04 08:32:02] total 394360
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc    495897 Jun  3 16:52 pilot3.tar.gz
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc      5111 Jun  3 17:16 queuedata.json
[2025-06-04 08:32:02] -rwx------. 1 boinc boinc     37140 Jun  3 17:16 runpilot2-wrapper.sh
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc       100 Jun  4 04:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:32:02] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 04:24 run_atlas
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc       105 Jun  4 04:24 job.xml
[2025-06-04 08:32:02] -rw-r--r--. 2 boinc boinc 216329031 Jun  4 04:24 EVNT.45006593._001477.pool.root.1
[2025-06-04 08:32:02] -rw-r--r--. 2 boinc boinc     15093 Jun  4 04:24 start_atlas.sh
[2025-06-04 08:32:02] drwxrwx--x. 2 boinc boinc        68 Jun  4 04:24 shared
[2025-06-04 08:32:02] -rw-r--r--. 2 boinc boinc    508875 Jun  4 04:24 input.tar.gz
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc      6391 Jun  4 04:24 init_data.xml
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc         0 Jun  4 04:24 boinc_lockfile
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc      2525 Jun  4 04:24 pandaJob.out
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc    986077 Jun  4 04:24 agis_schedconf.cvmfs.json
[2025-06-04 08:32:02] drwx------. 4 boinc boinc      4096 Jun  4 04:24 pilot3
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc 180607912 Jun  4 08:04 HITS.45006595._036766.pool.root.1
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc       531 Jun  4 08:04 boinc_task_state.xml
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc      1030 Jun  4 08:05 memory_monitor_summary.json
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc   1603667 Jun  4 08:06 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc    379972 Jun  4 08:06 log.45006595._036766.job.log.tgz.1
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc        95 Jun  4 08:07 pilot_heartbeat.json
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc      7690 Jun  4 08:07 heartbeat.json
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc      4416 Jun  4 08:07 pilotlog.txt
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc   1153337 Jun  4 08:07 log.45006595._036766.job.log.1
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc       357 Jun  4 08:08 output.list
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc       620 Jun  4 08:08 runtime_log
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc   1556480 Jun  4 08:08 result.tar.gz
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc      8659 Jun  4 08:08 runtime_log.err
[2025-06-04 08:32:02] -rw-------. 1 boinc boinc       656 Jun  4 08:08 eqcLDmSYig7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmumkKDm5OjoCo.diag
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc      8192 Jun  4 08:32 boinc_mmap_file
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc        28 Jun  4 08:32 wrapper_checkpoint.txt
[2025-06-04 08:32:02] -rw-r--r--. 1 boinc boinc     20505 Jun  4 08:32 stderr.txt
[2025-06-04 08:32:03] HITS file was successfully produced:
[2025-06-04 08:32:03] -rw-------. 1 boinc boinc 180607912 Jun  4 08:04 shared/HITS.pool.root.1
[2025-06-04 08:32:03]  *** Contents of shared directory: ***
[2025-06-04 08:32:03] total 389672
[2025-06-04 08:32:03] -rw-r--r--. 2 boinc boinc 216329031 Jun  4 04:24 ATLAS.root_0
[2025-06-04 08:32:03] -rw-r--r--. 2 boinc boinc     15093 Jun  4 04:24 start_atlas.sh
[2025-06-04 08:32:03] -rw-r--r--. 2 boinc boinc    508875 Jun  4 04:24 input.tar.gz
[2025-06-04 08:32:03] -rw-------. 1 boinc boinc 180607912 Jun  4 08:04 HITS.pool.root.1
[2025-06-04 08:32:03] -rw-------. 1 boinc boinc   1556480 Jun  4 08:08 result.tar.gz
08:32:04 (20047): run_atlas exited; CPU time 50302.734744
08:32:04 (20047): called boinc_finish(0)

</stderr_txt>
]]>

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