Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:51:44 (1744714): wrapper (7.7.26015): starting
13:51:44 (1744714): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 13:51:44] Arguments: --nthreads 8
[2025-06-03 13:51:44] Threads: 8
[2025-06-03 13:51:44] Checking for CVMFS
[2025-06-03 13:51:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 13:51:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 13:51:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 13:51:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 13:51:44] 2.12.6.0 706982 37885 272480 146750 3 187 23673039 25181185 4539 16776704 3 189686574 99.558 220095403 24640 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 13:51:44] CVMFS is ok
[2025-06-03 13:51:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 13:51:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 13:51:44] Further information can be found at the LHC@home message board.
[2025-06-03 13:51:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 13:51:44] Checking for apptainer binary...
[2025-06-03 13:51:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 13:51:44] Running /usr/bin/apptainer --version
[2025-06-03 13:51:45] apptainer version 1.4.1-1.el9
[2025-06-03 13:51:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 13:51:45] c-16-34.aglt2.org
[2025-06-03 13:51:45] apptainer works
[2025-06-03 13:51:45] Set ATHENA_PROC_NUMBER=8
[2025-06-03 13:51:45] Set ATHENA_CORE_NUMBER=8
[2025-06-03 13:51:45] Starting ATLAS job with PandaID=6677676811
[2025-06-03 13:51:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 19:48:26]  *** The last 200 lines of the pilot log: ***
[2025-06-03 19:48:26] 2025-06-03 23:48:10,362 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 19:48:26] 2025-06-03 23:48:10,362 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6677676811/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 19:48:26] 2025-06-03 23:48:10,369 | INFO     | extracted standard info from prmon json
[2025-06-03 19:48:26] 2025-06-03 23:48:10,370 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 19:48:26] 2025-06-03 23:48:10,370 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 19:48:26] 2025-06-03 23:48:10,370 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 19:48:26] 2025-06-03 23:48:10,370 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 19:48:26] 2025-06-03 23:48:10,422 | INFO     | fitting pss+swap vs Time
[2025-06-03 19:48:26] 2025-06-03 23:48:10,423 | INFO     | sum of square deviations: 13294377032.868505
[2025-06-03 19:48:26] 2025-06-03 23:48:10,449 | INFO     | sum of deviations: 75116052960.23999
[2025-06-03 19:48:26] 2025-06-03 23:48:10,449 | INFO     | mean x: 1748983784.7542858
[2025-06-03 19:48:26] 2025-06-03 23:48:10,449 | INFO     | mean y: 2052186.84
[2025-06-03 19:48:26] 2025-06-03 23:48:10,449 | INFO     | -- intersect: -9880077549.468296
[2025-06-03 19:48:26] 2025-06-03 23:48:10,450 | INFO     | intersect: -9880077549.468296
[2025-06-03 19:48:26] 2025-06-03 23:48:10,452 | INFO     | chi2: 3.9184069040169045
[2025-06-03 19:48:26] 2025-06-03 23:48:10,453 | INFO     | sum of square deviations: 12732728530.040585
[2025-06-03 19:48:26] 2025-06-03 23:48:10,480 | INFO     | sum of deviations: 70301631433.58263
[2025-06-03 19:48:26] 2025-06-03 23:48:10,481 | INFO     | mean x: 1748983632.257971
[2025-06-03 19:48:26] 2025-06-03 23:48:10,481 | INFO     | mean y: 2050888.0608695652
[2025-06-03 19:48:26] 2025-06-03 23:48:10,481 | INFO     | -- intersect: -9654669775.406898
[2025-06-03 19:48:26] 2025-06-03 23:48:10,481 | INFO     | intersect: -9654669775.406898
[2025-06-03 19:48:26] 2025-06-03 23:48:10,482 | INFO     | chi2: 3.8955298184441145
[2025-06-03 19:48:26] 2025-06-03 23:48:10,482 | INFO     | current chi2=3.8955298184441145 (change=0.5838363940543758 %)
[2025-06-03 19:48:26] 2025-06-03 23:48:10,482 | INFO     | right removable region: 344
[2025-06-03 19:48:26] 2025-06-03 23:48:10,483 | INFO     | sum of square deviations: 12732674240.040577
[2025-06-03 19:48:26] 2025-06-03 23:48:10,488 | INFO     | sum of deviations: 2731807117.2318726
[2025-06-03 19:48:26] 2025-06-03 23:48:10,488 | INFO     | mean x: 1748983937.257971
[2025-06-03 19:48:26] 2025-06-03 23:48:10,488 | INFO     | mean y: 2071804.1884057971
[2025-06-03 19:48:26] 2025-06-03 23:48:10,489 | INFO     | -- intersect: -373174328.52898335
[2025-06-03 19:48:26] 2025-06-03 23:48:10,489 | INFO     | intersect: -373174328.52898335
[2025-06-03 19:48:26] 2025-06-03 23:48:10,489 | INFO     | chi2: 1.4420899009698112
[2025-06-03 19:48:26] 2025-06-03 23:48:10,490 | INFO     | current chi2=1.4420899009698112 (change=63.19703552248564 %)
[2025-06-03 19:48:26] 2025-06-03 23:48:10,491 | INFO     | sum of square deviations: 12187018259.703005
[2025-06-03 19:48:26] 2025-06-03 23:48:10,494 | INFO     | sum of deviations: -40154227030.87647
[2025-06-03 19:48:26] 2025-06-03 23:48:10,494 | INFO     | mean x: 1748984089.7617648
[2025-06-03 19:48:26] 2025-06-03 23:48:10,494 | INFO     | mean y: 2083759.594117647
[2025-06-03 19:48:26] 2025-06-03 23:48:10,494 | INFO     | -- intersect: 5764699578.912354
[2025-06-03 19:48:26] 2025-06-03 23:48:10,494 | INFO     | intersect: 5764699578.912354
[2025-06-03 19:48:26] 2025-06-03 23:48:10,495 | INFO     | chi2: 0.5086009954275909
[2025-06-03 19:48:26] 2025-06-03 23:48:10,495 | INFO     | current chi2=0.5086009954275909 (change=64.73167206250078 %)
[2025-06-03 19:48:26] 2025-06-03 23:48:10,496 | INFO     | sum of square deviations: 11657176529.355215
[2025-06-03 19:48:26] 2025-06-03 23:48:10,499 | INFO     | sum of deviations: -34751745597.88654
[2025-06-03 19:48:26] 2025-06-03 23:48:10,499 | INFO     | mean x: 1748984242.2656717
[2025-06-03 19:48:26] 2025-06-03 23:48:10,499 | INFO     | mean y: 2082200.7402985075
[2025-06-03 19:48:26] 2025-06-03 23:48:10,499 | INFO     | -- intersect: 5216059641.063996
[2025-06-03 19:48:26] 2025-06-03 23:48:10,499 | INFO     | intersect: 5216059641.063996
[2025-06-03 19:48:26] 2025-06-03 23:48:10,500 | INFO     | chi2: 0.5014425000437351
[2025-06-03 19:48:26] 2025-06-03 23:48:10,500 | INFO     | current chi2=0.5014425000437351 (change=1.407487489842096 %)
[2025-06-03 19:48:26] 2025-06-03 23:48:10,500 | INFO     | left removable region: 30
[2025-06-03 19:48:26] 2025-06-03 23:48:10,501 | INFO     | sum of square deviations: 9599349549.273907
[2025-06-03 19:48:26] 2025-06-03 23:48:10,503 | INFO     | sum of deviations: -24393500076.273895
[2025-06-03 19:48:26] 2025-06-03 23:48:10,504 | INFO     | mean x: 1748984516.7834394
[2025-06-03 19:48:26] 2025-06-03 23:48:10,504 | INFO     | mean y: 2076871.7165605095
[2025-06-03 19:48:26] 2025-06-03 23:48:10,504 | INFO     | -- intersect: 4446529459.317746
[2025-06-03 19:48:26] 2025-06-03 23:48:10,504 | INFO     | intersect: 4446529459.317746
[2025-06-03 19:48:26] 2025-06-03 23:48:10,504 | INFO     | chi2: 0.45695679803876377
[2025-06-03 19:48:26] 2025-06-03 23:48:10,505 | INFO     | -- intersect: 4446529459.317746
[2025-06-03 19:48:26] 2025-06-03 23:48:10,505 | INFO     | current memory leak: -2.54 B/s (using 314 data points, chi2=0.46)
[2025-06-03 19:48:26] 2025-06-03 23:48:10,506 | INFO     | ..............................
[2025-06-03 19:48:26] 2025-06-03 23:48:10,506 | INFO     | . Timing measurements:
[2025-06-03 19:48:26] 2025-06-03 23:48:10,506 | INFO     | . get job = 0 s
[2025-06-03 19:48:26] 2025-06-03 23:48:10,506 | INFO     | . initial setup = 2 s
[2025-06-03 19:48:26] 2025-06-03 23:48:10,506 | INFO     | . payload setup = 6 s
[2025-06-03 19:48:26] 2025-06-03 23:48:10,506 | INFO     | . stage-in = 0 s
[2025-06-03 19:48:26] 2025-06-03 23:48:10,506 | INFO     | . payload execution = 21330 s
[2025-06-03 19:48:26] 2025-06-03 23:48:10,506 | INFO     | . stage-out = 3 s
[2025-06-03 19:48:26] 2025-06-03 23:48:10,507 | INFO     | . log creation = 0 s
[2025-06-03 19:48:26] 2025-06-03 23:48:10,507 | INFO     | ..............................
[2025-06-03 19:48:26] 2025-06-03 23:48:11,162 | INFO     | 
[2025-06-03 19:48:26] 2025-06-03 23:48:11,162 | INFO     | job summary report
[2025-06-03 19:48:26] 2025-06-03 23:48:11,162 | INFO     | --------------------------------------------------
[2025-06-03 19:48:26] 2025-06-03 23:48:11,162 | INFO     | PanDA job id: 6677676811
[2025-06-03 19:48:26] 2025-06-03 23:48:11,162 | INFO     | task id: 45006595
[2025-06-03 19:48:26] 2025-06-03 23:48:11,162 | INFO     | errors: (none)
[2025-06-03 19:48:26] 2025-06-03 23:48:11,163 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 19:48:26] 2025-06-03 23:48:11,163 | INFO     | pilot state: finished 
[2025-06-03 19:48:26] 2025-06-03 23:48:11,163 | INFO     | transexitcode: 0
[2025-06-03 19:48:26] 2025-06-03 23:48:11,163 | INFO     | exeerrorcode: 0
[2025-06-03 19:48:26] 2025-06-03 23:48:11,163 | INFO     | exeerrordiag: 
[2025-06-03 19:48:26] 2025-06-03 23:48:11,163 | INFO     | exitcode: 0
[2025-06-03 19:48:26] 2025-06-03 23:48:11,164 | INFO     | exitmsg: OK
[2025-06-03 19:48:26] 2025-06-03 23:48:11,164 | INFO     | cpuconsumptiontime: 45815 s
[2025-06-03 19:48:26] 2025-06-03 23:48:11,164 | INFO     | nevents: 400
[2025-06-03 19:48:26] 2025-06-03 23:48:11,164 | INFO     | neventsw: 0
[2025-06-03 19:48:26] 2025-06-03 23:48:11,164 | INFO     | pid: 1755306
[2025-06-03 19:48:26] 2025-06-03 23:48:11,164 | INFO     | pgrp: 1755306
[2025-06-03 19:48:26] 2025-06-03 23:48:11,164 | INFO     | corecount: 8
[2025-06-03 19:48:26] 2025-06-03 23:48:11,165 | INFO     | event service: False
[2025-06-03 19:48:26] 2025-06-03 23:48:11,165 | INFO     | sizes: {0: 2405013, 1: 2405212, 5: 2405418, 11: 2405474, 21340: 2438736, 21345: 2447677, 21347: 2447861, 21361: 2448031}
[2025-06-03 19:48:26] 2025-06-03 23:48:11,165 | INFO     | --------------------------------------------------
[2025-06-03 19:48:26] 2025-06-03 23:48:11,165 | INFO     | 
[2025-06-03 19:48:26] 2025-06-03 23:48:11,165 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-03 19:48:26] 2025-06-03 23:48:11,189 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,189 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,189 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,190 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,190 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,190 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,190 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,190 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,190 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,190 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,191 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,191 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,191 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,191 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,191 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,191 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,191 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,192 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 19:48:26] 2025-06-03 23:48:11,192 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,192 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 19:48:26] 2025-06-03 23:48:11,192 | INFO     | job 6677676811 has completed (purged errors)
[2025-06-03 19:48:26] 2025-06-03 23:48:11,192 | INFO     | overall cleanup function is called
[2025-06-03 19:48:26] 2025-06-03 23:48:12,240 | INFO     | --- collectZombieJob: --- 10, [1755306]
[2025-06-03 19:48:26] 2025-06-03 23:48:12,245 | INFO     | zombie collector waiting for pid 1755306
[2025-06-03 19:48:26] 2025-06-03 23:48:12,245 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 19:48:26] 2025-06-03 23:48:12,245 | INFO     | collected zombie processes
[2025-06-03 19:48:26] 2025-06-03 23:48:12,245 | INFO     | will attempt to kill all subprocesses of pid=1755306
[2025-06-03 19:48:26] 2025-06-03 23:48:12,934 | INFO     | process IDs to be killed: [1755306] (in reverse order)
[2025-06-03 19:48:26] 2025-06-03 23:48:13,073 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 19:48:26] 2025-06-03 23:48:13,074 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 19:48:26] 2025-06-03 23:48:13,098 | INFO     | did not find any defunct processes belonging to 1755306
[2025-06-03 19:48:26] 2025-06-03 23:48:13,115 | INFO     | did not find any defunct processes belonging to 1755306
[2025-06-03 19:48:26] 2025-06-03 23:48:13,116 | INFO     | ready for new job
[2025-06-03 19:48:26] 2025-06-03 23:48:13,116 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 19:48:26] 2025-06-03 23:48:13,118 | INFO     | **************************************
[2025-06-03 19:48:26] 2025-06-03 23:48:13,119 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 19:48:26] 2025-06-03 23:48:13,119 | INFO     | **************************************
[2025-06-03 19:48:26] 2025-06-03 23:48:13,119 | INFO     | 
[2025-06-03 19:48:26] 2025-06-03 23:48:13,122 | INFO     | architecture information:
[2025-06-03 19:48:26] 2025-06-03 23:48:13,122 | INFO     | executing command: cat /etc/os-release
[2025-06-03 19:48:26] 2025-06-03 23:48:13,150 | INFO     | cat /etc/os-release:
[2025-06-03 19:48:26] NAME="CentOS Linux"
[2025-06-03 19:48:26] VERSION="7 (Core)"
[2025-06-03 19:48:26] ID="centos"
[2025-06-03 19:48:26] ID_LIKE="rhel fedora"
[2025-06-03 19:48:26] VERSION_ID="7"
[2025-06-03 19:48:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 19:48:26] ANSI_COLOR="0;31"
[2025-06-03 19:48:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 19:48:26] HOME_URL="https://www.centos.org/"
[2025-06-03 19:48:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 19:48:26] 
[2025-06-03 19:48:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 19:48:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 19:48:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 19:48:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 19:48:26] 
[2025-06-03 19:48:26] 2025-06-03 23:48:13,151 | INFO     | **************************************
[2025-06-03 19:48:26] 2025-06-03 23:48:13,655 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-03 19:48:26] 2025-06-03 23:48:13,824 | INFO     | sufficient remaining disk space (61534633984 B)
[2025-06-03 19:48:26] 2025-06-03 23:48:13,824 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 19:48:26] 2025-06-03 23:48:13,824 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 19:48:26] 2025-06-03 23:48:13,824 | INFO     | update_server=False
[2025-06-03 19:48:26] 2025-06-03 23:48:13,824 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 19:48:26] 2025-06-03 23:48:13,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 19:48:26] 2025-06-03 23:48:14,285 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 19:48:26] 2025-06-03 23:48:14,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 19:48:26] 2025-06-03 23:48:14,286 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 19:48:26] 2025-06-03 23:48:14,296 | INFO     | all data control threads have been joined
[2025-06-03 19:48:26] 2025-06-03 23:48:14,786 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 19:48:26] 2025-06-03 23:48:14,786 | INFO     | aborting loop
[2025-06-03 19:48:26] 2025-06-03 23:48:14,854 | INFO     | [job] retrieve thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:14,964 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:14,970 | INFO     | [job] validate thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:15,148 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:15,219 | INFO     | all payload control threads have been joined
[2025-06-03 19:48:26] 2025-06-03 23:48:15,220 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:15,228 | INFO     | all job control threads have been joined
[2025-06-03 19:48:26] 2025-06-03 23:48:15,306 | INFO     | [data] control thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:15,731 | INFO     | [payload] validate_post thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:15,792 | INFO     | [job] job monitor thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:15,836 | INFO     | [data] copytool_out thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:15,851 | INFO     | [payload] failed_post thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:15,898 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 19:48:26] 2025-06-03 23:48:15,901 | INFO     | [data] copytool_in thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:16,243 | INFO     | [payload] control thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:16,270 | INFO     | [job] control thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:16,270 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:16,897 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 19:48:26] 2025-06-03 23:48:16,903 | INFO     | [job] queue monitor thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:20,910 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 19:48:26] 2025-06-03 23:48:20,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140196962178880)>', '<ExcThread(monitor, started 140196246972160)>']
[2025-06-03 19:48:26] 2025-06-03 23:48:21,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 19:48:26] 2025-06-03 23:48:21,361 | INFO     | [monitor] control thread has ended
[2025-06-03 19:48:26] 2025-06-03 23:48:26,020 | INFO     | all workflow threads have been joined
[2025-06-03 19:48:26] 2025-06-03 23:48:26,020 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 19:48:26] 2025-06-03 23:48:26,021 | INFO     | traces error code: 0
[2025-06-03 19:48:26] 2025-06-03 23:48:26,021 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 19:48:26] 2025-06-03 23:48:26,317 [wrapper] ==== pilot stdout END ====
[2025-06-03 19:48:26] 2025-06-03 23:48:26,320 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 19:48:26] 2025-06-03 23:48:26,323 [wrapper] pilotpid: 1748390
[2025-06-03 19:48:26] 2025-06-03 23:48:26,329 [wrapper] Pilot exit status: 0
[2025-06-03 19:48:26] 2025-06-03 23:48:26,346 [wrapper] pandaids: 6677676811
[2025-06-03 19:48:26] 2025-06-03 23:48:26,477 [wrapper] cleanup supervisor_pilot  833735 1748391
[2025-06-03 19:48:26] 2025-06-03 23:48:26,487 [wrapper] Test setup, not cleaning
[2025-06-03 19:48:26] 2025-06-03 23:48:26,500 [wrapper] apfmon messages muted
[2025-06-03 19:48:26] 2025-06-03 23:48:26,519 [wrapper] ==== wrapper stdout END ====
[2025-06-03 19:48:26] 2025-06-03 23:48:26,528 [wrapper] ==== wrapper stderr END ====
[2025-06-03 19:48:26]  *** Error codes and diagnostics ***
[2025-06-03 19:48:26]     "exeErrorCode": 0,
[2025-06-03 19:48:26]     "exeErrorDiag": "",
[2025-06-03 19:48:26]     "pilotErrorCode": 0,
[2025-06-03 19:48:26]     "pilotErrorDiag": "",
[2025-06-03 19:48:26]  *** Listing of results directory ***
[2025-06-03 19:48:26] total 393948
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 11:19 pilot3.tar.gz
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 11:31 queuedata.json
[2025-06-03 19:48:26] -rwx------. 1 boincer umatlas     37140 Jun  3 11:31 runpilot2-wrapper.sh
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas       100 Jun  3 13:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 19:48:26] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 13:51 run_atlas
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas       105 Jun  3 13:51 job.xml
[2025-06-03 19:48:26] -rw-r--r--. 2 boincer umatlas 214003696 Jun  3 13:51 EVNT.45006593._001482.pool.root.1
[2025-06-03 19:48:26] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 13:51 shared
[2025-06-03 19:48:26] -rw-r--r--. 2 boincer umatlas    508880 Jun  3 13:51 input.tar.gz
[2025-06-03 19:48:26] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 13:51 start_atlas.sh
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas         0 Jun  3 13:51 boinc_lockfile
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 13:51 pandaJob.out
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas    985078 Jun  3 13:51 agis_schedconf.cvmfs.json
[2025-06-03 19:48:26] drwx------. 4 boincer umatlas      4096 Jun  3 13:51 pilot3
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas 181492051 Jun  3 19:47 HITS.45006595._036901.pool.root.1
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas       531 Jun  3 19:47 boinc_task_state.xml
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas      6613 Jun  3 19:47 init_data.xml
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas        95 Jun  3 19:47 pilot_heartbeat.json
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas      1053 Jun  3 19:47 memory_monitor_summary.json
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas   1603667 Jun  3 19:47 agis_ddmendpoints.agis.ALL.json
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas    457657 Jun  3 19:47 log.45006595._036901.job.log.tgz.1
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas      7716 Jun  3 19:48 heartbeat.json
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 19:48 boinc_mmap_file
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas      4353 Jun  3 19:48 pilotlog.txt
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas        28 Jun  3 19:48 wrapper_checkpoint.txt
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas   1577984 Jun  3 19:48 log.45006595._036901.job.log.1
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas       357 Jun  3 19:48 output.list
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas       620 Jun  3 19:48 runtime_log
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas   2058240 Jun  3 19:48 result.tar.gz
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas      8655 Jun  3 19:48 runtime_log.err
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas       655 Jun  3 19:48 khhKDmGnig7n9Rq4apOajLDm4fhM0noT9bVof3QYDmB3YKDm1S3Qxn.diag
[2025-06-03 19:48:26] -rw-r--r--. 1 boincer umatlas     20894 Jun  3 19:48 stderr.txt
[2025-06-03 19:48:26] HITS file was successfully produced:
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas 181492051 Jun  3 19:47 shared/HITS.pool.root.1
[2025-06-03 19:48:26]  *** Contents of shared directory: ***
[2025-06-03 19:48:26] total 388760
[2025-06-03 19:48:26] -rw-r--r--. 2 boincer umatlas 214003696 Jun  3 13:51 ATLAS.root_0
[2025-06-03 19:48:26] -rw-r--r--. 2 boincer umatlas    508880 Jun  3 13:51 input.tar.gz
[2025-06-03 19:48:26] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 13:51 start_atlas.sh
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas 181492051 Jun  3 19:47 HITS.pool.root.1
[2025-06-03 19:48:26] -rw-------. 1 boincer umatlas   2058240 Jun  3 19:48 result.tar.gz
19:48:28 (1744714): run_atlas exited; CPU time 46956.816146
19:48:28 (1744714): called boinc_finish(0)

</stderr_txt>
]]>

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