Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-03 17:32:57 (20416): Detected: vboxwrapper 26206
2025-06-03 17:32:57 (20416): Detected: BOINC client v7.16.11
2025-06-03 17:32:59 (20416): Detected: VirtualBox VboxManage Interface (Version: 6.1.14)
2025-06-03 17:32:59 (20416): Successfully copied 'init_data.xml' to the shared directory.
2025-06-03 17:33:00 (20416): Create VM. (boinc_505ef26d4ba62224, slot#2)
2025-06-03 17:33:00 (20416): Setting Memory Size for VM. (4600MB)
2025-06-03 17:33:01 (20416): Setting CPU Count for VM. (6)
2025-06-03 17:33:01 (20416): Setting Chipset Options for VM.
2025-06-03 17:33:01 (20416): Setting Graphics Controller Options for VM.
2025-06-03 17:33:02 (20416): Setting Boot Options for VM.
2025-06-03 17:33:02 (20416): Setting Network Configuration for NAT.
2025-06-03 17:33:02 (20416): Enabling VM Network Access.
2025-06-03 17:33:02 (20416): Disabling USB Support for VM.
2025-06-03 17:33:03 (20416): Disabling COM Port Support for VM.
2025-06-03 17:33:03 (20416): Disabling LPT Port Support for VM.
2025-06-03 17:33:03 (20416): Disabling Audio Support for VM.
2025-06-03 17:33:03 (20416): Disabling Clipboard Support for VM.
2025-06-03 17:33:04 (20416): Disabling Drag and Drop Support for VM.
2025-06-03 17:33:04 (20416): Adding storage controller(s) to VM.
2025-06-03 17:33:04 (20416): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-03 17:33:05 (20416): Adding VirtualBox Guest Additions to VM.
2025-06-03 17:33:06 (20416): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-03 17:33:06 (20416): forwarding host port 53093 to guest port 80
2025-06-03 17:33:06 (20416): Enabling remote desktop for VM.
2025-06-03 17:33:07 (20416): Enabling shared directory for VM.
2025-06-03 17:33:07 (20416): Starting VM using VBoxManage interface. (boinc_505ef26d4ba62224, slot#2)
2025-06-03 17:33:14 (20416): Successfully started VM. (PID = '18576')
2025-06-03 17:33:14 (20416): Reporting VM Process ID to BOINC.
2025-06-03 17:33:14 (20416): Guest Log: BIOS: VirtualBox 6.1.14
2025-06-03 17:33:14 (20416): Guest Log: CPUID EDX: 0x178bfbff
2025-06-03 17:33:14 (20416): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-03 17:33:14 (20416): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-03 17:33:14 (20416): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-03 17:33:14 (20416): Detected: Web Application Enabled (http://localhost:53093)
2025-06-03 17:33:14 (20416): Detected: Remote Desktop Enabled (localhost:53094)
2025-06-03 17:33:14 (20416): Preference change detected
2025-06-03 17:33:14 (20416): Setting CPU throttle for VM. (80%)
2025-06-03 17:33:14 (20416): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-03 17:33:16 (20416): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-03 17:33:16 (20416): Guest Log: BIOS: Booting from Hard Disk...
2025-06-03 17:33:20 (20416): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-03 17:33:20 (20416): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-03 17:33:20 (20416): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-03 17:33:32 (20416): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-03 17:33:32 (20416): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-03 17:33:49 (20416): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-03 17:33:49 (20416): Guest Log: 00:00:00.000282 main     Log opened 2025-06-03T17:33:47.141776000Z
2025-06-03 17:33:49 (20416): Guest Log: 00:00:00.000491 main     OS Product: Linux
2025-06-03 17:33:49 (20416): Guest Log: 00:00:00.000719 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-03 17:33:49 (20416): Guest Log: 00:00:00.000801 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-03 17:33:49 (20416): Guest Log: 00:00:00.000863 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-03 17:33:49 (20416): Guest Log: 00:00:00.000864 main     Process ID: 1337
2025-06-03 17:33:49 (20416): Guest Log: 00:00:00.000866 main     Package type: LINUX_64BITS_GENERIC
2025-06-03 17:33:49 (20416): Guest Log: 00:00:00.003804 main     5.2.32 r132073 started. Verbose level = 0
2025-06-03 17:33:49 (20416): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-03 17:33:49 (20416): Guest Log: [INFO] Mounting shared directory
2025-06-03 17:33:49 (20416): Guest Log: [INFO] Checking for init_data.xml
2025-06-03 17:33:56 (20416): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-03 17:33:56 (20416): Guest Log: [INFO] Detected branch: prod
2025-06-03 17:33:56 (20416): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-03 17:33:56 (20416): Guest Log: Copying input files
2025-06-03 17:33:59 (20416): Guest Log: 00:00:10.008232 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 611 784 128 000ns (GuestNow=1 748 993 638 933 401 000 ns GuestLast=1 748 972 027 149 273 000 ns fSetTimeLastLoop=true )
2025-06-03 17:34:01 (20416): Guest Log: Copied input files into RunAtlas.
2025-06-03 17:34:01 (20416): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-03 17:34:01 (20416): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-03 17:34:01 (20416): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-03 17:34:01 (20416): Guest Log: Further information can be found at the LHC@home message board.
2025-06-03 17:34:11 (20416): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-03 17:34:12 (20416): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-03 17:34:12 (20416): Guest Log: 2.6.3.0 1618 0 32224 146761 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-03 17:34:13 (20416): Guest Log: copied the webapp to /var/www
2025-06-03 17:34:13 (20416): Guest Log: ATHENA_PROC_NUMBER=6
2025-06-03 17:34:13 (20416): Guest Log: ATHENA_CORE_NUMBER=6
2025-06-03 17:34:14 (20416): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-03 17:34:14 (20416): Guest Log:  *** Starting ATLAS job. (PandaID=6677601354 taskID=45006595) ***
2025-06-03 19:07:21 (20416): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 19:07:30 (20416): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 19:13:33 (20416): Status Report: Elapsed Time: '6000.000000'
2025-06-03 19:13:33 (20416): Status Report: CPU Time: '21434.281250'
2025-06-03 19:17:01 (20416): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 19:17:11 (20416): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 19:19:51 (20416): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 19:20:02 (20416): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 19:23:02 (20416): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 19:23:12 (20416): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 20:05:08 (20416): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 20:05:18 (20416): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 20:54:39 (20416): Status Report: Elapsed Time: '12000.000000'
2025-06-03 20:54:39 (20416): Status Report: CPU Time: '52832.453125'
2025-06-03 21:29:49 (20416): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 21:29:59 (20416): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 22:35:01 (20416): Status Report: Elapsed Time: '18000.578594'
2025-06-03 22:35:01 (20416): Status Report: CPU Time: '84807.062500'
2025-06-04 00:15:11 (20416): Status Report: Elapsed Time: '24000.578594'
2025-06-04 00:15:11 (20416): Status Report: CPU Time: '116715.296875'
2025-06-04 01:46:35 (20416): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 01:46:45 (20416): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 01:50:55 (20416): Guest Log:  *** Job finished ***
2025-06-04 01:50:55 (20416): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:50,089 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:51,091 | INFO     | [data] queue_monitor thread has finished
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:51,091 | INFO     | [job] queue monitor thread has finished
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:52,650 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140087076202304)>', '<ExcThread(monitor, started 140086180042496)>']
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:52,733 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:52,734 | INFO     | [monitor] control thread has ended
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:57,664 | INFO     | all workflow threads have been joined
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:57,664 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:57,664 | INFO     | traces error code: 0
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:57,664 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:57,974 [wrapper] ==== pilot stdout END ====
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:57,990 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:58,005 [wrapper] pilotpid: 6048
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:58,020 [wrapper] Pilot exit status: 0
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:58,808 [wrapper] pandaids: 6677601354
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:58,947 [wrapper] cleanup supervisor_pilot  3450 6049
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:58,961 [wrapper] Test setup, not cleaning
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:58,979 [wrapper] apfmon messages muted
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:58,990 [wrapper] ==== wrapper stdout END ====
2025-06-04 01:50:55 (20416): Guest Log: 2025-06-04 07:49:59,000 [wrapper] ==== wrapper stderr END ====
2025-06-04 01:50:55 (20416): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 01:50:55 (20416): Guest Log:     "exeErrorCode": 0,
2025-06-04 01:50:55 (20416): Guest Log:     "exeErrorDiag": "",
2025-06-04 01:50:55 (20416): Guest Log:     "pilotErrorCode": 0,
2025-06-04 01:50:55 (20416): Guest Log:     "pilotErrorDiag": "",
2025-06-04 01:50:55 (20416): Guest Log:  *** Listing of results directory ***
2025-06-04 01:50:55 (20416): Guest Log: total 179308
2025-06-04 01:50:55 (20416): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 11:43 pilot3.tar.gz
2025-06-04 01:50:55 (20416): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 11:47 runpilot2-wrapper.sh
2025-06-04 01:50:55 (20416): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 11:47 queuedata.json
2025-06-04 01:50:55 (20416): Guest Log: -rwxr-xr-x. 1 atlas atlas     11405 Jun  3 23:34 init_data.xml
2025-06-04 01:50:55 (20416): Guest Log: -rwxr-xr-x. 1 atlas atlas    508876 Jun  3 23:34 input.tar.gz
2025-06-04 01:50:55 (20416): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  3 23:34 start_atlas.sh
2025-06-04 01:50:55 (20416): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  3 23:34 EVNT.45006593._001249.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 01:50:55 (20416): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  3 23:34 pandaJob.out
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas    986077 Jun  3 23:41 agis_schedconf.cvmfs.json
2025-06-04 01:50:55 (20416): Guest Log: drwx------. 4 atlas atlas      4096 Jun  3 23:41 pilot3
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas 174476966 Jun  4 07:48 HITS.45006595._031150.pool.root.1
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 07:48 pilot_heartbeat.json
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas      1033 Jun  4 07:49 memory_monitor_summary.json
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  4 07:49 agis_ddmendpoints.agis.ALL.json
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas    482111 Jun  4 07:49 log.45006595._031150.job.log.tgz.1
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas      7739 Jun  4 07:49 heartbeat.json
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas      4413 Jun  4 07:49 pilotlog.txt
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas   2201734 Jun  4 07:49 log.45006595._031150.job.log.1
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 07:49 output.list
2025-06-04 01:50:55 (20416): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 07:49 runtime_log
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas   2703360 Jun  4 07:49 result.tar.gz
2025-06-04 01:50:55 (20416): Guest Log: -rw-r--r--. 1 atlas atlas      8617 Jun  4 07:49 runtime_log.err
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas       667 Jun  4 07:49 nZLLDmCIfg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgrjKDmvMc7Ao.diag
2025-06-04 01:50:55 (20416): Guest Log: Looking for outputfile HITS.45006595._031150.pool.root.1
2025-06-04 01:50:55 (20416): Guest Log: HITS file was successfully produced
2025-06-04 01:50:55 (20416): Guest Log: -rw-------. 1 atlas atlas 174476966 Jun  4 07:48 /home/atlas/RunAtlas/HITS.45006595._031150.pool.root.1
2025-06-04 01:50:58 (20416): Guest Log: Successfully finished the ATLAS job!
2025-06-04 01:50:58 (20416): Guest Log: Copying the results back to the shared directory!
2025-06-04 01:50:59 (20416): Guest Log:  *** Contents of shared directory: ***
2025-06-04 01:50:59 (20416): Guest Log: total 383128
2025-06-04 01:50:59 (20416): Guest Log: -rwxrwxrwx. 1 root root 214600425 Jun  3 23:32 ATLAS.root_0
2025-06-04 01:50:59 (20416): Guest Log: -rwxrwxrwx. 1 root root 174476966 Jun  4  2025 HITS.pool.root.1
2025-06-04 01:50:59 (20416): Guest Log: -rwxrwxrwx. 1 root root     11405 Jun  3 23:32 init_data.xml
2025-06-04 01:50:59 (20416): Guest Log: -rwxrwxrwx. 1 root root    508876 Jun  3 17:52 input.tar.gz
2025-06-04 01:50:59 (20416): Guest Log: -rwxrwxrwx. 1 root root   2703360 Jun  4  2025 result.tar.gz
2025-06-04 01:50:59 (20416): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 17:52 start_atlas.sh
2025-06-04 01:50:59 (20416): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 01:50:59 (20416): VM Completion File Detected.
2025-06-04 01:50:59 (20416): Powering off VM.
2025-06-04 01:51:01 (20416): Successfully stopped VM.
2025-06-04 01:51:01 (20416): Deregistering VM. (boinc_505ef26d4ba62224, slot#2)
2025-06-04 01:51:02 (20416): Removing network bandwidth throttle group from VM.
2025-06-04 01:51:02 (20416): Removing VM from VirtualBox.
01:51:07 (20416): called boinc_finish(0)

</stderr_txt>
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