Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:10:51 (774217): wrapper (7.7.26015): starting
14:10:51 (774217): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 14:10:51] Arguments: --nthreads 8
[2025-06-03 14:10:51] Threads: 8
[2025-06-03 14:10:51] Checking for CVMFS
[2025-06-03 14:10:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 14:10:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 14:10:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 14:10:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 14:10:52] 2.12.6.0 5559 238 58956 146751 1 79 23611057 40960000 4717 16776704 0 1394900 99.998 76754 48333 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 14:10:52] CVMFS is ok
[2025-06-03 14:10:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 14:10:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 14:10:52] Further information can be found at the LHC@home message board.
[2025-06-03 14:10:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 14:10:52] Checking for apptainer binary...
[2025-06-03 14:10:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 14:10:52] Running /usr/bin/apptainer --version
[2025-06-03 14:10:52] apptainer version 1.4.1-1.el9
[2025-06-03 14:10:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 14:10:52] c6-8-12-3.aglt2.org
[2025-06-03 14:10:52] apptainer works
[2025-06-03 14:10:52] Set ATHENA_PROC_NUMBER=8
[2025-06-03 14:10:52] Set ATHENA_CORE_NUMBER=8
[2025-06-03 14:10:52] Starting ATLAS job with PandaID=6667366023
[2025-06-03 14:10:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 15:48:11]  *** The last 200 lines of the pilot log: ***
[2025-06-03 15:48:11]  protocol_id=None
[2025-06-03 15:48:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 15:48:11]  replicas=None
[2025-06-03 15:48:11]  scope=mc23_13p6TeV
[2025-06-03 15:48:11]  status=None
[2025-06-03 15:48:11]  status_code=0
[2025-06-03 15:48:11]  storage_token=
[2025-06-03 15:48:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6667366023/log.44871837._071147.job.log.tgz.1
[2025-06-03 15:48:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7c/ee/log.44871837._071147.job.log.tgz.1
[2025-06-03 15:48:11]  workdir=None
[2025-06-03 15:48:11] ]
[2025-06-03 15:48:11] 2025-06-03 19:47:47,371 | INFO     | transferring file log.44871837._071147.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6667366023/log.44871837._071147.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 15:48:11] 2025-06-03 19:47:47,371 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6667366023/log.44871837._071147.job.log.tgz.1 /tmp/boinchome/slots/0/log.44871837._071147.job
[2025-06-03 15:48:11] 2025-06-03 19:47:47,386 | INFO     | adding to output.list: log.44871837._071147.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7c/ee/log.44871837._071147.job.log.tg
[2025-06-03 15:48:11] 2025-06-03 19:47:47,387 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 15:48:11] 2025-06-03 19:47:47,387 | INFO     | summary of transferred files:
[2025-06-03 15:48:11] 2025-06-03 19:47:47,387 | INFO     |  -- lfn=log.44871837._071147.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 15:48:11] 2025-06-03 19:47:47,387 | INFO     | stage-out finished correctly
[2025-06-03 15:48:11] 2025-06-03 19:47:48,255 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 15:48:11] 2025-06-03 19:47:48,334 | INFO     | job 6667366023 has state=finished
[2025-06-03 15:48:11] 2025-06-03 19:47:48,335 | INFO     | preparing for final server update for job 6667366023 in state='finished'
[2025-06-03 15:48:11] 2025-06-03 19:47:48,336 | INFO     | this job has now completed (state=finished)
[2025-06-03 15:48:11] 2025-06-03 19:47:48,336 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 15:48:11] 2025-06-03 19:47:48,336 | INFO     | log transfer has been attempted: DONE
[2025-06-03 15:48:11] 2025-06-03 19:47:48,336 | INFO     | job 6667366023 has finished - writing final server update
[2025-06-03 15:48:11] 2025-06-03 19:47:48,336 | INFO     | total number of processed events: 400 (read)
[2025-06-03 15:48:11] 2025-06-03 19:47:48,352 | INFO     | executing command: lscpu
[2025-06-03 15:48:11] 2025-06-03 19:47:48,406 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 15:48:11] 2025-06-03 19:47:51,963 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 15:48:11] 2025-06-03 19:47:51,964 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6667366023/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 15:48:11] 2025-06-03 19:47:51,965 | INFO     | extracted standard info from prmon json
[2025-06-03 15:48:11] 2025-06-03 19:47:51,965 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 15:48:11] 2025-06-03 19:47:51,965 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 15:48:11] 2025-06-03 19:47:51,966 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 15:48:11] 2025-06-03 19:47:51,966 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 15:48:11] 2025-06-03 19:47:51,968 | INFO     | fitting pss+swap vs Time
[2025-06-03 15:48:11] 2025-06-03 19:47:51,969 | INFO     | sum of square deviations: 211285822.0
[2025-06-03 15:48:11] 2025-06-03 19:47:51,969 | INFO     | sum of deviations: 9850366589.5
[2025-06-03 15:48:11] 2025-06-03 19:47:51,969 | INFO     | mean x: 1748977247.5
[2025-06-03 15:48:11] 2025-06-03 19:47:51,969 | INFO     | mean y: 2148245.534090909
[2025-06-03 15:48:11] 2025-06-03 19:47:51,969 | INFO     | -- intersect: -81537005122.59712
[2025-06-03 15:48:11] 2025-06-03 19:47:51,970 | INFO     | intersect: -81537005122.59712
[2025-06-03 15:48:11] 2025-06-03 19:47:51,970 | INFO     | chi2: 0.8977836018231378
[2025-06-03 15:48:11] 2025-06-03 19:47:51,970 | INFO     | -- intersect: -81537005122.59712
[2025-06-03 15:48:11] 2025-06-03 19:47:51,970 | INFO     | current memory leak: 46.62 B/s (using 88 data points, chi2=0.90)
[2025-06-03 15:48:11] 2025-06-03 19:47:51,971 | INFO     | ..............................
[2025-06-03 15:48:11] 2025-06-03 19:47:51,971 | INFO     | . Timing measurements:
[2025-06-03 15:48:11] 2025-06-03 19:47:51,971 | INFO     | . get job = 0 s
[2025-06-03 15:48:11] 2025-06-03 19:47:51,971 | INFO     | . initial setup = 2 s
[2025-06-03 15:48:11] 2025-06-03 19:47:51,971 | INFO     | . payload setup = 7 s
[2025-06-03 15:48:11] 2025-06-03 19:47:51,971 | INFO     | . stage-in = 0 s
[2025-06-03 15:48:11] 2025-06-03 19:47:51,971 | INFO     | . payload execution = 5778 s
[2025-06-03 15:48:11] 2025-06-03 19:47:51,971 | INFO     | . stage-out = 0 s
[2025-06-03 15:48:11] 2025-06-03 19:47:51,971 | INFO     | . log creation = 0 s
[2025-06-03 15:48:11] 2025-06-03 19:47:51,971 | INFO     | ..............................
[2025-06-03 15:48:11] 2025-06-03 19:47:52,029 | INFO     | 
[2025-06-03 15:48:11] 2025-06-03 19:47:52,030 | INFO     | job summary report
[2025-06-03 15:48:11] 2025-06-03 19:47:52,030 | INFO     | --------------------------------------------------
[2025-06-03 15:48:11] 2025-06-03 19:47:52,030 | INFO     | PanDA job id: 6667366023
[2025-06-03 15:48:11] 2025-06-03 19:47:52,030 | INFO     | task id: 44871837
[2025-06-03 15:48:11] 2025-06-03 19:47:52,030 | INFO     | errors: (none)
[2025-06-03 15:48:11] 2025-06-03 19:47:52,030 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 15:48:11] 2025-06-03 19:47:52,030 | INFO     | pilot state: finished 
[2025-06-03 15:48:11] 2025-06-03 19:47:52,030 | INFO     | transexitcode: 0
[2025-06-03 15:48:11] 2025-06-03 19:47:52,030 | INFO     | exeerrorcode: 0
[2025-06-03 15:48:11] 2025-06-03 19:47:52,030 | INFO     | exeerrordiag: 
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | exitcode: 0
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | exitmsg: OK
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | cpuconsumptiontime: 40207 s
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | nevents: 400
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | neventsw: 0
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | pid: 790248
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | pgrp: 790248
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | corecount: 8
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | event service: False
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | sizes: {0: 2405120, 1: 2405234, 4: 2405468, 11: 2405496, 5790: 2432077, 5791: 2441202, 5795: 2441316}
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | --------------------------------------------------
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | 
[2025-06-03 15:48:11] 2025-06-03 19:47:52,031 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 15:48:11] 2025-06-03 19:47:52,048 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,048 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,048 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,048 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,048 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,048 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,049 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 15:48:11] 2025-06-03 19:47:52,050 | INFO     | job 6667366023 has completed (purged errors)
[2025-06-03 15:48:11] 2025-06-03 19:47:52,050 | INFO     | overall cleanup function is called
[2025-06-03 15:48:11] 2025-06-03 19:47:52,706 | WARNING  | process 790248 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 15:48:11] 2025-06-03 19:47:52,887 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 15:48:11] 2025-06-03 19:47:52,888 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 15:48:11] 2025-06-03 19:47:52,889 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-6667366023/payload.stdout) since it has not been created yet
[2025-06-03 15:48:11] 2025-06-03 19:47:52,889 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 15:48:11] 2025-06-03 19:47:52,904 | INFO     | sufficient remaining disk space (53739520000 B)
[2025-06-03 15:48:11] 2025-06-03 19:47:52,904 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-06-03 15:48:11] 2025-06-03 19:47:52,904 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6667366023/HITS.44871837._071147.pool.root.1 since it does not exist
[2025-06-03 15:48:11] 2025-06-03 19:47:53,057 | INFO     | --- collectZombieJob: --- 10, [790248]
[2025-06-03 15:48:11] 2025-06-03 19:47:53,057 | INFO     | zombie collector waiting for pid 790248
[2025-06-03 15:48:11] 2025-06-03 19:47:53,058 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 15:48:11] 2025-06-03 19:47:53,058 | INFO     | collected zombie processes
[2025-06-03 15:48:11] 2025-06-03 19:47:53,058 | INFO     | will attempt to kill all subprocesses of pid=790248
[2025-06-03 15:48:11] 2025-06-03 19:47:53,224 | INFO     | number of running child processes to parent process 790248: 1
[2025-06-03 15:48:11] 2025-06-03 19:47:53,225 | INFO     | maximum number of monitored processes: 6
[2025-06-03 15:48:11] 2025-06-03 19:47:53,225 | INFO     | aborting job monitoring since job object (job id=6667366023) has expired
[2025-06-03 15:48:11] 2025-06-03 19:47:53,365 | INFO     | process IDs to be killed: [790248] (in reverse order)
[2025-06-03 15:48:11] 2025-06-03 19:47:53,435 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 15:48:11] 2025-06-03 19:47:53,435 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 15:48:11] 2025-06-03 19:47:53,443 | INFO     | did not find any defunct processes belonging to 790248
[2025-06-03 15:48:11] 2025-06-03 19:47:53,451 | INFO     | did not find any defunct processes belonging to 790248
[2025-06-03 15:48:11] 2025-06-03 19:47:53,451 | INFO     | ready for new job
[2025-06-03 15:48:11] 2025-06-03 19:47:53,451 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 15:48:11] 2025-06-03 19:47:53,453 | INFO     | **************************************
[2025-06-03 15:48:11] 2025-06-03 19:47:53,453 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 15:48:11] 2025-06-03 19:47:53,453 | INFO     | **************************************
[2025-06-03 15:48:11] 2025-06-03 19:47:53,453 | INFO     | 
[2025-06-03 15:48:11] 2025-06-03 19:47:53,468 | INFO     | architecture information:
[2025-06-03 15:48:11] 2025-06-03 19:47:53,468 | INFO     | executing command: cat /etc/os-release
[2025-06-03 15:48:11] 2025-06-03 19:47:53,481 | INFO     | cat /etc/os-release:
[2025-06-03 15:48:11] NAME="CentOS Linux"
[2025-06-03 15:48:11] VERSION="7 (Core)"
[2025-06-03 15:48:11] ID="centos"
[2025-06-03 15:48:11] ID_LIKE="rhel fedora"
[2025-06-03 15:48:11] VERSION_ID="7"
[2025-06-03 15:48:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 15:48:11] ANSI_COLOR="0;31"
[2025-06-03 15:48:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 15:48:11] HOME_URL="https://www.centos.org/"
[2025-06-03 15:48:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 15:48:11] 
[2025-06-03 15:48:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 15:48:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 15:48:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 15:48:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 15:48:11] 
[2025-06-03 15:48:11] 2025-06-03 19:47:53,482 | INFO     | **************************************
[2025-06-03 15:48:11] 2025-06-03 19:47:53,985 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 15:48:11] 2025-06-03 19:47:54,000 | INFO     | sufficient remaining disk space (53739520000 B)
[2025-06-03 15:48:11] 2025-06-03 19:47:54,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 15:48:11] 2025-06-03 19:47:54,001 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 15:48:11] 2025-06-03 19:47:54,001 | INFO     | update_server=False
[2025-06-03 15:48:11] 2025-06-03 19:47:54,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 15:48:11] 2025-06-03 19:47:54,001 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:48:11] 2025-06-03 19:47:54,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:48:11] 2025-06-03 19:47:54,002 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 15:48:11] 2025-06-03 19:47:54,002 | INFO     | will abort loop
[2025-06-03 15:48:11] 2025-06-03 19:47:54,002 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 15:48:11] 2025-06-03 19:47:54,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 15:48:11] 2025-06-03 19:47:54,003 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 15:48:11] 2025-06-03 19:47:54,011 | INFO     | all payload control threads have been joined
[2025-06-03 15:48:11] 2025-06-03 19:47:54,339 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 15:48:11] 2025-06-03 19:47:55,006 | INFO     | [job] retrieve thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:55,007 | INFO     | [job] queue monitor thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:55,008 | INFO     | [job] job monitor thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:55,016 | INFO     | [payload] control thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:55,025 | INFO     | [data] copytool_in thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:55,104 | INFO     | all data control threads have been joined
[2025-06-03 15:48:11] 2025-06-03 19:47:55,149 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:55,264 | INFO     | [job] validate thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:55,270 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:55,415 | INFO     | all job control threads have been joined
[2025-06-03 15:48:11] 2025-06-03 19:47:55,494 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 15:48:11] 2025-06-03 19:47:55,770 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:55,771 | INFO     | [payload] validate_post thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:56,051 | INFO     | [payload] failed_post thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:56,109 | INFO     | [data] control thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:56,420 | INFO     | [job] control thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:57,500 | INFO     | [data] copytool_out thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:47:58,346 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:48:04,696 | INFO     | job.realtimelogging is not enabled
[2025-06-03 15:48:11] 2025-06-03 19:48:05,700 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 15:48:11] 2025-06-03 19:48:06,496 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140092908046144)>', '<ExcThread(monitor, started 140092404381440)>']
[2025-06-03 15:48:11] 2025-06-03 19:48:07,069 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 15:48:11] 2025-06-03 19:48:07,070 | INFO     | [monitor] control thread has ended
[2025-06-03 15:48:11] 2025-06-03 19:48:11,518 | INFO     | all workflow threads have been joined
[2025-06-03 15:48:11] 2025-06-03 19:48:11,518 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 15:48:11] 2025-06-03 19:48:11,519 | INFO     | traces error code: 0
[2025-06-03 15:48:11] 2025-06-03 19:48:11,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 15:48:11] 2025-06-03 19:48:11,644 [wrapper] ==== pilot stdout END ====
[2025-06-03 15:48:11] 2025-06-03 19:48:11,646 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 15:48:11] 2025-06-03 19:48:11,655 [wrapper] pilotpid: 783665
[2025-06-03 15:48:11] 2025-06-03 19:48:11,658 [wrapper] Pilot exit status: 0
[2025-06-03 15:48:11] 2025-06-03 19:48:11,668 [wrapper] pandaids: 6667366023
[2025-06-03 15:48:11] 2025-06-03 19:48:11,715 [wrapper] cleanup supervisor_pilot 1125749 783666
[2025-06-03 15:48:11] 2025-06-03 19:48:11,718 [wrapper] Test setup, not cleaning
[2025-06-03 15:48:11] 2025-06-03 19:48:11,721 [wrapper] apfmon messages muted
[2025-06-03 15:48:11] 2025-06-03 19:48:11,723 [wrapper] ==== wrapper stdout END ====
[2025-06-03 15:48:11] 2025-06-03 19:48:11,726 [wrapper] ==== wrapper stderr END ====
[2025-06-03 15:48:11]  *** Error codes and diagnostics ***
[2025-06-03 15:48:11]     "exeErrorCode": 0,
[2025-06-03 15:48:11]     "exeErrorDiag": "",
[2025-06-03 15:48:11]     "pilotErrorCode": 0,
[2025-06-03 15:48:11]     "pilotErrorDiag": "",
[2025-06-03 15:48:11]  *** Listing of results directory ***
[2025-06-03 15:48:11] total 420904
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas    495897 May 27 13:43 pilot3.tar.gz
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas      5111 May 27 13:46 queuedata.json
[2025-06-03 15:48:11] -rwx------. 1 boincer umatlas     37140 May 27 13:47 runpilot2-wrapper.sh
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas       100 Jun  3 14:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 15:48:11] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 14:10 run_atlas
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas       105 Jun  3 14:10 job.xml
[2025-06-03 15:48:11] -rw-r--r--. 2 boincer umatlas 224667255 Jun  3 14:10 EVNT.44871834._002795.pool.root.1
[2025-06-03 15:48:11] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 14:10 start_atlas.sh
[2025-06-03 15:48:11] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 14:10 shared
[2025-06-03 15:48:11] -rw-r--r--. 2 boincer umatlas    508885 Jun  3 14:10 input.tar.gz
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas         0 Jun  3 14:10 boinc_lockfile
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas      2559 Jun  3 14:10 pandaJob.out
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas    985078 Jun  3 14:10 agis_schedconf.cvmfs.json
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas   1603667 Jun  3 14:10 agis_ddmendpoints.agis.ALL.json
[2025-06-03 15:48:11] drwx------. 4 boincer umatlas      4096 Jun  3 14:11 pilot3
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas      6840 Jun  3 15:45 init_data.xml
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas        95 Jun  3 15:46 pilot_heartbeat.json
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas       530 Jun  3 15:47 boinc_task_state.xml
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas 200758600 Jun  3 15:47 HITS.44871837._071147.pool.root.1
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas      1034 Jun  3 15:47 memory_monitor_summary.json
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas    308559 Jun  3 15:47 log.44871837._071147.job.log.tgz.1
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas      7712 Jun  3 15:47 heartbeat.json
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 15:48 boinc_mmap_file
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas        27 Jun  3 15:48 wrapper_checkpoint.txt
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas      4550 Jun  3 15:48 pilotlog.txt
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas    558715 Jun  3 15:48 log.44871837._071147.job.log.1
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas       357 Jun  3 15:48 output.list
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas       620 Jun  3 15:48 runtime_log
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas    890880 Jun  3 15:48 result.tar.gz
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas      8664 Jun  3 15:48 runtime_log.err
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas       652 Jun  3 15:48 0m2LDmYZDe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmU1ZKDmzUck8n.diag
[2025-06-03 15:48:11] -rw-r--r--. 1 boincer umatlas     21836 Jun  3 15:48 stderr.txt
[2025-06-03 15:48:11] HITS file was successfully produced:
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas 200758600 Jun  3 15:47 shared/HITS.pool.root.1
[2025-06-03 15:48:11]  *** Contents of shared directory: ***
[2025-06-03 15:48:11] total 416856
[2025-06-03 15:48:11] -rw-r--r--. 2 boincer umatlas 224667255 Jun  3 14:10 ATLAS.root_0
[2025-06-03 15:48:11] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 14:10 start_atlas.sh
[2025-06-03 15:48:11] -rw-r--r--. 2 boincer umatlas    508885 Jun  3 14:10 input.tar.gz
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas 200758600 Jun  3 15:47 HITS.pool.root.1
[2025-06-03 15:48:11] -rw-------. 1 boincer umatlas    890880 Jun  3 15:48 result.tar.gz
15:48:13 (774217): run_atlas exited; CPU time 40333.677284
15:48:13 (774217): called boinc_finish(0)

</stderr_txt>
]]>

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