Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:54:46 (13668): wrapper (7.7.26015): starting
01:54:46 (13668): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 01:54:46] Arguments: --nthreads 8
[2025-06-04 01:54:46] Threads: 8
[2025-06-04 01:54:46] Checking for CVMFS
[2025-06-04 01:54:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 01:54:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 01:54:48] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 01:54:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 01:54:49] 2.11.2.0 20313 32636 93132 146761 2 59 24101209 25165825 2746 130560 0 17136527 99.779 20144718 5155 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 01:54:49] CVMFS is ok
[2025-06-04 01:54:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 01:54:49] Checking for apptainer binary...
[2025-06-04 01:54:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 01:54:49] Running /usr/bin/apptainer --version
[2025-06-04 01:54:49] apptainer version 1.3.2-1.el7
[2025-06-04 01:54:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:55:00] cg-vwn236.simple-grid.lan
[2025-06-04 01:55:00] apptainer works
[2025-06-04 01:55:00] Set ATHENA_PROC_NUMBER=8
[2025-06-04 01:55:00] Set ATHENA_CORE_NUMBER=8
[2025-06-04 01:55:00] Starting ATLAS job with PandaID=6677675962
[2025-06-04 01:55:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 06:09:22]  *** The last 200 lines of the pilot log: ***
[2025-06-04 06:09:22] 2025-06-04 04:09:10,526 | INFO     | extracted standard info from prmon json
[2025-06-04 06:09:22] 2025-06-04 04:09:10,526 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 06:09:22] 2025-06-04 04:09:10,526 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 06:09:22] 2025-06-04 04:09:10,526 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 06:09:22] 2025-06-04 04:09:10,526 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 06:09:22] 2025-06-04 04:09:10,532 | INFO     | fitting pss+swap vs Time
[2025-06-04 06:09:22] 2025-06-04 04:09:10,533 | INFO     | sum of square deviations: 4233158440.0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,535 | INFO     | sum of deviations: 119124252051.0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,535 | INFO     | mean x: 1749002850.0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,536 | INFO     | mean y: 2404304.8451882843
[2025-06-04 06:09:22] 2025-06-04 04:09:10,536 | INFO     | -- intersect: -49215847101.14691
[2025-06-04 06:09:22] 2025-06-04 04:09:10,536 | INFO     | intersect: -49215847101.14691
[2025-06-04 06:09:22] 2025-06-04 04:09:10,536 | INFO     | chi2: 7.773856458255462
[2025-06-04 06:09:22] 2025-06-04 04:09:10,537 | INFO     | sum of square deviations: 3972995422.5
[2025-06-04 06:09:22] 2025-06-04 04:09:10,539 | INFO     | sum of deviations: 132155251970.50002
[2025-06-04 06:09:22] 2025-06-04 04:09:10,539 | INFO     | mean x: 1749002697.5
[2025-06-04 06:09:22] 2025-06-04 04:09:10,539 | INFO     | mean y: 2411786.158119658
[2025-06-04 06:09:22] 2025-06-04 04:09:10,539 | INFO     | -- intersect: -58175327577.99962
[2025-06-04 06:09:22] 2025-06-04 04:09:10,540 | INFO     | intersect: -58175327577.99962
[2025-06-04 06:09:22] 2025-06-04 04:09:10,540 | INFO     | chi2: 7.062448351866092
[2025-06-04 06:09:22] 2025-06-04 04:09:10,540 | INFO     | current chi2=7.062448351866092 (change=9.151289456005962 %)
[2025-06-04 06:09:22] 2025-06-04 04:09:10,540 | INFO     | right removable region: 233
[2025-06-04 06:09:22] 2025-06-04 04:09:10,541 | INFO     | sum of square deviations: 3972995422.5
[2025-06-04 06:09:22] 2025-06-04 04:09:10,543 | INFO     | sum of deviations: 37441492682.0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,543 | INFO     | mean x: 1749003002.5
[2025-06-04 06:09:22] 2025-06-04 04:09:10,543 | INFO     | mean y: 2452148.128205128
[2025-06-04 06:09:22] 2025-06-04 04:09:10,544 | INFO     | -- intersect: -16480145024.786049
[2025-06-04 06:09:22] 2025-06-04 04:09:10,544 | INFO     | intersect: -16480145024.786049
[2025-06-04 06:09:22] 2025-06-04 04:09:10,544 | INFO     | chi2: 2.8778077612211157
[2025-06-04 06:09:22] 2025-06-04 04:09:10,544 | INFO     | current chi2=2.8778077612211157 (change=62.98095061730884 %)
[2025-06-04 06:09:22] 2025-06-04 04:09:10,545 | INFO     | sum of square deviations: 3723716330.0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,547 | INFO     | sum of deviations: -14024308578.000002
[2025-06-04 06:09:22] 2025-06-04 04:09:10,547 | INFO     | mean x: 1749003155.0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,547 | INFO     | mean y: 2483510.9257641924
[2025-06-04 06:09:22] 2025-06-04 04:09:10,547 | INFO     | -- intersect: 6589601802.403022
[2025-06-04 06:09:22] 2025-06-04 04:09:10,547 | INFO     | intersect: 6589601802.403022
[2025-06-04 06:09:22] 2025-06-04 04:09:10,548 | INFO     | chi2: 0.8764450147358595
[2025-06-04 06:09:22] 2025-06-04 04:09:10,548 | INFO     | current chi2=0.8764450147358595 (change=69.54469903980088 %)
[2025-06-04 06:09:22] 2025-06-04 04:09:10,548 | INFO     | sum of square deviations: 3485088600.0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,550 | INFO     | sum of deviations: -15897214483.5
[2025-06-04 06:09:22] 2025-06-04 04:09:10,551 | INFO     | mean x: 1749003307.5
[2025-06-04 06:09:22] 2025-06-04 04:09:10,551 | INFO     | mean y: 2484646.9776785714
[2025-06-04 06:09:22] 2025-06-04 04:09:10,551 | INFO     | -- intersect: 7980554619.625835
[2025-06-04 06:09:22] 2025-06-04 04:09:10,551 | INFO     | intersect: 7980554619.625835
[2025-06-04 06:09:22] 2025-06-04 04:09:10,551 | INFO     | chi2: 0.8324957314797338
[2025-06-04 06:09:22] 2025-06-04 04:09:10,551 | INFO     | current chi2=0.8324957314797338 (change=5.014494066050566 %)
[2025-06-04 06:09:22] 2025-06-04 04:09:10,552 | INFO     | left removable region: 30
[2025-06-04 06:09:22] 2025-06-04 04:09:10,552 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,554 | INFO     | sum of deviations: 2538328217.999999
[2025-06-04 06:09:22] 2025-06-04 04:09:10,554 | INFO     | mean x: 1749003582.0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,554 | INFO     | mean y: 2492140.945812808
[2025-06-04 06:09:22] 2025-06-04 04:09:10,554 | INFO     | -- intersect: -1709029827.355693
[2025-06-04 06:09:22] 2025-06-04 04:09:10,554 | INFO     | intersect: -1709029827.355693
[2025-06-04 06:09:22] 2025-06-04 04:09:10,555 | INFO     | chi2: 0.0005554881431801083
[2025-06-04 06:09:22] 2025-06-04 04:09:10,555 | INFO     | -- intersect: -1709029827.355693
[2025-06-04 06:09:22] 2025-06-04 04:09:10,555 | INFO     | current memory leak: 0.98 B/s (using 203 data points, chi2=0.00)
[2025-06-04 06:09:22] 2025-06-04 04:09:10,556 | INFO     | ..............................
[2025-06-04 06:09:22] 2025-06-04 04:09:10,556 | INFO     | . Timing measurements:
[2025-06-04 06:09:22] 2025-06-04 04:09:10,557 | INFO     | . get job = 0 s
[2025-06-04 06:09:22] 2025-06-04 04:09:10,557 | INFO     | . initial setup = 6 s
[2025-06-04 06:09:22] 2025-06-04 04:09:10,557 | INFO     | . payload setup = 150 s
[2025-06-04 06:09:22] 2025-06-04 04:09:10,557 | INFO     | . stage-in = 0 s
[2025-06-04 06:09:22] 2025-06-04 04:09:10,557 | INFO     | . payload execution = 14696 s
[2025-06-04 06:09:22] 2025-06-04 04:09:10,557 | INFO     | . stage-out = 1 s
[2025-06-04 06:09:22] 2025-06-04 04:09:10,557 | INFO     | . log creation = 0 s
[2025-06-04 06:09:22] 2025-06-04 04:09:10,557 | INFO     | ..............................
[2025-06-04 06:09:22] 2025-06-04 04:09:10,695 | INFO     | 
[2025-06-04 06:09:22] 2025-06-04 04:09:10,695 | INFO     | job summary report
[2025-06-04 06:09:22] 2025-06-04 04:09:10,695 | INFO     | --------------------------------------------------
[2025-06-04 06:09:22] 2025-06-04 04:09:10,695 | INFO     | PanDA job id: 6677675962
[2025-06-04 06:09:22] 2025-06-04 04:09:10,695 | INFO     | task id: 45006595
[2025-06-04 06:09:22] 2025-06-04 04:09:10,696 | INFO     | errors: (none)
[2025-06-04 06:09:22] 2025-06-04 04:09:10,696 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 06:09:22] 2025-06-04 04:09:10,696 | INFO     | pilot state: finished 
[2025-06-04 06:09:22] 2025-06-04 04:09:10,696 | INFO     | transexitcode: 0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,696 | INFO     | exeerrorcode: 0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,696 | INFO     | exeerrordiag: 
[2025-06-04 06:09:22] 2025-06-04 04:09:10,696 | INFO     | exitcode: 0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,696 | INFO     | exitmsg: OK
[2025-06-04 06:09:22] 2025-06-04 04:09:10,696 | INFO     | cpuconsumptiontime: 53639 s
[2025-06-04 06:09:22] 2025-06-04 04:09:10,696 | INFO     | nevents: 400
[2025-06-04 06:09:22] 2025-06-04 04:09:10,696 | INFO     | neventsw: 0
[2025-06-04 06:09:22] 2025-06-04 04:09:10,697 | INFO     | pid: 30658
[2025-06-04 06:09:22] 2025-06-04 04:09:10,697 | INFO     | pgrp: 30658
[2025-06-04 06:09:22] 2025-06-04 04:09:10,697 | INFO     | corecount: 8
[2025-06-04 06:09:22] 2025-06-04 04:09:10,697 | INFO     | event service: False
[2025-06-04 06:09:22] 2025-06-04 04:09:10,697 | INFO     | sizes: {0: 2405012, 1: 2405211, 12: 2405211, 23: 2405239, 33: 2405267, 44: 2405323, 55: 2405479, 66: 2405507, 76: 2405535, 87: 2405591, 88: 2405825, 98: 2406133, 1
[2025-06-04 06:09:22] 2025-06-04 04:09:10,697 | INFO     | --------------------------------------------------
[2025-06-04 06:09:22] 2025-06-04 04:09:10,697 | INFO     | 
[2025-06-04 06:09:22] 2025-06-04 04:09:10,697 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-06-04 06:09:22] 2025-06-04 04:09:10,724 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,725 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,725 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,725 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,725 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,725 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,725 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,725 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,725 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,726 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,726 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,726 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,726 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,726 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,726 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,726 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,726 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,726 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 06:09:22] 2025-06-04 04:09:10,726 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,727 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 06:09:22] 2025-06-04 04:09:10,727 | INFO     | job 6677675962 has completed (purged errors)
[2025-06-04 06:09:22] 2025-06-04 04:09:10,727 | INFO     | overall cleanup function is called
[2025-06-04 06:09:22] 2025-06-04 04:09:11,735 | INFO     | --- collectZombieJob: --- 10, [30658]
[2025-06-04 06:09:22] 2025-06-04 04:09:11,735 | INFO     | zombie collector waiting for pid 30658
[2025-06-04 06:09:22] 2025-06-04 04:09:11,735 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 06:09:22] 2025-06-04 04:09:11,736 | INFO     | collected zombie processes
[2025-06-04 06:09:22] 2025-06-04 04:09:11,736 | INFO     | will attempt to kill all subprocesses of pid=30658
[2025-06-04 06:09:22] 2025-06-04 04:09:11,834 | INFO     | process IDs to be killed: [30658] (in reverse order)
[2025-06-04 06:09:22] 2025-06-04 04:09:11,898 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 06:09:22] 2025-06-04 04:09:11,898 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 06:09:22] 2025-06-04 04:09:11,902 | INFO     | did not find any defunct processes belonging to 30658
[2025-06-04 06:09:22] 2025-06-04 04:09:11,905 | INFO     | did not find any defunct processes belonging to 30658
[2025-06-04 06:09:22] 2025-06-04 04:09:11,906 | INFO     | ready for new job
[2025-06-04 06:09:22] 2025-06-04 04:09:11,906 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 06:09:22] 2025-06-04 04:09:11,908 | INFO     | **************************************
[2025-06-04 06:09:22] 2025-06-04 04:09:11,908 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 06:09:22] 2025-06-04 04:09:11,908 | INFO     | **************************************
[2025-06-04 06:09:22] 2025-06-04 04:09:11,908 | INFO     | 
[2025-06-04 06:09:22] 2025-06-04 04:09:11,909 | INFO     | pilot is running in a VM
[2025-06-04 06:09:22] 2025-06-04 04:09:11,909 | INFO     | architecture information:
[2025-06-04 06:09:22] 2025-06-04 04:09:11,910 | INFO     | executing command: cat /etc/os-release
[2025-06-04 06:09:22] 2025-06-04 04:09:11,932 | INFO     | cat /etc/os-release:
[2025-06-04 06:09:22] NAME="CentOS Linux"
[2025-06-04 06:09:22] VERSION="7 (Core)"
[2025-06-04 06:09:22] ID="centos"
[2025-06-04 06:09:22] ID_LIKE="rhel fedora"
[2025-06-04 06:09:22] VERSION_ID="7"
[2025-06-04 06:09:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 06:09:22] ANSI_COLOR="0;31"
[2025-06-04 06:09:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 06:09:22] HOME_URL="https://www.centos.org/"
[2025-06-04 06:09:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 06:09:22] 
[2025-06-04 06:09:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 06:09:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 06:09:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 06:09:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 06:09:22] 
[2025-06-04 06:09:22] 2025-06-04 04:09:11,932 | INFO     | **************************************
[2025-06-04 06:09:22] 2025-06-04 04:09:12,434 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-06-04 06:09:22] 2025-06-04 04:09:12,460 | INFO     | sufficient remaining disk space (497347985408 B)
[2025-06-04 06:09:22] 2025-06-04 04:09:12,460 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 06:09:22] 2025-06-04 04:09:12,461 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 06:09:22] 2025-06-04 04:09:12,461 | INFO     | update_server=False
[2025-06-04 06:09:22] 2025-06-04 04:09:12,461 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 06:09:22] 2025-06-04 04:09:12,461 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:09:22] 2025-06-04 04:09:12,462 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 06:09:22] 2025-06-04 04:09:12,462 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:09:22] 2025-06-04 04:09:12,463 | INFO     | aborting loop
[2025-06-04 06:09:22] 2025-06-04 04:09:12,463 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 06:09:22] 2025-06-04 04:09:12,463 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 06:09:22] 2025-06-04 04:09:12,463 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 06:09:22] 2025-06-04 04:09:12,463 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 06:09:22] 2025-06-04 04:09:12,464 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 06:09:22] 2025-06-04 04:09:12,927 | INFO     | all job control threads have been joined
[2025-06-04 06:09:22] 2025-06-04 04:09:12,947 | INFO     | all data control threads have been joined
[2025-06-04 06:09:22] 2025-06-04 04:09:13,464 | INFO     | [job] queue monitor thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:13,465 | INFO     | [job] retrieve thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:13,468 | INFO     | [job] job monitor thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:13,549 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:13,550 | INFO     | [job] validate thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:13,585 | INFO     | [payload] failed_post thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:13,587 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:13,615 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:13,800 | INFO     | all payload control threads have been joined
[2025-06-04 06:09:22] 2025-06-04 04:09:13,933 | INFO     | [job] control thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:13,953 | INFO     | [data] control thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:14,004 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:14,083 | INFO     | [data] copytool_in thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:14,469 | INFO     | [data] copytool_out thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:14,806 | INFO     | [payload] control thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:14,929 | INFO     | [payload] validate_post thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:16,473 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 06:09:22] 2025-06-04 04:09:17,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140673545262912)>', '<ExcThread(monitor, started 140672954771200)>']
[2025-06-04 06:09:22] 2025-06-04 04:09:17,492 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 06:09:22] 2025-06-04 04:09:17,492 | INFO     | [monitor] control thread has ended
[2025-06-04 06:09:22] 2025-06-04 04:09:22,198 | INFO     | all workflow threads have been joined
[2025-06-04 06:09:22] 2025-06-04 04:09:22,198 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 06:09:22] 2025-06-04 04:09:22,198 | INFO     | traces error code: 0
[2025-06-04 06:09:22] 2025-06-04 04:09:22,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 06:09:22] 2025-06-04 04:09:22,457 [wrapper] ==== pilot stdout END ====
[2025-06-04 06:09:22] 2025-06-04 04:09:22,491 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 06:09:22] 2025-06-04 04:09:22,513 [wrapper] pilotpid: 17901
[2025-06-04 06:09:22] 2025-06-04 04:09:22,533 [wrapper] Pilot exit status: 0
[2025-06-04 06:09:22] 2025-06-04 04:09:22,605 [wrapper] pandaids: 6677675962
[2025-06-04 06:09:22] 2025-06-04 04:09:22,653 [wrapper] cleanup supervisor_pilot 31694 17902
[2025-06-04 06:09:22] 2025-06-04 04:09:22,665 [wrapper] Test setup, not cleaning
[2025-06-04 06:09:22] 2025-06-04 04:09:22,681 [wrapper] apfmon messages muted
[2025-06-04 06:09:22] 2025-06-04 04:09:22,689 [wrapper] ==== wrapper stdout END ====
[2025-06-04 06:09:22] 2025-06-04 04:09:22,696 [wrapper] ==== wrapper stderr END ====
[2025-06-04 06:09:22]  *** Error codes and diagnostics ***
[2025-06-04 06:09:22]     "exeErrorCode": 0,
[2025-06-04 06:09:22]     "exeErrorDiag": "",
[2025-06-04 06:09:22]     "pilotErrorCode": 0,
[2025-06-04 06:09:22]     "pilotErrorDiag": "",
[2025-06-04 06:09:22]  *** Listing of results directory ***
[2025-06-04 06:09:22] total 395092
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc    495897 Jun  3 16:52 pilot3.tar.gz
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc      5111 Jun  3 16:56 queuedata.json
[2025-06-04 06:09:22] -rwx------. 1 boinc boinc     37140 Jun  3 16:57 runpilot2-wrapper.sh
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc       100 Jun  4 01:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 06:09:22] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 01:54 run_atlas
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc       105 Jun  4 01:54 job.xml
[2025-06-04 06:09:22] -rw-r--r--. 2 boinc boinc 213372366 Jun  4 01:54 EVNT.45006593._001456.pool.root.1
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc      6392 Jun  4 01:54 init_data.xml
[2025-06-04 06:09:22] -rw-r--r--. 2 boinc boinc     15093 Jun  4 01:54 start_atlas.sh
[2025-06-04 06:09:22] drwxrwx--x. 2 boinc boinc        68 Jun  4 01:54 shared
[2025-06-04 06:09:22] -rw-r--r--. 2 boinc boinc    508877 Jun  4 01:54 input.tar.gz
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc         0 Jun  4 01:54 boinc_lockfile
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc      2524 Jun  4 01:55 pandaJob.out
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc    986077 Jun  4 01:58 agis_schedconf.cvmfs.json
[2025-06-04 06:09:22] drwx------. 4 boinc boinc      4096 Jun  4 01:58 pilot3
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc 184024288 Jun  4 06:08 HITS.45006595._036229.pool.root.1
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc       531 Jun  4 06:08 boinc_task_state.xml
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc        28 Jun  4 06:08 wrapper_checkpoint.txt
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc      1018 Jun  4 06:08 memory_monitor_summary.json
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc   1603667 Jun  4 06:09 agis_ddmendpoints.agis.ALL.json
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc    383476 Jun  4 06:09 log.45006595._036229.job.log.tgz.1
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc        95 Jun  4 06:09 pilot_heartbeat.json
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc      7687 Jun  4 06:09 heartbeat.json
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc      4540 Jun  4 06:09 pilotlog.txt
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc      8192 Jun  4 06:09 boinc_mmap_file
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc   1296352 Jun  4 06:09 log.45006595._036229.job.log.1
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc       357 Jun  4 06:09 output.list
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc       620 Jun  4 06:09 runtime_log
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc   1699840 Jun  4 06:09 result.tar.gz
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc      8673 Jun  4 06:09 runtime_log.err
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc       656 Jun  4 06:09 66oLDmKGig7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmugkKDmvlMOjm.diag
[2025-06-04 06:09:22] -rw-r--r--. 1 boinc boinc     20512 Jun  4 06:09 stderr.txt
[2025-06-04 06:09:22] HITS file was successfully produced:
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc 184024288 Jun  4 06:08 shared/HITS.pool.root.1
[2025-06-04 06:09:22]  *** Contents of shared directory: ***
[2025-06-04 06:09:22] total 390260
[2025-06-04 06:09:22] -rw-r--r--. 2 boinc boinc 213372366 Jun  4 01:54 ATLAS.root_0
[2025-06-04 06:09:22] -rw-r--r--. 2 boinc boinc     15093 Jun  4 01:54 start_atlas.sh
[2025-06-04 06:09:22] -rw-r--r--. 2 boinc boinc    508877 Jun  4 01:54 input.tar.gz
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc 184024288 Jun  4 06:08 HITS.pool.root.1
[2025-06-04 06:09:22] -rw-------. 1 boinc boinc   1699840 Jun  4 06:09 result.tar.gz
06:09:24 (13668): run_atlas exited; CPU time 53848.611271
06:09:24 (13668): called boinc_finish(0)

</stderr_txt>
]]>

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