Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:01:48 (685660): wrapper (7.7.26015): starting
04:01:48 (685660): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 04:01:48] Arguments: --nthreads 12
[2025-06-04 04:01:48] Threads: 12
[2025-06-04 04:01:48] Checking for CVMFS
[2025-06-04 04:01:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 04:01:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 04:01:48] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 04:01:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 04:01:50] 2.12.7.0 9268 7810 150576 146763 1 230 37530046 46080001 39346 130560 0 47657727 99.940 8815273 21720 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-06-04 04:01:50] CVMFS is ok
[2025-06-04 04:01:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 04:01:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 04:01:50] Further information can be found at the LHC@home message board.
[2025-06-04 04:01:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 04:01:50] Checking for apptainer binary...
[2025-06-04 04:01:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 04:01:50] Running /usr/bin/apptainer --version
[2025-06-04 04:01:50] apptainer version 1.4.1-1.el9
[2025-06-04 04:01:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 04:01:51] mff2104.farm.particle.cz
[2025-06-04 04:01:51] apptainer works
[2025-06-04 04:03:34] Set ATHENA_PROC_NUMBER=12
[2025-06-04 04:03:34] Set ATHENA_CORE_NUMBER=12
[2025-06-04 04:03:34] Starting ATLAS job with PandaID=6677617221
[2025-06-04 04:03:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:26:21]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:26:21] 2025-06-04 03:25:27,744 | INFO     | job 6677617221 has finished - writing final server update
[2025-06-04 05:26:21] 2025-06-04 03:25:27,744 | INFO     | total number of processed events: 400 (read)
[2025-06-04 05:26:21] 2025-06-04 03:25:27,777 | INFO     | executing command: lscpu
[2025-06-04 05:26:21] 2025-06-04 03:25:28,039 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 05:26:21] 2025-06-04 03:25:29,217 | INFO     | monitor loop #340: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:29,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:31,078 | INFO     | PID=728574 has CPU usage=16.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 05:26:21] 2025-06-04 03:25:31,085 | INFO     | .. there are 104 such processes running
[2025-06-04 05:26:21] 2025-06-04 03:25:31,727 | INFO     | monitor loop #341: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:31,727 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:34,234 | INFO     | monitor loop #342: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:34,234 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:36,738 | INFO     | monitor loop #343: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:36,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:39,243 | INFO     | monitor loop #344: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:39,243 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:41,751 | INFO     | monitor loop #345: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:41,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:44,258 | INFO     | monitor loop #346: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:44,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:46,768 | INFO     | monitor loop #347: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:46,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:49,277 | INFO     | monitor loop #348: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:49,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:51,793 | INFO     | monitor loop #349: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:51,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:54,306 | INFO     | monitor loop #350: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:54,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:54,555 | INFO     | PID=728574 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 05:26:21] 2025-06-04 03:25:54,555 | INFO     | .. there are 104 such processes running
[2025-06-04 05:26:21] 2025-06-04 03:25:56,811 | INFO     | monitor loop #351: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:56,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:25:59,320 | INFO     | monitor loop #352: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:25:59,322 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:26:01,827 | INFO     | monitor loop #353: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:26:01,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:26:04,332 | INFO     | monitor loop #354: job 0:6677617221 is in state 'finished'
[2025-06-04 05:26:21] 2025-06-04 03:26:04,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 05:26:21] 2025-06-04 03:26:04,388 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 05:26:21] 2025-06-04 03:26:04,388 | INFO     | using path: /scratch/.boinc/slots/2/PanDA_Pilot-6677617221/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 05:26:21] 2025-06-04 03:26:04,389 | INFO     | extracted standard info from prmon json
[2025-06-04 05:26:21] 2025-06-04 03:26:04,389 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 05:26:21] 2025-06-04 03:26:04,389 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 05:26:21] 2025-06-04 03:26:04,391 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 05:26:21] 2025-06-04 03:26:04,391 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 05:26:21] 2025-06-04 03:26:04,395 | INFO     | fitting pss+swap vs Time
[2025-06-04 05:26:21] 2025-06-04 03:26:04,396 | INFO     | sum of square deviations: 101878308.8115942
[2025-06-04 05:26:21] 2025-06-04 03:26:04,396 | INFO     | sum of deviations: 1329223118.188406
[2025-06-04 05:26:21] 2025-06-04 03:26:04,396 | INFO     | mean x: 1749005264.2463768
[2025-06-04 05:26:21] 2025-06-04 03:26:04,396 | INFO     | mean y: 2700213.7536231885
[2025-06-04 05:26:21] 2025-06-04 03:26:04,396 | INFO     | -- intersect: -22816860281.39401
[2025-06-04 05:26:21] 2025-06-04 03:26:04,397 | INFO     | intersect: -22816860281.39401
[2025-06-04 05:26:21] 2025-06-04 03:26:04,397 | INFO     | chi2: 0.20542305202834946
[2025-06-04 05:26:21] 2025-06-04 03:26:04,397 | INFO     | -- intersect: -22816860281.39401
[2025-06-04 05:26:21] 2025-06-04 03:26:04,397 | INFO     | current memory leak: 13.05 B/s (using 69 data points, chi2=0.21)
[2025-06-04 05:26:21] 2025-06-04 03:26:04,397 | INFO     | ..............................
[2025-06-04 05:26:21] 2025-06-04 03:26:04,398 | INFO     | . Timing measurements:
[2025-06-04 05:26:21] 2025-06-04 03:26:04,398 | INFO     | . get job = 0 s
[2025-06-04 05:26:21] 2025-06-04 03:26:04,398 | INFO     | . initial setup = 4 s
[2025-06-04 05:26:21] 2025-06-04 03:26:04,398 | INFO     | . payload setup = 69 s
[2025-06-04 05:26:21] 2025-06-04 03:26:04,398 | INFO     | . stage-in = 0 s
[2025-06-04 05:26:21] 2025-06-04 03:26:04,398 | INFO     | . payload execution = 4679 s
[2025-06-04 05:26:21] 2025-06-04 03:26:04,398 | INFO     | . stage-out = 1 s
[2025-06-04 05:26:21] 2025-06-04 03:26:04,398 | INFO     | . log creation = 0 s
[2025-06-04 05:26:21] 2025-06-04 03:26:04,398 | INFO     | ..............................
[2025-06-04 05:26:21] 2025-06-04 03:26:04,544 | INFO     | 
[2025-06-04 05:26:21] 2025-06-04 03:26:04,544 | INFO     | job summary report
[2025-06-04 05:26:21] 2025-06-04 03:26:04,544 | INFO     | --------------------------------------------------
[2025-06-04 05:26:21] 2025-06-04 03:26:04,544 | INFO     | PanDA job id: 6677617221
[2025-06-04 05:26:21] 2025-06-04 03:26:04,544 | INFO     | task id: 45006595
[2025-06-04 05:26:21] 2025-06-04 03:26:04,544 | INFO     | errors: (none)
[2025-06-04 05:26:21] 2025-06-04 03:26:04,544 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:26:21] 2025-06-04 03:26:04,544 | INFO     | pilot state: finished 
[2025-06-04 05:26:21] 2025-06-04 03:26:04,544 | INFO     | transexitcode: 0
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | exeerrorcode: 0
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | exeerrordiag: 
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | exitcode: 0
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | exitmsg: OK
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | cpuconsumptiontime: 34297 s
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | nevents: 400
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | neventsw: 0
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | pid: 802338
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | pgrp: 802338
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | corecount: 12
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | event service: False
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | sizes: {0: 2404356, 1: 2405042, 2: 2405241, 12: 2405241, 23: 2405269, 32: 2405503, 34: 2405659, 4753: 2431721, 4755: 2440664, 4757: 2440720, 4795: 2440890}
[2025-06-04 05:26:21] 2025-06-04 03:26:04,545 | INFO     | --------------------------------------------------
[2025-06-04 05:26:21] 2025-06-04 03:26:04,546 | INFO     | 
[2025-06-04 05:26:21] 2025-06-04 03:26:04,546 | INFO     | executing command: ls -lF /scratch/.boinc/slots/2
[2025-06-04 05:26:21] 2025-06-04 03:26:04,661 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,662 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,662 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,662 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,662 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,662 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,662 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,662 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,662 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:26:21] 2025-06-04 03:26:04,663 | INFO     | job 6677617221 has completed (purged errors)
[2025-06-04 05:26:21] 2025-06-04 03:26:04,664 | INFO     | overall cleanup function is called
[2025-06-04 05:26:21] 2025-06-04 03:26:05,681 | INFO     | --- collectZombieJob: --- 10, [802338]
[2025-06-04 05:26:21] 2025-06-04 03:26:05,681 | INFO     | zombie collector waiting for pid 802338
[2025-06-04 05:26:21] 2025-06-04 03:26:05,681 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:26:21] 2025-06-04 03:26:05,681 | INFO     | collected zombie processes
[2025-06-04 05:26:21] 2025-06-04 03:26:05,681 | INFO     | will attempt to kill all subprocesses of pid=802338
[2025-06-04 05:26:21] 2025-06-04 03:26:06,877 | INFO     | process IDs to be killed: [802338] (in reverse order)
[2025-06-04 05:26:21] 2025-06-04 03:26:08,188 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:26:21] 2025-06-04 03:26:08,191 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:26:21] 2025-06-04 03:26:08,228 | INFO     | did not find any defunct processes belonging to 802338
[2025-06-04 05:26:21] 2025-06-04 03:26:08,264 | INFO     | did not find any defunct processes belonging to 802338
[2025-06-04 05:26:21] 2025-06-04 03:26:08,265 | INFO     | ready for new job
[2025-06-04 05:26:21] 2025-06-04 03:26:08,265 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:26:21] 2025-06-04 03:26:08,267 | INFO     | **************************************
[2025-06-04 05:26:21] 2025-06-04 03:26:08,267 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:26:21] 2025-06-04 03:26:08,267 | INFO     | **************************************
[2025-06-04 05:26:21] 2025-06-04 03:26:08,267 | INFO     | 
[2025-06-04 05:26:21] 2025-06-04 03:26:08,274 | INFO     | architecture information:
[2025-06-04 05:26:21] 2025-06-04 03:26:08,274 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:26:21] 2025-06-04 03:26:08,378 | INFO     | cat /etc/os-release:
[2025-06-04 05:26:21] NAME="CentOS Linux"
[2025-06-04 05:26:21] VERSION="7 (Core)"
[2025-06-04 05:26:21] ID="centos"
[2025-06-04 05:26:21] ID_LIKE="rhel fedora"
[2025-06-04 05:26:21] VERSION_ID="7"
[2025-06-04 05:26:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:26:21] ANSI_COLOR="0;31"
[2025-06-04 05:26:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:26:21] HOME_URL="https://www.centos.org/"
[2025-06-04 05:26:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:26:21] 
[2025-06-04 05:26:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:26:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:26:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:26:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:26:21] 
[2025-06-04 05:26:21] 2025-06-04 03:26:08,378 | INFO     | **************************************
[2025-06-04 05:26:21] 2025-06-04 03:26:08,882 | INFO     | executing command: df -mP /scratch/.boinc/slots/2
[2025-06-04 05:26:21] 2025-06-04 03:26:08,968 | INFO     | sufficient remaining disk space (1672995667968 B)
[2025-06-04 05:26:21] 2025-06-04 03:26:08,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:26:21] 2025-06-04 03:26:08,969 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:26:21] 2025-06-04 03:26:08,969 | INFO     | update_server=False
[2025-06-04 05:26:21] 2025-06-04 03:26:08,969 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:26:21] 2025-06-04 03:26:08,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:26:21] 2025-06-04 03:26:08,969 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 05:26:21] 2025-06-04 03:26:08,970 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:26:21] 2025-06-04 03:26:08,970 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:26:21] 2025-06-04 03:26:08,970 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:26:21] 2025-06-04 03:26:08,973 | INFO     | all job control threads have been joined
[2025-06-04 05:26:21] 2025-06-04 03:26:09,222 | INFO     | all payload control threads have been joined
[2025-06-04 05:26:21] 2025-06-04 03:26:09,348 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 05:26:21] 2025-06-04 03:26:09,348 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 05:26:21] 2025-06-04 03:26:09,348 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:26:21] 2025-06-04 03:26:09,348 | INFO     | will abort loop
[2025-06-04 05:26:21] 2025-06-04 03:26:09,558 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:26:21] 2025-06-04 03:26:09,949 | INFO     | all data control threads have been joined
[2025-06-04 05:26:21] 2025-06-04 03:26:09,976 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:09,980 | INFO     | [job] control thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:10,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:26:21] 2025-06-04 03:26:10,228 | INFO     | [payload] control thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:10,276 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:10,356 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:10,404 | INFO     | [job] validate thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:10,564 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:10,797 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:10,820 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:10,957 | INFO     | [data] control thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:10,964 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:11,089 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:11,401 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:11,410 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:12,119 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:12,981 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:26:21] 2025-06-04 03:26:14,965 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140390964877120)>', '<ExcThread(monitor, started 140390317414144)>']
[2025-06-04 05:26:21] 2025-06-04 03:26:15,030 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:26:21] 2025-06-04 03:26:15,030 | INFO     | [monitor] control thread has ended
[2025-06-04 05:26:21] 2025-06-04 03:26:19,996 | INFO     | all workflow threads have been joined
[2025-06-04 05:26:21] 2025-06-04 03:26:19,997 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:26:21] 2025-06-04 03:26:19,997 | INFO     | traces error code: 0
[2025-06-04 05:26:21] 2025-06-04 03:26:19,997 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:26:21] 2025-06-04 03:26:20,270 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:26:21] 2025-06-04 03:26:20,292 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:26:21] 2025-06-04 03:26:20,322 [wrapper] pilotpid: 728574
[2025-06-04 05:26:21] 2025-06-04 03:26:20,344 [wrapper] Pilot exit status: 0
[2025-06-04 05:26:21] 2025-06-04 03:26:20,441 [wrapper] pandaids: 6677617221
[2025-06-04 05:26:21] 2025-06-04 03:26:20,815 [wrapper] cleanup supervisor_pilot 1497514 728575
[2025-06-04 05:26:21] 2025-06-04 03:26:20,859 [wrapper] Test setup, not cleaning
[2025-06-04 05:26:21] 2025-06-04 03:26:20,901 [wrapper] apfmon messages muted
[2025-06-04 05:26:21] 2025-06-04 03:26:20,938 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:26:21] 2025-06-04 03:26:20,981 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:26:21]  *** Error codes and diagnostics ***
[2025-06-04 05:26:21]     "exeErrorCode": 0,
[2025-06-04 05:26:21]     "exeErrorDiag": "",
[2025-06-04 05:26:21]     "pilotErrorCode": 0,
[2025-06-04 05:26:21]     "pilotErrorDiag": "",
[2025-06-04 05:26:21]  *** Listing of results directory ***
[2025-06-04 05:26:21] total 389028
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc    495897 Jun  3 14:14 pilot3.tar.gz
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc      5111 Jun  3 14:15 queuedata.json
[2025-06-04 05:26:21] -rwx------ 1 boinc boinc     37140 Jun  3 14:16 runpilot2-wrapper.sh
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc       100 Jun  4 04:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:26:21] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 04:01 run_atlas
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc       105 Jun  4 04:01 job.xml
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc      6664 Jun  4 04:01 init_data.xml
[2025-06-04 05:26:21] -rw-r--r-- 2 boinc boinc 214710047 Jun  4 04:01 EVNT.45006593._001282.pool.root.1
[2025-06-04 05:26:21] -rw-r--r-- 2 boinc boinc     15093 Jun  4 04:01 start_atlas.sh
[2025-06-04 05:26:21] drwxrwx--x 2 boinc boinc      4096 Jun  4 04:01 shared
[2025-06-04 05:26:21] -rw-r--r-- 2 boinc boinc    508883 Jun  4 04:01 input.tar.gz
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc         0 Jun  4 04:01 boinc_lockfile
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc      2525 Jun  4 04:01 pandaJob.out
[2025-06-04 05:26:21] -rw------- 1 boinc boinc    986077 Jun  4 04:04 agis_schedconf.cvmfs.json
[2025-06-04 05:26:21] -rw------- 1 boinc boinc   1603667 Jun  4 04:04 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:26:21] drwx------ 4 boinc boinc      4096 Jun  4 04:04 pilot3
[2025-06-04 05:26:21] -rw------- 1 boinc boinc 178217477 Jun  4 05:24 HITS.45006595._031848.pool.root.1
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc       529 Jun  4 05:24 boinc_task_state.xml
[2025-06-04 05:26:21] -rw------- 1 boinc boinc      1021 Jun  4 05:25 memory_monitor_summary.json
[2025-06-04 05:26:21] -rw------- 1 boinc boinc    354842 Jun  4 05:25 log.45006595._031848.job.log.tgz.1
[2025-06-04 05:26:21] -rw------- 1 boinc boinc        95 Jun  4 05:25 pilot_heartbeat.json
[2025-06-04 05:26:21] -rw------- 1 boinc boinc      7695 Jun  4 05:26 heartbeat.json
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc        26 Jun  4 05:26 wrapper_checkpoint.txt
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc      8192 Jun  4 05:26 boinc_mmap_file
[2025-06-04 05:26:21] -rw------- 1 boinc boinc      4665 Jun  4 05:26 pilotlog.txt
[2025-06-04 05:26:21] -rw------- 1 boinc boinc    442439 Jun  4 05:26 log.45006595._031848.job.log.1
[2025-06-04 05:26:21] -rw------- 1 boinc boinc       357 Jun  4 05:26 output.list
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc       620 Jun  4 05:26 runtime_log
[2025-06-04 05:26:21] -rw------- 1 boinc boinc    819200 Jun  4 05:26 result.tar.gz
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc      8720 Jun  4 05:26 runtime_log.err
[2025-06-04 05:26:21] -rw------- 1 boinc boinc       663 Jun  4 05:26 2q9MDmOkfg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8zjKDmwVhtWn.diag
[2025-06-04 05:26:21] -rw-r--r-- 1 boinc boinc     22509 Jun  4 05:26 stderr.txt
[2025-06-04 05:26:21] HITS file was successfully produced:
[2025-06-04 05:26:21] -rw------- 1 boinc boinc 178217477 Jun  4 05:24 shared/HITS.pool.root.1
[2025-06-04 05:26:21]  *** Contents of shared directory: ***
[2025-06-04 05:26:21] total 385048
[2025-06-04 05:26:21] -rw-r--r-- 2 boinc boinc 214710047 Jun  4 04:01 ATLAS.root_0
[2025-06-04 05:26:21] -rw-r--r-- 2 boinc boinc     15093 Jun  4 04:01 start_atlas.sh
[2025-06-04 05:26:21] -rw-r--r-- 2 boinc boinc    508883 Jun  4 04:01 input.tar.gz
[2025-06-04 05:26:21] -rw------- 1 boinc boinc 178217477 Jun  4 05:24 HITS.pool.root.1
[2025-06-04 05:26:21] -rw------- 1 boinc boinc    819200 Jun  4 05:26 result.tar.gz
05:26:23 (685660): run_atlas exited; CPU time 34571.029295
05:26:23 (685660): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN