Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 19:01:04 (5400): Detected: vboxwrapper 26206
2025-06-05 19:01:04 (5400): Detected: BOINC client v8.0.2
2025-06-05 19:01:05 (5400): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-05 19:01:05 (5400): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 19:01:06 (5400): Create VM. (boinc_41ecd590224ccf04, slot#0)
2025-06-05 19:01:06 (5400): Setting Memory Size for VM. (4400MB)
2025-06-05 19:01:06 (5400): Setting CPU Count for VM. (4)
2025-06-05 19:01:07 (5400): Setting Chipset Options for VM.
2025-06-05 19:01:07 (5400): Setting Graphics Controller Options for VM.
2025-06-05 19:01:07 (5400): Setting Boot Options for VM.
2025-06-05 19:01:07 (5400): Setting Network Configuration for NAT.
2025-06-05 19:01:08 (5400): Enabling VM Network Access.
2025-06-05 19:01:08 (5400): Disabling USB Support for VM.
2025-06-05 19:01:08 (5400): Disabling COM Port Support for VM.
2025-06-05 19:01:08 (5400): Disabling LPT Port Support for VM.
2025-06-05 19:01:09 (5400): Disabling Audio Support for VM.
2025-06-05 19:01:09 (5400): Disabling Clipboard Support for VM.
2025-06-05 19:01:09 (5400): Disabling Drag and Drop Support for VM.
2025-06-05 19:01:09 (5400): Adding storage controller(s) to VM.
2025-06-05 19:01:10 (5400): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 19:01:10 (5400): Adding VirtualBox Guest Additions to VM.
2025-06-05 19:01:10 (5400): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 19:01:11 (5400): forwarding host port 56371 to guest port 80
2025-06-05 19:01:11 (5400): Enabling remote desktop for VM.
2025-06-05 19:01:11 (5400): Required extension pack not installed, remote desktop not enabled.
2025-06-05 19:01:11 (5400): Enabling shared directory for VM.
2025-06-05 19:01:12 (5400): Starting VM using VBoxManage interface. (boinc_41ecd590224ccf04, slot#0)
2025-06-05 19:01:17 (5400): Successfully started VM. (PID = '7720')
2025-06-05 19:01:17 (5400): Reporting VM Process ID to BOINC.
2025-06-05 19:01:17 (5400): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-05 19:01:17 (5400): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 19:01:17 (5400): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-05 19:01:17 (5400): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 19:01:17 (5400): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 19:01:17 (5400): Detected: Web Application Enabled (http://localhost:56371)
2025-06-05 19:01:17 (5400): Preference change detected
2025-06-05 19:01:17 (5400): Setting CPU throttle for VM. (100%)
2025-06-05 19:01:18 (5400): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 19:01:19 (5400): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 19:01:19 (5400): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 19:01:21 (5400): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 19:01:21 (5400): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 19:01:21 (5400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 19:01:25 (5400): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 19:01:25 (5400): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 19:01:29 (5400): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 19:01:29 (5400): Guest Log: 00:00:00.000087 main     Log opened 2025-06-05T19:01:27.001513000Z
2025-06-05 19:01:29 (5400): Guest Log: 00:00:00.000153 main     OS Product: Linux
2025-06-05 19:01:29 (5400): Guest Log: 00:00:00.000176 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 19:01:29 (5400): Guest Log: 00:00:00.000202 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 19:01:29 (5400): Guest Log: 00:00:00.000222 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 19:01:29 (5400): Guest Log: 00:00:00.000223 main     Process ID: 1296
2025-06-05 19:01:29 (5400): Guest Log: 00:00:00.000223 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 19:01:29 (5400): Guest Log: 00:00:00.000732 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 19:01:29 (5400): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 19:01:29 (5400): Guest Log: [INFO] Mounting shared directory
2025-06-05 19:01:29 (5400): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 19:01:30 (5400): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 19:01:30 (5400): Guest Log: [INFO] Detected branch: prod
2025-06-05 19:01:30 (5400): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 19:01:30 (5400): Guest Log: Copying input files
2025-06-05 19:01:31 (5400): Guest Log: Copied input files into RunAtlas.
2025-06-05 19:01:31 (5400): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-05 19:01:31 (5400): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-05 19:01:31 (5400): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-05 19:01:31 (5400): Guest Log: Further information can be found at the LHC@home message board.
2025-06-05 19:01:38 (5400): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 19:01:38 (5400): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 19:01:38 (5400): Guest Log: 2.6.3.0 1571 0 30012 146826 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-05 19:01:38 (5400): Guest Log: copied the webapp to /var/www
2025-06-05 19:01:38 (5400): Guest Log: ATHENA_PROC_NUMBER=4
2025-06-05 19:01:38 (5400): Guest Log: ATHENA_CORE_NUMBER=4
2025-06-05 19:01:38 (5400): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 19:01:38 (5400): Guest Log:  *** Starting ATLAS job. (PandaID=6677675939 taskID=45006595) ***
2025-06-05 19:01:39 (5400): Guest Log: 00:00:10.002044 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 086 387 000ns (GuestNow=1 749 142 898 916 524 000 ns GuestLast=1 749 150 087 002 911 000 ns fSetTimeLastLoop=true )
2025-06-05 19:11:09 (5400): Guest Log:  *** Job finished ***
2025-06-05 19:11:09 (5400): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:10:57,243 | INFO     | [job] control thread has finished
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:10:57,247 | INFO     | [data] copytool_in thread has finished
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:01,266 | INFO     | [data] queue_monitor thread has finished
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:02,189 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139704836798272)>', '<ExcThread(monitor, started 139703718233856)>']
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:02,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:02,928 | INFO     | [monitor] control thread has ended
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,210 | INFO     | all workflow threads have been joined
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,210 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,210 | INFO     | traces error code: 0
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,210 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,277 [wrapper] ==== pilot stdout END ====
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,281 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,284 [wrapper] pilotpid: 5867
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,287 [wrapper] Pilot exit status: 0
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,347 [wrapper] pandaids: 6677675939
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,379 [wrapper] cleanup supervisor_pilot  5873 5868
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,385 [wrapper] Test setup, not cleaning
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,388 [wrapper] apfmon messages muted
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,393 [wrapper] ==== wrapper stdout END ====
2025-06-05 19:11:09 (5400): Guest Log: 2025-06-05 17:11:07,396 [wrapper] ==== wrapper stderr END ====
2025-06-05 19:11:09 (5400): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 19:11:09 (5400): Guest Log:     "exeErrorCode": 65,
2025-06-05 19:11:09 (5400): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"ServiceManager                                               0   FATAL No Service factory for PartPropSvc available.\"; Possible memory leak: 'pss' slope: 5367.78 KB/s",
2025-06-05 19:11:09 (5400): Guest Log:     "pilotErrorCode": 1305,
2025-06-05 19:11:09 (5400): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"ServiceManager                                               0   FATAL No Service f",
2025-06-05 19:11:09 (5400): Guest Log:  *** Listing of results directory ***
2025-06-05 19:11:09 (5400): Guest Log: total 4056
2025-06-05 19:11:09 (5400): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Jun  3 14:52 pilot3.tar.gz
2025-06-05 19:11:09 (5400): Guest Log: -rwx------. 1 atlas atlas   37140 Jun  3 14:56 runpilot2-wrapper.sh
2025-06-05 19:11:09 (5400): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Jun  3 14:56 queuedata.json
2025-06-05 19:11:09 (5400): Guest Log: -rwxr-xr-x. 1 atlas atlas    8965 Jun  5 17:01 init_data.xml
2025-06-05 19:11:09 (5400): Guest Log: -rwxr-xr-x. 1 atlas atlas  508875 Jun  5 17:01 input.tar.gz
2025-06-05 19:11:09 (5400): Guest Log: -rwxr-xr-x. 1 atlas atlas   15093 Jun  5 17:01 start_atlas.sh
2025-06-05 19:11:09 (5400): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jun  5 17:01 EVNT.45006593._001455.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 19:11:09 (5400): Guest Log: -rw-r--r--. 1 atlas atlas    2525 Jun  5 17:01 pandaJob.out
2025-06-05 19:11:09 (5400): Guest Log: -rw-------. 1 atlas atlas  983229 Jun  5 17:02 agis_schedconf.cvmfs.json
2025-06-05 19:11:09 (5400): Guest Log: -rw-------. 1 atlas atlas 1598969 Jun  5 17:02 agis_ddmendpoints.agis.ALL.json
2025-06-05 19:11:09 (5400): Guest Log: drwx------. 4 atlas atlas    4096 Jun  5 17:02 pilot3
2025-06-05 19:11:09 (5400): Guest Log: -rw-------. 1 atlas atlas    1023 Jun  5 17:08 memory_monitor_summary.json
2025-06-05 19:11:09 (5400): Guest Log: -rw-------. 1 atlas atlas   88335 Jun  5 17:08 log.45006595._036206.job.log.tgz.1
2025-06-05 19:11:09 (5400): Guest Log: -rw-------. 1 atlas atlas      95 Jun  5 17:10 pilot_heartbeat.json
2025-06-05 19:11:09 (5400): Guest Log: -rw-------. 1 atlas atlas   12701 Jun  5 17:10 heartbeat.json
2025-06-05 19:11:09 (5400): Guest Log: -rw-------. 1 atlas atlas    4536 Jun  5 17:11 pilotlog.txt
2025-06-05 19:11:09 (5400): Guest Log: -rw-------. 1 atlas atlas  100685 Jun  5 17:11 log.45006595._036206.job.log.1
2025-06-05 19:11:09 (5400): Guest Log: -rw-------. 1 atlas atlas     188 Jun  5 17:11 output.list
2025-06-05 19:11:09 (5400): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jun  5 17:11 runtime_log
2025-06-05 19:11:09 (5400): Guest Log: -rw-------. 1 atlas atlas  215040 Jun  5 17:11 result.tar.gz
2025-06-05 19:11:09 (5400): Guest Log: -rw-r--r--. 1 atlas atlas    8445 Jun  5 17:11 runtime_log.err
2025-06-05 19:11:09 (5400): Guest Log: -rw-------. 1 atlas atlas     644 Jun  5 17:11 NWqNDmLFig7n9Rq4apOajLDm4fhM0noT9bVof3QYDme0YKDmwDaflm.diag
2025-06-05 19:11:09 (5400): Guest Log: Looking for outputfile HITS.45006595._036206.pool.root.1
2025-06-05 19:11:09 (5400): Guest Log: No HITS file was produced
2025-06-05 19:11:09 (5400): Guest Log: Successfully finished the ATLAS job!
2025-06-05 19:11:09 (5400): Guest Log: Copying the results back to the shared directory!
2025-06-05 19:11:09 (5400): Guest Log:  *** Contents of shared directory: ***
2025-06-05 19:11:09 (5400): Guest Log: total 210348
2025-06-05 19:11:09 (5400): Guest Log: -rwxrwxrwx. 1 root root 214638047 Jun  5 17:01 ATLAS.root_0
2025-06-05 19:11:09 (5400): Guest Log: -rwxrwxrwx. 1 root root      8965 Jun  5 17:01 init_data.xml
2025-06-05 19:11:09 (5400): Guest Log: -rwxrwxrwx. 1 root root    508875 Jun  3 17:37 input.tar.gz
2025-06-05 19:11:09 (5400): Guest Log: -rwxrwxrwx. 1 root root    215040 Jun  5 17:11 result.tar.gz
2025-06-05 19:11:09 (5400): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 17:37 start_atlas.sh
2025-06-05 19:11:09 (5400): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 19:11:09 (5400): VM Completion File Detected.
2025-06-05 19:11:09 (5400): Powering off VM.
2025-06-05 19:11:09 (5400): Successfully stopped VM.
2025-06-05 19:11:09 (5400): Deregistering VM. (boinc_41ecd590224ccf04, slot#0)
2025-06-05 19:11:09 (5400): Removing network bandwidth throttle group from VM.
2025-06-05 19:11:09 (5400): Removing VM from VirtualBox.
19:11:15 (5400): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN