Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:31:14 (26065): wrapper (7.7.26015): starting
04:31:14 (26065): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 04:31:14] Arguments: --nthreads 8
[2025-06-04 04:31:14] Threads: 8
[2025-06-04 04:31:14] Checking for CVMFS
[2025-06-04 04:31:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:31:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:31:15] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:31:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:31:16] 2.11.2.0 13961 32633 89364 146763 0 201 24915684 25165824 4284 130560 0 16593758 99.763 19580766 2333 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 04:31:16] CVMFS is ok
[2025-06-04 04:31:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:31:16] Checking for apptainer binary...
[2025-06-04 04:31:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:31:16] Running /usr/bin/apptainer --version
[2025-06-04 04:31:16] apptainer version 1.3.2-1.el7
[2025-06-04 04:31:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:31:29] cg-vwn452.simple-grid.lan
[2025-06-04 04:31:29] apptainer works
[2025-06-04 04:31:29] Set ATHENA_PROC_NUMBER=8
[2025-06-04 04:31:29] Set ATHENA_CORE_NUMBER=8
[2025-06-04 04:31:29] Starting ATLAS job with PandaID=6677733479
[2025-06-04 04:31:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:37:26]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:37:26] 2025-06-04 06:26:00,021 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:37:26] 2025-06-04 06:26:00,021 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:37:26] 2025-06-04 06:26:00,022 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:37:26] 2025-06-04 06:26:00,022 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:37:26] 2025-06-04 06:26:00,027 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:37:26] 2025-06-04 06:26:00,028 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,032 | INFO     | sum of deviations: 102685667051.0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,033 | INFO     | mean x: 1749011611.0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,033 | INFO     | mean y: 2403098.8538812785
[2025-06-04 08:37:26] 2025-06-04 06:26:00,033 | INFO     | -- intersect: -55141919735.609055
[2025-06-04 08:37:26] 2025-06-04 06:26:00,033 | INFO     | intersect: -55141919735.609055
[2025-06-04 08:37:26] 2025-06-04 06:26:00,033 | INFO     | chi2: 7.041104081187302
[2025-06-04 08:37:26] 2025-06-04 06:26:00,034 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 08:37:26] 2025-06-04 06:26:00,036 | INFO     | sum of deviations: 114443470365.0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,036 | INFO     | mean x: 1749011458.5
[2025-06-04 08:37:26] 2025-06-04 06:26:00,036 | INFO     | mean y: 2411136.14953271
[2025-06-04 08:37:26] 2025-06-04 06:26:00,036 | INFO     | -- intersect: -65865427495.58488
[2025-06-04 08:37:26] 2025-06-04 06:26:00,036 | INFO     | intersect: -65865427495.58488
[2025-06-04 08:37:26] 2025-06-04 06:26:00,037 | INFO     | chi2: 6.32926511315263
[2025-06-04 08:37:26] 2025-06-04 06:26:00,037 | INFO     | current chi2=6.32926511315263 (change=10.109763466451113 %)
[2025-06-04 08:37:26] 2025-06-04 06:26:00,040 | INFO     | right removable region: 213
[2025-06-04 08:37:26] 2025-06-04 06:26:00,041 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 08:37:26] 2025-06-04 06:26:00,046 | INFO     | sum of deviations: 28398834961.499992
[2025-06-04 08:37:26] 2025-06-04 06:26:00,046 | INFO     | mean x: 1749011763.5
[2025-06-04 08:37:26] 2025-06-04 06:26:00,046 | INFO     | mean y: 2455012.4439252336
[2025-06-04 08:37:26] 2025-06-04 06:26:00,046 | INFO     | -- intersect: -16342472302.371948
[2025-06-04 08:37:26] 2025-06-04 06:26:00,047 | INFO     | intersect: -16342472302.371948
[2025-06-04 08:37:26] 2025-06-04 06:26:00,047 | INFO     | chi2: 2.2617310358500466
[2025-06-04 08:37:26] 2025-06-04 06:26:00,047 | INFO     | current chi2=2.2617310358500466 (change=67.87817635173113 %)
[2025-06-04 08:37:26] 2025-06-04 06:26:00,048 | INFO     | sum of square deviations: 2830787960.0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,049 | INFO     | sum of deviations: -8592684968.000002
[2025-06-04 08:37:26] 2025-06-04 06:26:00,050 | INFO     | mean x: 1749011916.0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,050 | INFO     | mean y: 2481944.889952153
[2025-06-04 08:37:26] 2025-06-04 06:26:00,050 | INFO     | -- intersect: 5311501416.438814
[2025-06-04 08:37:26] 2025-06-04 06:26:00,050 | INFO     | intersect: 5311501416.438814
[2025-06-04 08:37:26] 2025-06-04 06:26:00,050 | INFO     | chi2: 0.8817354678386422
[2025-06-04 08:37:26] 2025-06-04 06:26:00,050 | INFO     | current chi2=0.8817354678386422 (change=61.015016645988965 %)
[2025-06-04 08:37:26] 2025-06-04 06:26:00,051 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,053 | INFO     | sum of deviations: -16044495445.5
[2025-06-04 08:37:26] 2025-06-04 06:26:00,053 | INFO     | mean x: 1749012068.5
[2025-06-04 08:37:26] 2025-06-04 06:26:00,053 | INFO     | mean y: 2487610.044117647
[2025-06-04 08:37:26] 2025-06-04 06:26:00,053 | INFO     | -- intersect: 10662565553.271122
[2025-06-04 08:37:26] 2025-06-04 06:26:00,053 | INFO     | intersect: 10662565553.271122
[2025-06-04 08:37:26] 2025-06-04 06:26:00,053 | INFO     | chi2: 0.8003689609313478
[2025-06-04 08:37:26] 2025-06-04 06:26:00,054 | INFO     | current chi2=0.8003689609313478 (change=9.22799522931117 %)
[2025-06-04 08:37:26] 2025-06-04 06:26:00,054 | INFO     | left removable region: 30
[2025-06-04 08:37:26] 2025-06-04 06:26:00,054 | INFO     | sum of square deviations: 1900284932.0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,055 | INFO     | sum of deviations: 249568385.00000256
[2025-06-04 08:37:26] 2025-06-04 06:26:00,056 | INFO     | mean x: 1749012343.0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,056 | INFO     | mean y: 2495867.950819672
[2025-06-04 08:37:26] 2025-06-04 06:26:00,056 | INFO     | -- intersect: -227205572.3106561
[2025-06-04 08:37:26] 2025-06-04 06:26:00,056 | INFO     | intersect: -227205572.3106561
[2025-06-04 08:37:26] 2025-06-04 06:26:00,056 | INFO     | chi2: 0.008096093774365534
[2025-06-04 08:37:26] 2025-06-04 06:26:00,057 | INFO     | -- intersect: -227205572.3106561
[2025-06-04 08:37:26] 2025-06-04 06:26:00,057 | INFO     | current memory leak: 0.13 B/s (using 183 data points, chi2=0.01)
[2025-06-04 08:37:26] 2025-06-04 06:26:00,058 | INFO     | ..............................
[2025-06-04 08:37:26] 2025-06-04 06:26:00,058 | INFO     | . Timing measurements:
[2025-06-04 08:37:26] 2025-06-04 06:26:00,058 | INFO     | . get job = 0 s
[2025-06-04 08:37:26] 2025-06-04 06:26:00,058 | INFO     | . initial setup = 4 s
[2025-06-04 08:37:26] 2025-06-04 06:26:00,058 | INFO     | . payload setup = 156 s
[2025-06-04 08:37:26] 2025-06-04 06:26:00,058 | INFO     | . stage-in = 0 s
[2025-06-04 08:37:26] 2025-06-04 06:26:00,058 | INFO     | . payload execution = 13454 s
[2025-06-04 08:37:26] 2025-06-04 06:26:00,059 | INFO     | . stage-out = 1 s
[2025-06-04 08:37:26] 2025-06-04 06:26:00,059 | INFO     | . log creation = 0 s
[2025-06-04 08:37:26] 2025-06-04 06:26:00,060 | INFO     | ..............................
[2025-06-04 08:37:26] 2025-06-04 06:26:00,456 | INFO     | 
[2025-06-04 08:37:26] 2025-06-04 06:26:00,456 | INFO     | job summary report
[2025-06-04 08:37:26] 2025-06-04 06:26:00,456 | INFO     | --------------------------------------------------
[2025-06-04 08:37:26] 2025-06-04 06:26:00,457 | INFO     | PanDA job id: 6677733479
[2025-06-04 08:37:26] 2025-06-04 06:26:00,457 | INFO     | task id: 45006595
[2025-06-04 08:37:26] 2025-06-04 06:26:00,457 | INFO     | errors: (none)
[2025-06-04 08:37:26] 2025-06-04 06:26:00,457 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:37:26] 2025-06-04 06:26:00,457 | INFO     | pilot state: finished 
[2025-06-04 08:37:26] 2025-06-04 06:26:00,457 | INFO     | transexitcode: 0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,457 | INFO     | exeerrorcode: 0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,457 | INFO     | exeerrordiag: 
[2025-06-04 08:37:26] 2025-06-04 06:26:00,457 | INFO     | exitcode: 0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,458 | INFO     | exitmsg: OK
[2025-06-04 08:37:26] 2025-06-04 06:26:00,458 | INFO     | cpuconsumptiontime: 49004 s
[2025-06-04 08:37:26] 2025-06-04 06:26:00,458 | INFO     | nevents: 400
[2025-06-04 08:37:26] 2025-06-04 06:26:00,458 | INFO     | neventsw: 0
[2025-06-04 08:37:26] 2025-06-04 06:26:00,458 | INFO     | pid: 7337
[2025-06-04 08:37:26] 2025-06-04 06:26:00,458 | INFO     | pgrp: 7337
[2025-06-04 08:37:26] 2025-06-04 06:26:00,458 | INFO     | corecount: 8
[2025-06-04 08:37:26] 2025-06-04 06:26:00,458 | INFO     | event service: False
[2025-06-04 08:37:26] 2025-06-04 06:26:00,458 | INFO     | sizes: {0: 2404356, 1: 2405041, 2: 2405240, 13: 2405240, 23: 2405296, 34: 2405324, 45: 2405480, 55: 2405508, 66: 2405536, 77: 2405564, 88: 2405620, 89: 2406134, 98
[2025-06-04 08:37:26] 2025-06-04 06:26:00,459 | INFO     | --------------------------------------------------
[2025-06-04 08:37:26] 2025-06-04 06:26:00,459 | INFO     | 
[2025-06-04 08:37:26] 2025-06-04 06:26:00,459 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-04 08:37:26] 2025-06-04 06:26:00,797 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,798 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,798 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,798 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,798 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,798 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,798 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,799 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,799 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,799 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,799 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,799 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,799 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,799 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,799 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,799 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,799 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,800 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:37:26] 2025-06-04 06:26:00,800 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,800 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:37:26] 2025-06-04 06:26:00,800 | INFO     | job 6677733479 has completed (purged errors)
[2025-06-04 08:37:26] 2025-06-04 06:26:00,800 | INFO     | overall cleanup function is called
[2025-06-04 08:37:26] 2025-06-04 06:26:01,816 | INFO     | --- collectZombieJob: --- 10, [7337]
[2025-06-04 08:37:26] 2025-06-04 06:26:01,816 | INFO     | zombie collector waiting for pid 7337
[2025-06-04 08:37:26] 2025-06-04 06:26:01,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:37:26] 2025-06-04 06:26:01,817 | INFO     | collected zombie processes
[2025-06-04 08:37:26] 2025-06-04 06:26:01,817 | INFO     | will attempt to kill all subprocesses of pid=7337
[2025-06-04 08:37:26] 2025-06-04 06:26:01,983 | INFO     | process IDs to be killed: [7337] (in reverse order)
[2025-06-04 08:37:26] 2025-06-04 06:26:03,035 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:37:26] 2025-06-04 06:26:03,035 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:37:26] 2025-06-04 06:26:03,038 | INFO     | did not find any defunct processes belonging to 7337
[2025-06-04 08:37:26] 2025-06-04 06:26:03,041 | INFO     | did not find any defunct processes belonging to 7337
[2025-06-04 08:37:26] 2025-06-04 06:26:03,042 | INFO     | ready for new job
[2025-06-04 08:37:26] 2025-06-04 06:26:03,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:37:26] 2025-06-04 06:26:03,044 | INFO     | **************************************
[2025-06-04 08:37:26] 2025-06-04 06:26:03,044 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:37:26] 2025-06-04 06:26:03,044 | INFO     | **************************************
[2025-06-04 08:37:26] 2025-06-04 06:26:03,045 | INFO     | 
[2025-06-04 08:37:26] 2025-06-04 06:26:03,052 | INFO     | pilot is running in a VM
[2025-06-04 08:37:26] 2025-06-04 06:26:03,053 | INFO     | architecture information:
[2025-06-04 08:37:26] 2025-06-04 06:26:03,069 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:37:26] 2025-06-04 06:26:03,336 | INFO     | cat /etc/os-release:
[2025-06-04 08:37:26] NAME="CentOS Linux"
[2025-06-04 08:37:26] VERSION="7 (Core)"
[2025-06-04 08:37:26] ID="centos"
[2025-06-04 08:37:26] ID_LIKE="rhel fedora"
[2025-06-04 08:37:26] VERSION_ID="7"
[2025-06-04 08:37:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:37:26] ANSI_COLOR="0;31"
[2025-06-04 08:37:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:37:26] HOME_URL="https://www.centos.org/"
[2025-06-04 08:37:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:37:26] 
[2025-06-04 08:37:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:37:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:37:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:37:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:37:26] 
[2025-06-04 08:37:26] 2025-06-04 06:26:03,337 | INFO     | **************************************
[2025-06-04 08:37:26] 2025-06-04 06:26:03,840 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-04 08:37:26] 2025-06-04 06:26:04,021 | INFO     | sufficient remaining disk space (497048092672 B)
[2025-06-04 08:37:26] 2025-06-04 06:26:04,021 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:37:26] 2025-06-04 06:26:04,022 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:37:26] 2025-06-04 06:26:04,022 | INFO     | update_server=False
[2025-06-04 08:37:26] 2025-06-04 06:26:04,022 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:37:26] 2025-06-04 06:26:04,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:37:26] 2025-06-04 06:26:04,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:37:26] 2025-06-04 06:26:04,024 | INFO     | aborting loop
[2025-06-04 08:37:26] 2025-06-04 06:26:04,024 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 08:37:26] 2025-06-04 06:26:04,024 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:37:26] 2025-06-04 06:26:04,024 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:37:26] 2025-06-04 06:26:04,024 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:37:26] 2025-06-04 06:26:04,029 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:37:26] 2025-06-04 06:26:04,135 | INFO     | all data control threads have been joined
[2025-06-04 08:37:26] 2025-06-04 06:26:04,392 | INFO     | all job control threads have been joined
[2025-06-04 08:37:26] 2025-06-04 06:26:04,533 | INFO     | all payload control threads have been joined
[2025-06-04 08:37:26] 2025-06-04 06:26:05,028 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:05,033 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:05,141 | INFO     | [data] control thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:05,191 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:05,279 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:37:26] 2025-06-04 06:26:05,397 | INFO     | [job] control thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:05,443 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:05,444 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:05,539 | INFO     | [payload] control thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:06,030 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:06,075 | INFO     | [job] validate thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:06,084 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:06,094 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:06,270 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:06,285 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:08,038 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:14,891 | INFO     | job.realtimelogging is not enabled
[2025-06-04 08:37:26] 2025-06-04 06:26:15,897 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:37:26] 2025-06-04 06:26:17,549 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140350408058688)>', '<ExcThread(monitor, started 140349976594176)>']
[2025-06-04 08:37:26] 2025-06-04 06:26:18,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:37:26] 2025-06-04 06:26:18,107 | INFO     | [monitor] control thread has ended
[2025-06-04 08:37:26] 2025-06-04 06:26:22,575 | INFO     | all workflow threads have been joined
[2025-06-04 08:37:26] 2025-06-04 06:26:22,575 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:37:26] 2025-06-04 06:26:22,576 | INFO     | traces error code: 0
[2025-06-04 08:37:26] 2025-06-04 06:26:22,576 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:37:26] 2025-06-04 06:26:22,874 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:37:26] 2025-06-04 06:26:22,920 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:37:26] 2025-06-04 06:26:23,011 [wrapper] pilotpid: 30585
[2025-06-04 08:37:26] 2025-06-04 06:26:23,085 [wrapper] Pilot exit status: 0
[2025-06-04 08:37:26] 2025-06-04 06:26:23,504 [wrapper] pandaids: 6677733479
[2025-06-04 08:37:26] 2025-06-04 06:26:24,111 [wrapper] cleanup supervisor_pilot 12553 30586
[2025-06-04 08:37:26] 2025-06-04 06:26:24,159 [wrapper] Test setup, not cleaning
[2025-06-04 08:37:26] 2025-06-04 06:26:24,202 [wrapper] apfmon messages muted
[2025-06-04 08:37:26] 2025-06-04 06:26:24,241 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:37:26] 2025-06-04 06:26:24,283 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:37:26]  *** Error codes and diagnostics ***
[2025-06-04 08:37:26]     "exeErrorCode": 0,
[2025-06-04 08:37:26]     "exeErrorDiag": "",
[2025-06-04 08:37:26]     "pilotErrorCode": 0,
[2025-06-04 08:37:26]     "pilotErrorDiag": "",
[2025-06-04 08:37:26]  *** Listing of results directory ***
[2025-06-04 08:37:26] total 386488
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc    495897 Jun  3 17:35 pilot3.tar.gz
[2025-06-04 08:37:26] -rwx------. 1 boinc boinc     37140 Jun  3 17:43 runpilot2-wrapper.sh
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc      5111 Jun  3 17:43 queuedata.json
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc       100 Jun  4 04:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:37:26] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 04:31 run_atlas
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc       105 Jun  4 04:31 job.xml
[2025-06-04 08:37:26] -rw-r--r--. 2 boinc boinc 214846437 Jun  4 04:31 EVNT.45006593._001504.pool.root.1
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc      6390 Jun  4 04:31 init_data.xml
[2025-06-04 08:37:26] -rw-r--r--. 2 boinc boinc     15093 Jun  4 04:31 start_atlas.sh
[2025-06-04 08:37:26] drwxrwx--x. 2 boinc boinc        68 Jun  4 04:31 shared
[2025-06-04 08:37:26] -rw-r--r--. 2 boinc boinc    508875 Jun  4 04:31 input.tar.gz
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc         0 Jun  4 04:31 boinc_lockfile
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc      2525 Jun  4 04:31 pandaJob.out
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc    986077 Jun  4 04:34 agis_schedconf.cvmfs.json
[2025-06-04 08:37:26] drwx------. 4 boinc boinc      4096 Jun  4 04:34 pilot3
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc 173979008 Jun  4 08:23 HITS.45006595._037467.pool.root.1
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc       531 Jun  4 08:24 boinc_task_state.xml
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc      1018 Jun  4 08:24 memory_monitor_summary.json
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc   1603667 Jun  4 08:24 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc    377825 Jun  4 08:24 log.45006595._037467.job.log.tgz.1
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc        95 Jun  4 08:25 pilot_heartbeat.json
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc      7691 Jun  4 08:26 heartbeat.json
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc      4611 Jun  4 08:26 pilotlog.txt
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc   1183108 Jun  4 08:26 log.45006595._037467.job.log.1
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc       357 Jun  4 08:26 output.list
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc       620 Jun  4 08:26 runtime_log
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc   1576960 Jun  4 08:26 result.tar.gz
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc       657 Jun  4 08:26 VNtMDmByig7n9Rq4apOajLDm4fhM0noT9bVof3QYDmI7YKDmHbyPbn.diag
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc      8659 Jun  4 08:26 runtime_log.err
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc      8192 Jun  4 08:37 boinc_mmap_file
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc        28 Jun  4 08:37 wrapper_checkpoint.txt
[2025-06-04 08:37:26] -rw-r--r--. 1 boinc boinc     20498 Jun  4 08:37 stderr.txt
[2025-06-04 08:37:26] HITS file was successfully produced:
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc 173979008 Jun  4 08:23 shared/HITS.pool.root.1
[2025-06-04 08:37:26]  *** Contents of shared directory: ***
[2025-06-04 08:37:26] total 381772
[2025-06-04 08:37:26] -rw-r--r--. 2 boinc boinc 214846437 Jun  4 04:31 ATLAS.root_0
[2025-06-04 08:37:26] -rw-r--r--. 2 boinc boinc     15093 Jun  4 04:31 start_atlas.sh
[2025-06-04 08:37:26] -rw-r--r--. 2 boinc boinc    508875 Jun  4 04:31 input.tar.gz
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc 173979008 Jun  4 08:23 HITS.pool.root.1
[2025-06-04 08:37:26] -rw-------. 1 boinc boinc   1576960 Jun  4 08:26 result.tar.gz
08:37:28 (26065): run_atlas exited; CPU time 49196.364688
08:37:28 (26065): called boinc_finish(0)

</stderr_txt>
]]>

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