Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:40:05 (26951): wrapper (7.7.26015): starting
10:40:05 (26951): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 10:40:05] Arguments: --nthreads 8
[2025-06-04 10:40:05] Threads: 8
[2025-06-04 10:40:05] Checking for CVMFS
[2025-06-04 10:40:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:40:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:40:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:40:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:40:07] 2.11.2.0 3966 32968 94228 146773 2 69 17043711 25165824 3906 130560 0 18023939 99.786 20009233 2139 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 10:40:07] CVMFS is ok
[2025-06-04 10:40:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:40:07] Checking for apptainer binary...
[2025-06-04 10:40:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:40:07] Running /usr/bin/apptainer --version
[2025-06-04 10:40:07] apptainer version 1.3.2-1.el7
[2025-06-04 10:40:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:51:24] cg-vwn439.simple-grid.lan
[2025-06-04 10:51:24] apptainer works
[2025-06-04 10:51:24] Set ATHENA_PROC_NUMBER=8
[2025-06-04 10:51:24] Set ATHENA_CORE_NUMBER=8
[2025-06-04 10:51:25] Starting ATLAS job with PandaID=6677676529
[2025-06-04 10:51:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 15:10:40]  *** The last 200 lines of the pilot log: ***
[2025-06-04 15:10:40] 2025-06-04 13:01:37,804 | INFO     | intersect: -11858858126.587986
[2025-06-04 15:10:40] 2025-06-04 13:01:37,805 | INFO     | chi2: 0.743542457709292
[2025-06-04 15:10:40] 2025-06-04 13:01:37,805 | INFO     | current chi2=0.743542457709292 (change=85.82590393916205 %)
[2025-06-04 15:10:40] 2025-06-04 13:01:37,806 | INFO     | sum of square deviations: 3531973200.0
[2025-06-04 15:10:40] 2025-06-04 13:01:37,807 | INFO     | sum of deviations: -505944980.0000014
[2025-06-04 15:10:40] 2025-06-04 13:01:37,808 | INFO     | mean x: 1749035170.0
[2025-06-04 15:10:40] 2025-06-04 13:01:37,808 | INFO     | mean y: 2498901.8755555553
[2025-06-04 15:10:40] 2025-06-04 13:01:37,808 | INFO     | -- intersect: 253043148.39049202
[2025-06-04 15:10:40] 2025-06-04 13:01:37,808 | INFO     | intersect: 253043148.39049202
[2025-06-04 15:10:40] 2025-06-04 13:01:37,808 | INFO     | chi2: 0.04647894525066878
[2025-06-04 15:10:40] 2025-06-04 13:01:37,808 | INFO     | current chi2=0.04647894525066878 (change=93.74898571443234 %)
[2025-06-04 15:10:40] 2025-06-04 13:01:37,809 | INFO     | sum of square deviations: 3301699115.0
[2025-06-04 15:10:40] 2025-06-04 13:01:37,811 | INFO     | sum of deviations: 3980405367.000001
[2025-06-04 15:10:40] 2025-06-04 13:01:37,811 | INFO     | mean x: 1749035322.5
[2025-06-04 15:10:40] 2025-06-04 13:01:37,811 | INFO     | mean y: 2495902.3363636364
[2025-06-04 15:10:40] 2025-06-04 13:01:37,811 | INFO     | -- intersect: -2106075879.1209476
[2025-06-04 15:10:40] 2025-06-04 13:01:37,811 | INFO     | intersect: -2106075879.1209476
[2025-06-04 15:10:40] 2025-06-04 13:01:37,812 | INFO     | chi2: 0.02159178100225051
[2025-06-04 15:10:40] 2025-06-04 13:01:37,812 | INFO     | current chi2=0.02159178100225051 (change=53.54502799966222 %)
[2025-06-04 15:10:40] 2025-06-04 13:01:37,812 | INFO     | sum of square deviations: 3081657780.0
[2025-06-04 15:10:40] 2025-06-04 13:01:37,814 | INFO     | sum of deviations: 6068304888.000001
[2025-06-04 15:10:40] 2025-06-04 13:01:37,814 | INFO     | mean x: 1749035475.0
[2025-06-04 15:10:40] 2025-06-04 13:01:37,814 | INFO     | mean y: 2494490.2186046513
[2025-06-04 15:10:40] 2025-06-04 13:01:37,815 | INFO     | -- intersect: -3441651901.0876694
[2025-06-04 15:10:40] 2025-06-04 13:01:37,815 | INFO     | intersect: -3441651901.0876694
[2025-06-04 15:10:40] 2025-06-04 13:01:37,815 | INFO     | chi2: 0.0015637691797238556
[2025-06-04 15:10:40] 2025-06-04 13:01:37,815 | INFO     | current chi2=0.0015637691797238556 (change=92.75757206151329 %)
[2025-06-04 15:10:40] 2025-06-04 13:01:37,816 | INFO     | sum of square deviations: 2871616632.5
[2025-06-04 15:10:40] 2025-06-04 13:01:37,817 | INFO     | sum of deviations: 4899204660.5
[2025-06-04 15:10:40] 2025-06-04 13:01:37,818 | INFO     | mean x: 1749035627.5
[2025-06-04 15:10:40] 2025-06-04 13:01:37,818 | INFO     | mean y: 2495337.3857142855
[2025-06-04 15:10:40] 2025-06-04 13:01:37,818 | INFO     | -- intersect: -2981497512.024884
[2025-06-04 15:10:40] 2025-06-04 13:01:37,818 | INFO     | intersect: -2981497512.024884
[2025-06-04 15:10:40] 2025-06-04 13:01:37,819 | INFO     | chi2: 0.0010670702639906761
[2025-06-04 15:10:40] 2025-06-04 13:01:37,819 | INFO     | current chi2=0.0010670702639906761 (change=31.762930371916593 %)
[2025-06-04 15:10:40] 2025-06-04 13:01:37,819 | INFO     | sum of square deviations: 2671343110.0
[2025-06-04 15:10:40] 2025-06-04 13:01:37,821 | INFO     | sum of deviations: 4132310312.0
[2025-06-04 15:10:40] 2025-06-04 13:01:37,821 | INFO     | mean x: 1749035780.0
[2025-06-04 15:10:40] 2025-06-04 13:01:37,821 | INFO     | mean y: 2495921.1219512196
[2025-06-04 15:10:40] 2025-06-04 13:01:37,821 | INFO     | -- intersect: -2703093848.5692077
[2025-06-04 15:10:40] 2025-06-04 13:01:37,822 | INFO     | intersect: -2703093848.5692077
[2025-06-04 15:10:40] 2025-06-04 13:01:37,822 | INFO     | chi2: 0.0009092141997501469
[2025-06-04 15:10:40] 2025-06-04 13:01:37,823 | INFO     | current chi2=0.0009092141997501469 (change=14.793408603682035 %)
[2025-06-04 15:10:40] 2025-06-04 13:01:37,823 | INFO     | left removable region: 60
[2025-06-04 15:10:40] 2025-06-04 13:01:37,823 | INFO     | sum of square deviations: 1496660620.0
[2025-06-04 15:10:40] 2025-06-04 13:01:37,824 | INFO     | sum of deviations: 770041368.9999998
[2025-06-04 15:10:40] 2025-06-04 13:01:37,824 | INFO     | mean x: 1749036512.0
[2025-06-04 15:10:40] 2025-06-04 13:01:37,824 | INFO     | mean y: 2498682.0118343197
[2025-06-04 15:10:40] 2025-06-04 13:01:37,824 | INFO     | -- intersect: -897391681.9983208
[2025-06-04 15:10:40] 2025-06-04 13:01:37,825 | INFO     | intersect: -897391681.9983208
[2025-06-04 15:10:40] 2025-06-04 13:01:37,825 | INFO     | chi2: 6.837834922024661e-05
[2025-06-04 15:10:40] 2025-06-04 13:01:37,825 | INFO     | -- intersect: -897391681.9983208
[2025-06-04 15:10:40] 2025-06-04 13:01:37,825 | INFO     | current memory leak: 0.51 B/s (using 169 data points, chi2=0.00)
[2025-06-04 15:10:40] 2025-06-04 13:01:37,826 | INFO     | ..............................
[2025-06-04 15:10:40] 2025-06-04 13:01:37,826 | INFO     | . Timing measurements:
[2025-06-04 15:10:40] 2025-06-04 13:01:37,826 | INFO     | . get job = 0 s
[2025-06-04 15:10:40] 2025-06-04 13:01:37,826 | INFO     | . initial setup = 3 s
[2025-06-04 15:10:40] 2025-06-04 13:01:37,827 | INFO     | . payload setup = 156 s
[2025-06-04 15:10:40] 2025-06-04 13:01:37,827 | INFO     | . stage-in = 0 s
[2025-06-04 15:10:40] 2025-06-04 13:01:37,827 | INFO     | . payload execution = 14464 s
[2025-06-04 15:10:40] 2025-06-04 13:01:37,827 | INFO     | . stage-out = 2 s
[2025-06-04 15:10:40] 2025-06-04 13:01:37,827 | INFO     | . log creation = 0 s
[2025-06-04 15:10:40] 2025-06-04 13:01:37,827 | INFO     | ..............................
[2025-06-04 15:10:40] 2025-06-04 13:01:38,076 | INFO     | 
[2025-06-04 15:10:40] 2025-06-04 13:01:38,076 | INFO     | job summary report
[2025-06-04 15:10:40] 2025-06-04 13:01:38,076 | INFO     | --------------------------------------------------
[2025-06-04 15:10:40] 2025-06-04 13:01:38,076 | INFO     | PanDA job id: 6677676529
[2025-06-04 15:10:40] 2025-06-04 13:01:38,077 | INFO     | task id: 45006595
[2025-06-04 15:10:40] 2025-06-04 13:01:38,077 | INFO     | errors: (none)
[2025-06-04 15:10:40] 2025-06-04 13:01:38,077 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 15:10:40] 2025-06-04 13:01:38,077 | INFO     | pilot state: finished 
[2025-06-04 15:10:40] 2025-06-04 13:01:38,077 | INFO     | transexitcode: 0
[2025-06-04 15:10:40] 2025-06-04 13:01:38,077 | INFO     | exeerrorcode: 0
[2025-06-04 15:10:40] 2025-06-04 13:01:38,077 | INFO     | exeerrordiag: 
[2025-06-04 15:10:40] 2025-06-04 13:01:38,077 | INFO     | exitcode: 0
[2025-06-04 15:10:40] 2025-06-04 13:01:38,077 | INFO     | exitmsg: OK
[2025-06-04 15:10:40] 2025-06-04 13:01:38,077 | INFO     | cpuconsumptiontime: 52938 s
[2025-06-04 15:10:40] 2025-06-04 13:01:38,077 | INFO     | nevents: 400
[2025-06-04 15:10:40] 2025-06-04 13:01:38,078 | INFO     | neventsw: 0
[2025-06-04 15:10:40] 2025-06-04 13:01:38,078 | INFO     | pid: 19149
[2025-06-04 15:10:40] 2025-06-04 13:01:38,078 | INFO     | pgrp: 19149
[2025-06-04 15:10:40] 2025-06-04 13:01:38,078 | INFO     | corecount: 8
[2025-06-04 15:10:40] 2025-06-04 13:01:38,078 | INFO     | event service: False
[2025-06-04 15:10:40] 2025-06-04 13:01:38,078 | INFO     | sizes: {0: 2404354, 1: 2405039, 2: 2405238, 13: 2405238, 23: 2405294, 34: 2405322, 45: 2405478, 56: 2405506, 66: 2405534, 77: 2405562, 86: 2405824, 88: 2406132, 14
[2025-06-04 15:10:40] 2025-06-04 13:01:38,078 | INFO     | --------------------------------------------------
[2025-06-04 15:10:40] 2025-06-04 13:01:38,078 | INFO     | 
[2025-06-04 15:10:40] 2025-06-04 13:01:38,078 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-04 15:10:40] 2025-06-04 13:01:38,335 | INFO     | PID=6649 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 15:10:40] 2025-06-04 13:01:38,335 | INFO     | .. there are 9 such processes running
[2025-06-04 15:10:40] 2025-06-04 13:01:38,646 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,647 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,647 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,647 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,647 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,647 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,647 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,648 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,648 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,648 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,648 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,648 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,648 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,648 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,648 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,648 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,648 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,649 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 15:10:40] 2025-06-04 13:01:38,649 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,649 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 15:10:40] 2025-06-04 13:01:38,649 | INFO     | job 6677676529 has completed (purged errors)
[2025-06-04 15:10:40] 2025-06-04 13:01:38,649 | INFO     | overall cleanup function is called
[2025-06-04 15:10:40] 2025-06-04 13:01:39,658 | INFO     | --- collectZombieJob: --- 10, [19149]
[2025-06-04 15:10:40] 2025-06-04 13:01:39,658 | INFO     | zombie collector waiting for pid 19149
[2025-06-04 15:10:40] 2025-06-04 13:01:39,658 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 15:10:40] 2025-06-04 13:01:39,659 | INFO     | collected zombie processes
[2025-06-04 15:10:40] 2025-06-04 13:01:39,659 | INFO     | will attempt to kill all subprocesses of pid=19149
[2025-06-04 15:10:40] 2025-06-04 13:01:39,788 | INFO     | process IDs to be killed: [19149] (in reverse order)
[2025-06-04 15:10:40] 2025-06-04 13:01:40,618 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 15:10:40] 2025-06-04 13:01:40,618 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 15:10:40] 2025-06-04 13:01:40,621 | INFO     | did not find any defunct processes belonging to 19149
[2025-06-04 15:10:40] 2025-06-04 13:01:40,624 | INFO     | did not find any defunct processes belonging to 19149
[2025-06-04 15:10:40] 2025-06-04 13:01:40,625 | INFO     | ready for new job
[2025-06-04 15:10:40] 2025-06-04 13:01:40,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 15:10:40] 2025-06-04 13:01:40,627 | INFO     | **************************************
[2025-06-04 15:10:40] 2025-06-04 13:01:40,627 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 15:10:40] 2025-06-04 13:01:40,628 | INFO     | **************************************
[2025-06-04 15:10:40] 2025-06-04 13:01:40,628 | INFO     | 
[2025-06-04 15:10:40] 2025-06-04 13:01:40,628 | INFO     | pilot is running in a VM
[2025-06-04 15:10:40] 2025-06-04 13:01:40,628 | INFO     | architecture information:
[2025-06-04 15:10:40] 2025-06-04 13:01:40,642 | INFO     | executing command: cat /etc/os-release
[2025-06-04 15:10:40] 2025-06-04 13:01:40,945 | INFO     | cat /etc/os-release:
[2025-06-04 15:10:40] NAME="CentOS Linux"
[2025-06-04 15:10:40] VERSION="7 (Core)"
[2025-06-04 15:10:40] ID="centos"
[2025-06-04 15:10:40] ID_LIKE="rhel fedora"
[2025-06-04 15:10:40] VERSION_ID="7"
[2025-06-04 15:10:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 15:10:40] ANSI_COLOR="0;31"
[2025-06-04 15:10:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 15:10:40] HOME_URL="https://www.centos.org/"
[2025-06-04 15:10:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 15:10:40] 
[2025-06-04 15:10:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 15:10:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 15:10:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 15:10:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 15:10:40] 
[2025-06-04 15:10:40] 2025-06-04 13:01:40,945 | INFO     | **************************************
[2025-06-04 15:10:40] 2025-06-04 13:01:41,449 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-04 15:10:40] 2025-06-04 13:01:41,597 | INFO     | sufficient remaining disk space (496217620480 B)
[2025-06-04 15:10:40] 2025-06-04 13:01:41,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 15:10:40] 2025-06-04 13:01:41,597 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 15:10:40] 2025-06-04 13:01:41,597 | INFO     | update_server=False
[2025-06-04 15:10:40] 2025-06-04 13:01:41,598 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 15:10:40] 2025-06-04 13:01:41,600 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 15:10:40] 2025-06-04 13:01:41,649 | INFO     | all job control threads have been joined
[2025-06-04 15:10:40] 2025-06-04 13:01:41,986 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 15:10:40] 2025-06-04 13:01:41,986 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 15:10:40] 2025-06-04 13:01:41,987 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:10:40] 2025-06-04 13:01:41,987 | INFO     | will abort loop
[2025-06-04 15:10:40] 2025-06-04 13:01:42,269 | INFO     | all data control threads have been joined
[2025-06-04 15:10:40] 2025-06-04 13:01:42,352 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 15:10:40] 2025-06-04 13:01:42,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 15:10:40] 2025-06-04 13:01:42,353 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 15:10:40] 2025-06-04 13:01:42,423 | INFO     | all payload control threads have been joined
[2025-06-04 15:10:40] 2025-06-04 13:01:42,603 | INFO     | [job] retrieve thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:42,643 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:42,655 | INFO     | [job] control thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:42,960 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:10:40] 2025-06-04 13:01:42,993 | INFO     | [job] job monitor thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:43,002 | INFO     | [payload] validate_post thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:43,274 | INFO     | [data] control thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:43,359 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:43,429 | INFO     | [payload] control thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:43,562 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:43,576 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:43,585 | INFO     | [job] validate thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:43,606 | INFO     | [data] copytool_out thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:43,864 | INFO     | [data] copytool_in thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:43,907 | INFO     | [payload] failed_post thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:43,966 | INFO     | [job] queue monitor thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:44,461 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 15:10:40] 2025-06-04 13:01:48,469 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 15:10:40] 2025-06-04 13:01:49,326 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139881185449792)>', '<ExcThread(monitor, started 139880751417088)>']
[2025-06-04 15:10:40] 2025-06-04 13:01:49,395 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 15:10:40] 2025-06-04 13:01:49,395 | INFO     | [monitor] control thread has ended
[2025-06-04 15:10:40] 2025-06-04 13:01:54,352 | INFO     | all workflow threads have been joined
[2025-06-04 15:10:40] 2025-06-04 13:01:54,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 15:10:40] 2025-06-04 13:01:54,353 | INFO     | traces error code: 0
[2025-06-04 15:10:40] 2025-06-04 13:01:54,353 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 15:10:40] 2025-06-04 13:01:54,747 [wrapper] ==== pilot stdout END ====
[2025-06-04 15:10:40] 2025-06-04 13:01:54,844 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 15:10:40] 2025-06-04 13:01:54,900 [wrapper] pilotpid: 6649
[2025-06-04 15:10:40] 2025-06-04 13:01:54,943 [wrapper] Pilot exit status: 0
[2025-06-04 15:10:40] 2025-06-04 13:01:55,250 [wrapper] pandaids: 6677676529
[2025-06-04 15:10:40] 2025-06-04 13:01:55,841 [wrapper] cleanup supervisor_pilot  5008 6650
[2025-06-04 15:10:40] 2025-06-04 13:01:55,962 [wrapper] Test setup, not cleaning
[2025-06-04 15:10:40] 2025-06-04 13:01:56,080 [wrapper] apfmon messages muted
[2025-06-04 15:10:40] 2025-06-04 13:01:56,194 [wrapper] ==== wrapper stdout END ====
[2025-06-04 15:10:40] 2025-06-04 13:01:56,314 [wrapper] ==== wrapper stderr END ====
[2025-06-04 15:10:40]  *** Error codes and diagnostics ***
[2025-06-04 15:10:40]     "exeErrorCode": 0,
[2025-06-04 15:10:40]     "exeErrorDiag": "",
[2025-06-04 15:10:40]     "pilotErrorCode": 0,
[2025-06-04 15:10:40]     "pilotErrorDiag": "",
[2025-06-04 15:10:40]  *** Listing of results directory ***
[2025-06-04 15:10:40] total 400724
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc    495897 Jun  3 16:52 pilot3.tar.gz
[2025-06-04 15:10:40] -rwx------. 1 boinc boinc     37140 Jun  3 17:15 runpilot2-wrapper.sh
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc      5111 Jun  3 17:15 queuedata.json
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc       100 Jun  4 10:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 15:10:40] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 10:40 run_atlas
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc       105 Jun  4 10:40 job.xml
[2025-06-04 15:10:40] -rw-r--r--. 2 boinc boinc 218292530 Jun  4 10:40 EVNT.45006593._001473.pool.root.1
[2025-06-04 15:10:40] drwxrwx--x. 2 boinc boinc        68 Jun  4 10:40 shared
[2025-06-04 15:10:40] -rw-r--r--. 2 boinc boinc    508874 Jun  4 10:40 input.tar.gz
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc      6392 Jun  4 10:40 init_data.xml
[2025-06-04 15:10:40] -rw-r--r--. 2 boinc boinc     15093 Jun  4 10:40 start_atlas.sh
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc         0 Jun  4 10:40 boinc_lockfile
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc      2524 Jun  4 10:51 pandaJob.out
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc    986774 Jun  4 10:54 agis_schedconf.cvmfs.json
[2025-06-04 15:10:40] drwx------. 4 boinc boinc      4096 Jun  4 10:54 pilot3
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc 184926238 Jun  4 15:00 HITS.45006595._036653.pool.root.1
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc       531 Jun  4 15:00 boinc_task_state.xml
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc      1017 Jun  4 15:00 memory_monitor_summary.json
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc   1598969 Jun  4 15:00 agis_ddmendpoints.agis.ALL.json
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc    378593 Jun  4 15:00 log.45006595._036653.job.log.tgz.1
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc        95 Jun  4 15:01 pilot_heartbeat.json
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc      7687 Jun  4 15:01 heartbeat.json
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc      4602 Jun  4 15:01 pilotlog.txt
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc   1271576 Jun  4 15:01 log.45006595._036653.job.log.1
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc       357 Jun  4 15:01 output.list
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc       620 Jun  4 15:01 runtime_log
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc   1669120 Jun  4 15:01 result.tar.gz
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc       657 Jun  4 15:01 Wv6NDmHXig7n9Rq4apOajLDm4fhM0noT9bVof3QYDmD2YKDmjcMBEn.diag
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc      8659 Jun  4 15:01 runtime_log.err
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc      8192 Jun  4 15:10 boinc_mmap_file
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc        28 Jun  4 15:10 wrapper_checkpoint.txt
[2025-06-04 15:10:40] -rw-r--r--. 1 boinc boinc     20680 Jun  4 15:10 stderr.txt
[2025-06-04 15:10:40] HITS file was successfully produced:
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc 184926238 Jun  4 15:00 shared/HITS.pool.root.1
[2025-06-04 15:10:40]  *** Contents of shared directory: ***
[2025-06-04 15:10:40] total 395924
[2025-06-04 15:10:40] -rw-r--r--. 2 boinc boinc 218292530 Jun  4 10:40 ATLAS.root_0
[2025-06-04 15:10:40] -rw-r--r--. 2 boinc boinc    508874 Jun  4 10:40 input.tar.gz
[2025-06-04 15:10:40] -rw-r--r--. 2 boinc boinc     15093 Jun  4 10:40 start_atlas.sh
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc 184926238 Jun  4 15:00 HITS.pool.root.1
[2025-06-04 15:10:40] -rw-------. 1 boinc boinc   1669120 Jun  4 15:01 result.tar.gz
15:10:42 (26951): run_atlas exited; CPU time 53147.771676
15:10:42 (26951): called boinc_finish(0)

</stderr_txt>
]]>

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