Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:12:15 (16971): wrapper (7.7.26015): starting
05:12:15 (16971): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 05:12:15] Arguments: --nthreads 8
[2025-06-04 05:12:15] Threads: 8
[2025-06-04 05:12:15] Checking for CVMFS
[2025-06-04 05:12:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:12:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:12:16] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:12:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:12:16] 2.11.2.0 555 32764 98980 146765 3 114 14253881 25165825 4404 130560 0 17450006 99.815 20340371 2719 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 05:12:16] CVMFS is ok
[2025-06-04 05:12:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:12:16] Checking for apptainer binary...
[2025-06-04 05:12:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 05:12:16] Running /usr/bin/apptainer --version
[2025-06-04 05:12:16] apptainer version 1.3.2-1.el7
[2025-06-04 05:12:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:12:18] cg-vwn340.simple-grid.lan
[2025-06-04 05:12:18] apptainer works
[2025-06-04 05:12:18] Set ATHENA_PROC_NUMBER=8
[2025-06-04 05:12:18] Set ATHENA_CORE_NUMBER=8
[2025-06-04 05:12:18] Starting ATLAS job with PandaID=6677677147
[2025-06-04 05:12:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:21:36]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:21:36] 2025-06-04 06:54:30,496 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6677677147/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:21:36] 2025-06-04 06:54:30,497 | INFO     | extracted standard info from prmon json
[2025-06-04 09:21:36] 2025-06-04 06:54:30,497 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:21:36] 2025-06-04 06:54:30,497 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:21:36] 2025-06-04 06:54:30,497 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:21:36] 2025-06-04 06:54:30,497 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:21:36] 2025-06-04 06:54:30,502 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:21:36] 2025-06-04 06:54:30,503 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 09:21:36] 2025-06-04 06:54:30,509 | INFO     | sum of deviations: 30148499395.000004
[2025-06-04 09:21:36] 2025-06-04 06:54:30,509 | INFO     | mean x: 1749013374.5
[2025-06-04 09:21:36] 2025-06-04 06:54:30,509 | INFO     | mean y: 2445801.111111111
[2025-06-04 09:21:36] 2025-06-04 06:54:30,509 | INFO     | -- intersect: -16871958958.100782
[2025-06-04 09:21:36] 2025-06-04 06:54:30,509 | INFO     | intersect: -16871958958.100782
[2025-06-04 09:21:36] 2025-06-04 06:54:30,510 | INFO     | chi2: 2.3359866822436013
[2025-06-04 09:21:36] 2025-06-04 06:54:30,510 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 09:21:36] 2025-06-04 06:54:30,512 | INFO     | sum of deviations: 43343824195.00001
[2025-06-04 09:21:36] 2025-06-04 06:54:30,512 | INFO     | mean x: 1749013222.0
[2025-06-04 09:21:36] 2025-06-04 06:54:30,512 | INFO     | mean y: 2455099.9763033176
[2025-06-04 09:21:36] 2025-06-04 06:54:30,512 | INFO     | -- intersect: -26023356634.306164
[2025-06-04 09:21:36] 2025-06-04 06:54:30,512 | INFO     | intersect: -26023356634.306164
[2025-06-04 09:21:36] 2025-06-04 06:54:30,513 | INFO     | chi2: 1.5608199624643389
[2025-06-04 09:21:36] 2025-06-04 06:54:30,513 | INFO     | current chi2=1.5608199624643389 (change=33.183696023247556 %)
[2025-06-04 09:21:36] 2025-06-04 06:54:30,513 | INFO     | sum of square deviations: 2710627567.5
[2025-06-04 09:21:36] 2025-06-04 06:54:30,515 | INFO     | sum of deviations: 42104992214.0
[2025-06-04 09:21:36] 2025-06-04 06:54:30,515 | INFO     | mean x: 1749013069.5
[2025-06-04 09:21:36] 2025-06-04 06:54:30,515 | INFO     | mean y: 2454165.5533980583
[2025-06-04 09:21:36] 2025-06-04 06:54:30,515 | INFO     | -- intersect: -27165491204.898804
[2025-06-04 09:21:36] 2025-06-04 06:54:30,515 | INFO     | intersect: -27165491204.898804
[2025-06-04 09:21:36] 2025-06-04 06:54:30,515 | INFO     | chi2: 1.5612798291924077
[2025-06-04 09:21:36] 2025-06-04 06:54:30,515 | INFO     | current chi2=1.5612798291924077 (change=-0.0294631500831644 %)
[2025-06-04 09:21:36] 2025-06-04 06:54:30,516 | INFO     | right removable region: 205
[2025-06-04 09:21:36] 2025-06-04 06:54:30,516 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 09:21:36] 2025-06-04 06:54:30,518 | INFO     | sum of deviations: -5410209926.000001
[2025-06-04 09:21:36] 2025-06-04 06:54:30,518 | INFO     | mean x: 1749013527.0
[2025-06-04 09:21:36] 2025-06-04 06:54:30,518 | INFO     | mean y: 2471139.7061611377
[2025-06-04 09:21:36] 2025-06-04 06:54:30,518 | INFO     | -- intersect: 3251033816.079992
[2025-06-04 09:21:36] 2025-06-04 06:54:30,518 | INFO     | intersect: 3251033816.079992
[2025-06-04 09:21:36] 2025-06-04 06:54:30,518 | INFO     | chi2: 0.8070241915236701
[2025-06-04 09:21:36] 2025-06-04 06:54:30,518 | INFO     | current chi2=0.8070241915236701 (change=65.45253456888021 %)
[2025-06-04 09:21:36] 2025-06-04 06:54:30,519 | INFO     | sum of square deviations: 2710627567.5
[2025-06-04 09:21:36] 2025-06-04 06:54:30,520 | INFO     | sum of deviations: -5422128990.499999
[2025-06-04 09:21:36] 2025-06-04 06:54:30,520 | INFO     | mean x: 1749013679.5
[2025-06-04 09:21:36] 2025-06-04 06:54:30,521 | INFO     | mean y: 2471123.7427184465
[2025-06-04 09:21:36] 2025-06-04 06:54:30,521 | INFO     | -- intersect: 3501062331.9567266
[2025-06-04 09:21:36] 2025-06-04 06:54:30,521 | INFO     | intersect: 3501062331.9567266
[2025-06-04 09:21:36] 2025-06-04 06:54:30,521 | INFO     | chi2: 0.7981443233266216
[2025-06-04 09:21:36] 2025-06-04 06:54:30,521 | INFO     | current chi2=0.7981443233266216 (change=1.1003224302710521 %)
[2025-06-04 09:21:36] 2025-06-04 06:54:30,521 | INFO     | left removable region: 20
[2025-06-04 09:21:36] 2025-06-04 06:54:30,522 | INFO     | sum of square deviations: 1963274020.0
[2025-06-04 09:21:36] 2025-06-04 06:54:30,523 | INFO     | sum of deviations: 4375626990.000003
[2025-06-04 09:21:36] 2025-06-04 06:54:30,523 | INFO     | mean x: 1749013649.0
[2025-06-04 09:21:36] 2025-06-04 06:54:30,523 | INFO     | mean y: 2483974.92972973
[2025-06-04 09:21:36] 2025-06-04 06:54:30,523 | INFO     | -- intersect: -3895612393.932112
[2025-06-04 09:21:36] 2025-06-04 06:54:30,523 | INFO     | intersect: -3895612393.932112
[2025-06-04 09:21:36] 2025-06-04 06:54:30,524 | INFO     | chi2: 0.00021572597847790279
[2025-06-04 09:21:36] 2025-06-04 06:54:30,532 | INFO     | -- intersect: -3895612393.932112
[2025-06-04 09:21:36] 2025-06-04 06:54:30,532 | INFO     | current memory leak: 2.23 B/s (using 185 data points, chi2=0.00)
[2025-06-04 09:21:36] 2025-06-04 06:54:30,533 | INFO     | ..............................
[2025-06-04 09:21:36] 2025-06-04 06:54:30,533 | INFO     | . Timing measurements:
[2025-06-04 09:21:36] 2025-06-04 06:54:30,533 | INFO     | . get job = 0 s
[2025-06-04 09:21:36] 2025-06-04 06:54:30,533 | INFO     | . initial setup = 2 s
[2025-06-04 09:21:36] 2025-06-04 06:54:30,534 | INFO     | . payload setup = 15 s
[2025-06-04 09:21:36] 2025-06-04 06:54:30,534 | INFO     | . stage-in = 0 s
[2025-06-04 09:21:36] 2025-06-04 06:54:30,534 | INFO     | . payload execution = 13175 s
[2025-06-04 09:21:36] 2025-06-04 06:54:30,534 | INFO     | . stage-out = 3 s
[2025-06-04 09:21:36] 2025-06-04 06:54:30,534 | INFO     | . log creation = 1 s
[2025-06-04 09:21:36] 2025-06-04 06:54:30,534 | INFO     | ..............................
[2025-06-04 09:21:36] 2025-06-04 06:54:31,151 | INFO     | 
[2025-06-04 09:21:36] 2025-06-04 06:54:31,151 | INFO     | job summary report
[2025-06-04 09:21:36] 2025-06-04 06:54:31,151 | INFO     | --------------------------------------------------
[2025-06-04 09:21:36] 2025-06-04 06:54:31,151 | INFO     | PanDA job id: 6677677147
[2025-06-04 09:21:36] 2025-06-04 06:54:31,151 | INFO     | task id: 45006595
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | errors: (none)
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | pilot state: finished 
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | transexitcode: 0
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | exeerrorcode: 0
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | exeerrordiag: 
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | exitcode: 0
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | exitmsg: OK
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | cpuconsumptiontime: 49974 s
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | nevents: 400
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | neventsw: 0
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | pid: 29210
[2025-06-04 09:21:36] 2025-06-04 06:54:31,152 | INFO     | pgrp: 29210
[2025-06-04 09:21:36] 2025-06-04 06:54:31,153 | INFO     | corecount: 8
[2025-06-04 09:21:36] 2025-06-04 06:54:31,153 | INFO     | event service: False
[2025-06-04 09:21:36] 2025-06-04 06:54:31,153 | INFO     | sizes: {0: 2405012, 1: 2405211, 9: 2405417, 12: 2405445, 13195: 2434964, 13199: 2444091, 13290: 2444205}
[2025-06-04 09:21:36] 2025-06-04 06:54:31,153 | INFO     | --------------------------------------------------
[2025-06-04 09:21:36] 2025-06-04 06:54:31,153 | INFO     | 
[2025-06-04 09:21:36] 2025-06-04 06:54:31,153 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 09:21:36] 2025-06-04 06:54:31,779 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,779 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,779 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,779 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,780 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,780 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,780 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,780 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,780 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,780 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,780 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,780 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,780 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,781 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:21:36] 2025-06-04 06:54:31,781 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,781 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 06:54:31,781 | INFO     | job 6677677147 has completed (purged errors)
[2025-06-04 09:21:36] 2025-06-04 06:54:31,781 | INFO     | overall cleanup function is called
[2025-06-04 09:21:36] 2025-06-04 06:54:32,790 | INFO     | --- collectZombieJob: --- 10, [29210]
[2025-06-04 09:21:36] 2025-06-04 06:54:32,790 | INFO     | zombie collector waiting for pid 29210
[2025-06-04 09:21:36] 2025-06-04 06:54:32,790 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:21:36] 2025-06-04 06:54:32,790 | INFO     | collected zombie processes
[2025-06-04 09:21:36] 2025-06-04 06:54:32,790 | INFO     | will attempt to kill all subprocesses of pid=29210
[2025-06-04 09:21:36] 2025-06-04 06:54:32,951 | INFO     | process IDs to be killed: [29210] (in reverse order)
[2025-06-04 09:21:36] 2025-06-04 06:54:33,933 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:21:36] 2025-06-04 06:54:33,934 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:21:36] 2025-06-04 06:54:33,937 | INFO     | did not find any defunct processes belonging to 29210
[2025-06-04 09:21:36] 2025-06-04 06:54:33,940 | INFO     | did not find any defunct processes belonging to 29210
[2025-06-04 09:21:36] 2025-06-04 06:54:33,940 | INFO     | ready for new job
[2025-06-04 09:21:36] 2025-06-04 06:54:33,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:21:36] 2025-06-04 06:54:33,942 | INFO     | **************************************
[2025-06-04 09:21:36] 2025-06-04 06:54:33,943 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:21:36] 2025-06-04 06:54:33,943 | INFO     | **************************************
[2025-06-04 09:21:36] 2025-06-04 06:54:33,943 | INFO     | 
[2025-06-04 09:21:36] 2025-06-04 06:54:33,943 | INFO     | pilot is running in a VM
[2025-06-04 09:21:36] 2025-06-04 06:54:33,944 | INFO     | architecture information:
[2025-06-04 09:21:36] 2025-06-04 06:54:33,958 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:21:36] 2025-06-04 06:54:34,215 | INFO     | cat /etc/os-release:
[2025-06-04 09:21:36] NAME="CentOS Linux"
[2025-06-04 09:21:36] VERSION="7 (Core)"
[2025-06-04 09:21:36] ID="centos"
[2025-06-04 09:21:36] ID_LIKE="rhel fedora"
[2025-06-04 09:21:36] VERSION_ID="7"
[2025-06-04 09:21:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:21:36] ANSI_COLOR="0;31"
[2025-06-04 09:21:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:21:36] HOME_URL="https://www.centos.org/"
[2025-06-04 09:21:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:21:36] 
[2025-06-04 09:21:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:21:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:21:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:21:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:21:36] 
[2025-06-04 09:21:36] 2025-06-04 06:54:34,216 | INFO     | **************************************
[2025-06-04 09:21:36] 2025-06-04 06:54:34,719 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 09:21:36] 2025-06-04 06:54:35,009 | INFO     | sufficient remaining disk space (496723034112 B)
[2025-06-04 09:21:36] 2025-06-04 06:54:35,009 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:21:36] 2025-06-04 06:54:35,009 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:21:36] 2025-06-04 06:54:35,010 | INFO     | update_server=False
[2025-06-04 09:21:36] 2025-06-04 06:54:35,010 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:21:36] 2025-06-04 06:54:35,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:21:36] 2025-06-04 06:54:35,299 | INFO     | all data control threads have been joined
[2025-06-04 09:21:36] 2025-06-04 06:54:35,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:21:36] 2025-06-04 06:54:35,366 | INFO     | aborting loop
[2025-06-04 09:21:36] 2025-06-04 06:54:35,372 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:21:36] 2025-06-04 06:54:35,542 | INFO     | all payload control threads have been joined
[2025-06-04 09:21:36] 2025-06-04 06:54:35,668 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:21:36] 2025-06-04 06:54:35,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:21:36] 2025-06-04 06:54:35,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:21:36] 2025-06-04 06:54:35,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:21:36] 2025-06-04 06:54:35,966 | INFO     | all job control threads have been joined
[2025-06-04 09:21:36] 2025-06-04 06:54:36,018 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:36,247 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:36,305 | INFO     | [data] control thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:36,372 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:36,541 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:36,548 | INFO     | [payload] control thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:36,688 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:36,692 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:36,885 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:36,972 | INFO     | [job] control thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:36,988 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:37,021 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:37,401 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:37,465 | INFO     | [job] validate thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:37,504 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:39,381 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:21:36] 2025-06-04 06:54:39,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140429146154816)>', '<ExcThread(monitor, started 140428577859328)>']
[2025-06-04 09:21:36] 2025-06-04 06:54:39,692 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:21:36] 2025-06-04 06:54:39,692 | INFO     | [monitor] control thread has ended
[2025-06-04 09:21:36] 2025-06-04 06:54:44,550 | INFO     | all workflow threads have been joined
[2025-06-04 09:21:36] 2025-06-04 06:54:44,550 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:21:36] 2025-06-04 06:54:44,550 | INFO     | traces error code: 0
[2025-06-04 09:21:36] 2025-06-04 06:54:44,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:21:36] 2025-06-04 06:54:44,995 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:21:36] 2025-06-04 06:54:45,118 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:21:36] 2025-06-04 06:54:45,216 [wrapper] pilotpid: 20661
[2025-06-04 09:21:36] 2025-06-04 06:54:45,306 [wrapper] Pilot exit status: 0
[2025-06-04 09:21:36] 2025-06-04 06:54:45,696 [wrapper] pandaids: 6677677147
[2025-06-04 09:21:36] 2025-06-04 06:54:46,647 [wrapper] cleanup supervisor_pilot 19053 20662
[2025-06-04 09:21:36] 2025-06-04 06:54:46,744 [wrapper] Test setup, not cleaning
[2025-06-04 09:21:36] 2025-06-04 06:54:46,836 [wrapper] apfmon messages muted
[2025-06-04 09:21:36] 2025-06-04 06:54:46,938 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:21:36] 2025-06-04 06:54:47,038 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:21:36]  *** Error codes and diagnostics ***
[2025-06-04 09:21:36]     "exeErrorCode": 0,
[2025-06-04 09:21:36]     "exeErrorDiag": "",
[2025-06-04 09:21:36]     "pilotErrorCode": 0,
[2025-06-04 09:21:36]     "pilotErrorDiag": "",
[2025-06-04 09:21:36]  *** Listing of results directory ***
[2025-06-04 09:21:36] total 394036
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc    495897 Jun  3 17:19 pilot3.tar.gz
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc      5111 Jun  3 17:34 queuedata.json
[2025-06-04 09:21:36] -rwx------. 1 boinc boinc     37140 Jun  3 17:35 runpilot2-wrapper.sh
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc       100 Jun  4 05:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:21:36] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 05:12 run_atlas
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc       105 Jun  4 05:12 job.xml
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc      6391 Jun  4 05:12 init_data.xml
[2025-06-04 09:21:36] -rw-r--r--. 2 boinc boinc 216119589 Jun  4 05:12 EVNT.45006593._001488.pool.root.1
[2025-06-04 09:21:36] -rw-r--r--. 2 boinc boinc     15093 Jun  4 05:12 start_atlas.sh
[2025-06-04 09:21:36] drwxrwx--x. 2 boinc boinc        68 Jun  4 05:12 shared
[2025-06-04 09:21:36] -rw-r--r--. 2 boinc boinc    508880 Jun  4 05:12 input.tar.gz
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc         0 Jun  4 05:12 boinc_lockfile
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc      2524 Jun  4 05:12 pandaJob.out
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc    986077 Jun  4 05:12 agis_schedconf.cvmfs.json
[2025-06-04 09:21:36] drwx------. 4 boinc boinc      4096 Jun  4 05:12 pilot3
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc 180500067 Jun  4 08:51 HITS.45006595._037029.pool.root.1
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc       531 Jun  4 08:51 boinc_task_state.xml
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc      1031 Jun  4 08:52 memory_monitor_summary.json
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc   1603667 Jun  4 08:52 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc    366899 Jun  4 08:52 log.45006595._037029.job.log.tgz.1
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc        95 Jun  4 08:54 pilot_heartbeat.json
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc      7686 Jun  4 08:54 heartbeat.json
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc      4417 Jun  4 08:54 pilotlog.txt
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc   1158717 Jun  4 08:54 log.45006595._037029.job.log.1
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc       357 Jun  4 08:54 output.list
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc       620 Jun  4 08:54 runtime_log
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc   1546240 Jun  4 08:54 result.tar.gz
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc      8673 Jun  4 08:54 runtime_log.err
[2025-06-04 09:21:36] -rw-------. 1 boinc boinc       657 Jun  4 08:54 kJwMDmArig7n9Rq4apOajLDm4fhM0noT9bVof3QYDmQ4YKDmCMCuBn.diag
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc        28 Jun  4 09:21 wrapper_checkpoint.txt
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc      8192 Jun  4 09:21 boinc_mmap_file
[2025-06-04 09:21:36] -rw-r--r--. 1 boinc boinc     20489 Jun  4 09:21 stderr.txt
[2025-06-04 09:21:37] HITS file was successfully produced:
[2025-06-04 09:21:37] -rw-------. 1 boinc boinc 180500067 Jun  4 08:51 shared/HITS.pool.root.1
[2025-06-04 09:21:37]  *** Contents of shared directory: ***
[2025-06-04 09:21:37] total 389356
[2025-06-04 09:21:37] -rw-r--r--. 2 boinc boinc 216119589 Jun  4 05:12 ATLAS.root_0
[2025-06-04 09:21:37] -rw-r--r--. 2 boinc boinc     15093 Jun  4 05:12 start_atlas.sh
[2025-06-04 09:21:37] -rw-r--r--. 2 boinc boinc    508880 Jun  4 05:12 input.tar.gz
[2025-06-04 09:21:37] -rw-------. 1 boinc boinc 180500067 Jun  4 08:51 HITS.pool.root.1
[2025-06-04 09:21:37] -rw-------. 1 boinc boinc   1546240 Jun  4 08:54 result.tar.gz
09:21:38 (16971): run_atlas exited; CPU time 50142.154885
09:21:38 (16971): called boinc_finish(0)

</stderr_txt>
]]>

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