Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:00:38 (10356): wrapper (7.7.26015): starting
03:00:38 (10356): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 03:00:38] Arguments: --nthreads 8
[2025-06-04 03:00:38] Threads: 8
[2025-06-04 03:00:38] Checking for CVMFS
[2025-06-04 03:00:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 03:00:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 03:00:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 03:00:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 03:00:40] 2.11.2.0 9777 32542 90556 146762 2 111 16340008 25165824 4278 130560 0 17464600 99.880 17535433 1952 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 03:00:40] CVMFS is ok
[2025-06-04 03:00:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 03:00:40] Checking for apptainer binary...
[2025-06-04 03:00:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 03:00:40] Running /usr/bin/apptainer --version
[2025-06-04 03:00:40] apptainer version 1.3.2-1.el7
[2025-06-04 03:00:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 03:00:52] cg-vwn477.simple-grid.lan
[2025-06-04 03:00:52] apptainer works
[2025-06-04 03:00:52] Set ATHENA_PROC_NUMBER=8
[2025-06-04 03:00:52] Set ATHENA_CORE_NUMBER=8
[2025-06-04 03:00:53] Starting ATLAS job with PandaID=6677676726
[2025-06-04 03:00:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:03:46]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:03:46] 2025-06-04 04:41:13,863 | INFO     | extracted standard info from prmon json
[2025-06-04 07:03:46] 2025-06-04 04:41:13,863 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:03:46] 2025-06-04 04:41:13,863 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:03:46] 2025-06-04 04:41:13,863 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:03:46] 2025-06-04 04:41:13,864 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:03:46] 2025-06-04 04:41:13,867 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:03:46] 2025-06-04 04:41:13,868 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 07:03:46] 2025-06-04 04:41:13,869 | INFO     | sum of deviations: 45172966717.99997
[2025-06-04 07:03:46] 2025-06-04 04:41:13,870 | INFO     | mean x: 1749005742.5
[2025-06-04 07:03:46] 2025-06-04 04:41:13,870 | INFO     | mean y: 2440174.401960784
[2025-06-04 07:03:46] 2025-06-04 04:41:13,870 | INFO     | -- intersect: -30010694614.926918
[2025-06-04 07:03:46] 2025-06-04 04:41:13,870 | INFO     | intersect: -30010694614.926918
[2025-06-04 07:03:46] 2025-06-04 04:41:13,870 | INFO     | chi2: 6.316846529765651
[2025-06-04 07:03:46] 2025-06-04 04:41:13,871 | INFO     | sum of square deviations: 2443580700.0
[2025-06-04 07:03:46] 2025-06-04 04:41:13,872 | INFO     | sum of deviations: 57404458517.0
[2025-06-04 07:03:46] 2025-06-04 04:41:13,872 | INFO     | mean x: 1749005590.0
[2025-06-04 07:03:46] 2025-06-04 04:41:13,872 | INFO     | mean y: 2449835.502512563
[2025-06-04 07:03:46] 2025-06-04 04:41:13,872 | INFO     | -- intersect: -41085089789.096794
[2025-06-04 07:03:46] 2025-06-04 04:41:13,873 | INFO     | intersect: -41085089789.096794
[2025-06-04 07:03:46] 2025-06-04 04:41:13,873 | INFO     | chi2: 5.611584319948954
[2025-06-04 07:03:46] 2025-06-04 04:41:13,873 | INFO     | current chi2=5.611584319948954 (change=11.164783036811587 %)
[2025-06-04 07:03:46] 2025-06-04 04:41:13,873 | INFO     | right removable region: 198
[2025-06-04 07:03:46] 2025-06-04 04:41:13,873 | INFO     | sum of square deviations: 2443580700.0
[2025-06-04 07:03:46] 2025-06-04 04:41:13,875 | INFO     | sum of deviations: -23311314700.0
[2025-06-04 07:03:46] 2025-06-04 04:41:13,875 | INFO     | mean x: 1749005895.0
[2025-06-04 07:03:46] 2025-06-04 04:41:13,875 | INFO     | mean y: 2495400.9396984926
[2025-06-04 07:03:46] 2025-06-04 04:41:13,875 | INFO     | -- intersect: 16687693000.71619
[2025-06-04 07:03:46] 2025-06-04 04:41:13,875 | INFO     | intersect: 16687693000.71619
[2025-06-04 07:03:46] 2025-06-04 04:41:13,875 | INFO     | chi2: 1.738175592123436
[2025-06-04 07:03:46] 2025-06-04 04:41:13,876 | INFO     | current chi2=1.738175592123436 (change=72.48349181932839 %)
[2025-06-04 07:03:46] 2025-06-04 04:41:13,876 | INFO     | sum of square deviations: 2263977332.5
[2025-06-04 07:03:46] 2025-06-04 04:41:13,877 | INFO     | sum of deviations: -46110909519.5
[2025-06-04 07:03:46] 2025-06-04 04:41:13,877 | INFO     | mean x: 1749006047.5
[2025-06-04 07:03:46] 2025-06-04 04:41:13,877 | INFO     | mean y: 2514562.5515463916
[2025-06-04 07:03:46] 2025-06-04 04:41:13,877 | INFO     | -- intersect: 35624894012.912415
[2025-06-04 07:03:46] 2025-06-04 04:41:13,878 | INFO     | intersect: 35624894012.912415
[2025-06-04 07:03:46] 2025-06-04 04:41:13,878 | INFO     | chi2: 0.9696747315989027
[2025-06-04 07:03:46] 2025-06-04 04:41:13,878 | INFO     | current chi2=0.9696747315989027 (change=44.21307398441242 %)
[2025-06-04 07:03:46] 2025-06-04 04:41:13,878 | INFO     | sum of square deviations: 2093397390.0
[2025-06-04 07:03:46] 2025-06-04 04:41:13,879 | INFO     | sum of deviations: -42275588718.0
[2025-06-04 07:03:46] 2025-06-04 04:41:13,880 | INFO     | mean x: 1749006200.0
[2025-06-04 07:03:46] 2025-06-04 04:41:13,880 | INFO     | mean y: 2511099.2275132276
[2025-06-04 07:03:46] 2025-06-04 04:41:13,880 | INFO     | -- intersect: 35323213766.40341
[2025-06-04 07:03:46] 2025-06-04 04:41:13,880 | INFO     | intersect: 35323213766.40341
[2025-06-04 07:03:46] 2025-06-04 04:41:13,880 | INFO     | chi2: 0.9597303226766225
[2025-06-04 07:03:46] 2025-06-04 04:41:13,880 | INFO     | current chi2=0.9597303226766225 (change=1.0255406888743832 %)
[2025-06-04 07:03:46] 2025-06-04 04:41:13,880 | INFO     | left removable region: 30
[2025-06-04 07:03:46] 2025-06-04 04:41:13,881 | INFO     | sum of square deviations: 1470248962.0
[2025-06-04 07:03:46] 2025-06-04 04:41:13,882 | INFO     | sum of deviations: -9654756883.000004
[2025-06-04 07:03:46] 2025-06-04 04:41:13,882 | INFO     | mean x: 1749006474.5
[2025-06-04 07:03:46] 2025-06-04 04:41:13,882 | INFO     | mean y: 2503235.0476190476
[2025-06-04 07:03:46] 2025-06-04 04:41:13,882 | INFO     | -- intersect: 11487790920.69228
[2025-06-04 07:03:46] 2025-06-04 04:41:13,882 | INFO     | intersect: 11487790920.69228
[2025-06-04 07:03:46] 2025-06-04 04:41:13,882 | INFO     | chi2: 0.09731424793823358
[2025-06-04 07:03:46] 2025-06-04 04:41:13,883 | INFO     | -- intersect: 11487790920.69228
[2025-06-04 07:03:46] 2025-06-04 04:41:13,883 | INFO     | current memory leak: -6.57 B/s (using 168 data points, chi2=0.10)
[2025-06-04 07:03:46] 2025-06-04 04:41:13,884 | INFO     | ..............................
[2025-06-04 07:03:46] 2025-06-04 04:41:13,884 | INFO     | . Timing measurements:
[2025-06-04 07:03:46] 2025-06-04 04:41:13,884 | INFO     | . get job = 0 s
[2025-06-04 07:03:46] 2025-06-04 04:41:13,884 | INFO     | . initial setup = 9 s
[2025-06-04 07:03:46] 2025-06-04 04:41:13,884 | INFO     | . payload setup = 165 s
[2025-06-04 07:03:46] 2025-06-04 04:41:13,884 | INFO     | . stage-in = 0 s
[2025-06-04 07:03:46] 2025-06-04 04:41:13,884 | INFO     | . payload execution = 12573 s
[2025-06-04 07:03:46] 2025-06-04 04:41:13,884 | INFO     | . stage-out = 14 s
[2025-06-04 07:03:46] 2025-06-04 04:41:13,884 | INFO     | . log creation = 1 s
[2025-06-04 07:03:46] 2025-06-04 04:41:13,884 | INFO     | ..............................
[2025-06-04 07:03:46] 2025-06-04 04:41:14,017 | INFO     | 
[2025-06-04 07:03:46] 2025-06-04 04:41:14,017 | INFO     | job summary report
[2025-06-04 07:03:46] 2025-06-04 04:41:14,017 | INFO     | --------------------------------------------------
[2025-06-04 07:03:46] 2025-06-04 04:41:14,017 | INFO     | PanDA job id: 6677676726
[2025-06-04 07:03:46] 2025-06-04 04:41:14,017 | INFO     | task id: 45006595
[2025-06-04 07:03:46] 2025-06-04 04:41:14,017 | INFO     | errors: (none)
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | pilot state: finished 
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | transexitcode: 0
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | exeerrorcode: 0
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | exeerrordiag: 
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | exitcode: 0
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | exitmsg: OK
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | cpuconsumptiontime: 45250 s
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | nevents: 400
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | neventsw: 0
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | pid: 28378
[2025-06-04 07:03:46] 2025-06-04 04:41:14,018 | INFO     | pgrp: 28378
[2025-06-04 07:03:46] 2025-06-04 04:41:14,019 | INFO     | corecount: 8
[2025-06-04 07:03:46] 2025-06-04 04:41:14,019 | INFO     | event service: False
[2025-06-04 07:03:46] 2025-06-04 04:41:14,019 | INFO     | sizes: {0: 2404356, 1: 2405041, 2: 2405240, 13: 2405240, 23: 2405296, 34: 2405324, 45: 2405480, 56: 2405508, 66: 2405536, 77: 2405564, 88: 2405620, 97: 2406134, 99
[2025-06-04 07:03:46] 2025-06-04 04:41:14,019 | INFO     | --------------------------------------------------
[2025-06-04 07:03:46] 2025-06-04 04:41:14,019 | INFO     | 
[2025-06-04 07:03:46] 2025-06-04 04:41:14,019 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-04 07:03:46] 2025-06-04 04:41:14,523 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,523 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,523 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,524 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,525 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,525 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:03:46] 2025-06-04 04:41:14,525 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,525 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:03:46] 2025-06-04 04:41:14,525 | INFO     | job 6677676726 has completed (purged errors)
[2025-06-04 07:03:46] 2025-06-04 04:41:14,525 | INFO     | overall cleanup function is called
[2025-06-04 07:03:46] 2025-06-04 04:41:15,534 | INFO     | --- collectZombieJob: --- 10, [28378]
[2025-06-04 07:03:46] 2025-06-04 04:41:15,534 | INFO     | zombie collector waiting for pid 28378
[2025-06-04 07:03:46] 2025-06-04 04:41:15,535 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:03:46] 2025-06-04 04:41:15,535 | INFO     | collected zombie processes
[2025-06-04 07:03:46] 2025-06-04 04:41:15,535 | INFO     | will attempt to kill all subprocesses of pid=28378
[2025-06-04 07:03:46] 2025-06-04 04:41:15,674 | INFO     | process IDs to be killed: [28378] (in reverse order)
[2025-06-04 07:03:46] 2025-06-04 04:41:16,369 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:03:46] 2025-06-04 04:41:16,369 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:03:46] 2025-06-04 04:41:16,373 | INFO     | did not find any defunct processes belonging to 28378
[2025-06-04 07:03:46] 2025-06-04 04:41:16,376 | INFO     | did not find any defunct processes belonging to 28378
[2025-06-04 07:03:46] 2025-06-04 04:41:16,376 | INFO     | ready for new job
[2025-06-04 07:03:46] 2025-06-04 04:41:16,376 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:03:46] 2025-06-04 04:41:16,378 | INFO     | **************************************
[2025-06-04 07:03:46] 2025-06-04 04:41:16,378 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:03:46] 2025-06-04 04:41:16,378 | INFO     | **************************************
[2025-06-04 07:03:46] 2025-06-04 04:41:16,379 | INFO     | 
[2025-06-04 07:03:46] 2025-06-04 04:41:16,379 | INFO     | pilot is running in a VM
[2025-06-04 07:03:46] 2025-06-04 04:41:16,379 | INFO     | architecture information:
[2025-06-04 07:03:46] 2025-06-04 04:41:16,389 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:03:46] 2025-06-04 04:41:16,580 | INFO     | cat /etc/os-release:
[2025-06-04 07:03:46] NAME="CentOS Linux"
[2025-06-04 07:03:46] VERSION="7 (Core)"
[2025-06-04 07:03:46] ID="centos"
[2025-06-04 07:03:46] ID_LIKE="rhel fedora"
[2025-06-04 07:03:46] VERSION_ID="7"
[2025-06-04 07:03:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:03:46] ANSI_COLOR="0;31"
[2025-06-04 07:03:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:03:46] HOME_URL="https://www.centos.org/"
[2025-06-04 07:03:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:03:46] 
[2025-06-04 07:03:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:03:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:03:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:03:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:03:46] 
[2025-06-04 07:03:46] 2025-06-04 04:41:16,581 | INFO     | **************************************
[2025-06-04 07:03:46] 2025-06-04 04:41:17,084 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-04 07:03:46] 2025-06-04 04:41:17,191 | INFO     | sufficient remaining disk space (496820551680 B)
[2025-06-04 07:03:46] 2025-06-04 04:41:17,191 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:03:46] 2025-06-04 04:41:17,192 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:03:46] 2025-06-04 04:41:17,192 | INFO     | update_server=False
[2025-06-04 07:03:46] 2025-06-04 04:41:17,192 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:03:46] 2025-06-04 04:41:17,193 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 07:03:46] 2025-06-04 04:41:17,194 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:03:46] 2025-06-04 04:41:17,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:03:46] 2025-06-04 04:41:17,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:03:46] 2025-06-04 04:41:17,196 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:03:46] 2025-06-04 04:41:18,133 | INFO     | all data control threads have been joined
[2025-06-04 07:03:46] 2025-06-04 04:41:18,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:03:46] 2025-06-04 04:41:18,148 | INFO     | aborting loop
[2025-06-04 07:03:46] 2025-06-04 04:41:18,198 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:18,235 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:18,244 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:18,305 | INFO     | all job control threads have been joined
[2025-06-04 07:03:46] 2025-06-04 04:41:18,476 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:18,538 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:18,588 | INFO     | all payload control threads have been joined
[2025-06-04 07:03:46] 2025-06-04 04:41:18,834 | INFO     | [job] validate thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:18,910 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:19,032 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:03:46] 2025-06-04 04:41:19,044 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:03:46] 2025-06-04 04:41:19,139 | INFO     | [data] control thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:19,153 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:19,203 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:19,311 | INFO     | [job] control thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:19,355 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:19,594 | INFO     | [payload] control thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:19,598 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:20,038 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:23,053 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:03:46] 2025-06-04 04:41:23,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139951636764480)>', '<ExcThread(monitor, started 139950905358080)>']
[2025-06-04 07:03:46] 2025-06-04 04:41:24,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:03:46] 2025-06-04 04:41:24,236 | INFO     | [monitor] control thread has ended
[2025-06-04 07:03:46] 2025-06-04 04:41:28,434 | INFO     | all workflow threads have been joined
[2025-06-04 07:03:46] 2025-06-04 04:41:28,435 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:03:46] 2025-06-04 04:41:28,435 | INFO     | traces error code: 0
[2025-06-04 07:03:46] 2025-06-04 04:41:28,435 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:03:46] 2025-06-04 04:41:28,802 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:03:46] 2025-06-04 04:41:28,835 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:03:46] 2025-06-04 04:41:28,863 [wrapper] pilotpid: 19775
[2025-06-04 07:03:46] 2025-06-04 04:41:28,951 [wrapper] Pilot exit status: 0
[2025-06-04 07:03:46] 2025-06-04 04:41:29,360 [wrapper] pandaids: 6677676726
[2025-06-04 07:03:46] 2025-06-04 04:41:30,267 [wrapper] cleanup supervisor_pilot 13025 19776
[2025-06-04 07:03:46] 2025-06-04 04:41:30,363 [wrapper] Test setup, not cleaning
[2025-06-04 07:03:46] 2025-06-04 04:41:30,466 [wrapper] apfmon messages muted
[2025-06-04 07:03:46] 2025-06-04 04:41:30,559 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:03:46] 2025-06-04 04:41:30,675 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:03:46]  *** Error codes and diagnostics ***
[2025-06-04 07:03:46]     "exeErrorCode": 0,
[2025-06-04 07:03:46]     "exeErrorDiag": "",
[2025-06-04 07:03:46]     "pilotErrorCode": 0,
[2025-06-04 07:03:46]     "pilotErrorDiag": "",
[2025-06-04 07:03:46]  *** Listing of results directory ***
[2025-06-04 07:03:46] total 385820
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc    495897 Jun  3 17:19 pilot3.tar.gz
[2025-06-04 07:03:46] -rwx------. 1 boinc boinc     37140 Jun  3 17:25 runpilot2-wrapper.sh
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc      5111 Jun  3 17:25 queuedata.json
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc       100 Jun  4 03:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:03:46] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 03:00 run_atlas
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc       105 Jun  4 03:00 job.xml
[2025-06-04 07:03:46] -rw-r--r--. 2 boinc boinc 213590278 Jun  4 03:00 EVNT.45006593._001479.pool.root.1
[2025-06-04 07:03:46] drwxrwx--x. 2 boinc boinc        68 Jun  4 03:00 shared
[2025-06-04 07:03:46] -rw-r--r--. 2 boinc boinc    508874 Jun  4 03:00 input.tar.gz
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc      6392 Jun  4 03:00 init_data.xml
[2025-06-04 07:03:46] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:00 start_atlas.sh
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc         0 Jun  4 03:00 boinc_lockfile
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc      2525 Jun  4 03:00 pandaJob.out
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc    986069 Jun  4 03:03 agis_schedconf.cvmfs.json
[2025-06-04 07:03:46] drwx------. 4 boinc boinc      4096 Jun  4 03:03 pilot3
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc 174672554 Jun  4 06:38 HITS.45006595._036816.pool.root.1
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc       531 Jun  4 06:38 boinc_task_state.xml
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc      1019 Jun  4 06:39 memory_monitor_summary.json
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc   1603667 Jun  4 06:39 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc    379141 Jun  4 06:39 log.45006595._036816.job.log.tgz.1
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc        95 Jun  4 06:40 pilot_heartbeat.json
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc      7695 Jun  4 06:41 heartbeat.json
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc      4539 Jun  4 06:41 pilotlog.txt
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc   1119662 Jun  4 06:41 log.45006595._036816.job.log.1
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc       357 Jun  4 06:41 output.list
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc       620 Jun  4 06:41 runtime_log
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc   1515520 Jun  4 06:41 result.tar.gz
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc      8659 Jun  4 06:41 runtime_log.err
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc       656 Jun  4 06:41 2aMODmQhig7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOnkKDmT2JDgn.diag
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc      8192 Jun  4 07:03 boinc_mmap_file
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc        28 Jun  4 07:03 wrapper_checkpoint.txt
[2025-06-04 07:03:46] -rw-r--r--. 1 boinc boinc     20504 Jun  4 07:03 stderr.txt
[2025-06-04 07:03:46] HITS file was successfully produced:
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc 174672554 Jun  4 06:38 shared/HITS.pool.root.1
[2025-06-04 07:03:46]  *** Contents of shared directory: ***
[2025-06-04 07:03:46] total 381164
[2025-06-04 07:03:46] -rw-r--r--. 2 boinc boinc 213590278 Jun  4 03:00 ATLAS.root_0
[2025-06-04 07:03:46] -rw-r--r--. 2 boinc boinc    508874 Jun  4 03:00 input.tar.gz
[2025-06-04 07:03:46] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:00 start_atlas.sh
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc 174672554 Jun  4 06:38 HITS.pool.root.1
[2025-06-04 07:03:46] -rw-------. 1 boinc boinc   1515520 Jun  4 06:41 result.tar.gz
07:03:48 (10356): run_atlas exited; CPU time 45408.932875
07:03:48 (10356): called boinc_finish(0)

</stderr_txt>
]]>

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