Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
14:16:50 (1315490): wrapper (7.7.26015): starting
14:16:50 (1315490): wrapper: running run_atlas (--nthreads 2)
[2025-06-03 14:16:50] Arguments: --nthreads 2
[2025-06-03 14:16:50] Threads: 2
[2025-06-03 14:16:50] Checking for CVMFS
[2025-06-03 14:16:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 14:16:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 14:16:50] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 14:16:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 14:16:50] 2.12.7.0 979791 313 51420 146753 3 15 5172838 6144000 922 130560 0 437094 99.994 80637 3312 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-03 14:16:50] CVMFS is ok
[2025-06-03 14:16:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 14:16:50] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-03 14:16:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-03 14:16:50] Further information can be found at the LHC@home message board.
[2025-06-03 14:16:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 14:16:50] Checking for apptainer binary...
[2025-06-03 14:16:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 14:16:50] Running /usr/bin/apptainer --version
[2025-06-03 14:16:50] apptainer version 1.4.0
[2025-06-03 14:16:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 14:16:50] Aphrodite
[2025-06-03 14:16:50] apptainer works
[2025-06-03 14:16:50] Set ATHENA_PROC_NUMBER=2
[2025-06-03 14:16:50] Set ATHENA_CORE_NUMBER=2
[2025-06-03 14:16:50] Starting ATLAS job with PandaID=6677675851
[2025-06-03 14:16:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 15:53:06]  *** The last 200 lines of the pilot log: ***
[2025-06-03 15:53:06]  guid=e60c9f30-5b22-4634-b2b6-27aa932919ab
[2025-06-03 15:53:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 15:53:06]  is_altstaged=None
[2025-06-03 15:53:06]  is_tar=False
[2025-06-03 15:53:06]  lfn=log.45006595._036151.job.log.tgz.1
[2025-06-03 15:53:06]  mtime=0
[2025-06-03 15:53:06]  protocol_id=None
[2025-06-03 15:53:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 15:53:06]  replicas=None
[2025-06-03 15:53:06]  scope=mc23_13p6TeV
[2025-06-03 15:53:06]  status=None
[2025-06-03 15:53:06]  status_code=0
[2025-06-03 15:53:06]  storage_token=
[2025-06-03 15:53:06]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6677675851/log.45006595._036151.job.log.tgz.1
[2025-06-03 15:53:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/54/1c/log.45006595._036151.job.log.tgz.1
[2025-06-03 15:53:06]  workdir=None
[2025-06-03 15:53:06] ]
[2025-06-03 15:53:06] 2025-06-03 20:52:39,806 | INFO     | transferring file log.45006595._036151.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6677675851/log.45006595._036151.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-06-03 15:53:06] 2025-06-03 20:52:39,806 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6677675851/log.45006595._036151.job.log.tgz.1 /var/lib/boinc/slots/1/log.45006595._036151.job
[2025-06-03 15:53:06] 2025-06-03 20:52:39,814 | INFO     | adding to output.list: log.45006595._036151.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/54/1c/log.45006595._036151.job.log.tg
[2025-06-03 15:53:06] 2025-06-03 20:52:39,814 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 15:53:06] 2025-06-03 20:52:39,814 | INFO     | summary of transferred files:
[2025-06-03 15:53:06] 2025-06-03 20:52:39,814 | INFO     |  -- lfn=log.45006595._036151.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 15:53:06] 2025-06-03 20:52:39,814 | INFO     | stage-out finished correctly
[2025-06-03 15:53:06] 2025-06-03 20:52:43,037 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 15:53:06] 2025-06-03 20:52:44,317 | INFO     | job 6677675851 has state=finished
[2025-06-03 15:53:06] 2025-06-03 20:52:44,317 | INFO     | preparing for final server update for job 6677675851 in state='finished'
[2025-06-03 15:53:06] 2025-06-03 20:52:44,317 | INFO     | this job has now completed (state=finished)
[2025-06-03 15:53:06] 2025-06-03 20:52:44,317 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 15:53:06] 2025-06-03 20:52:44,318 | INFO     | log transfer has been attempted: DONE
[2025-06-03 15:53:06] 2025-06-03 20:52:44,318 | INFO     | job 6677675851 has finished - writing final server update
[2025-06-03 15:53:06] 2025-06-03 20:52:44,318 | INFO     | total number of processed events: 400 (read)
[2025-06-03 15:53:06] 2025-06-03 20:52:44,319 | INFO     | executing command: lscpu
[2025-06-03 15:53:06] 2025-06-03 20:52:44,330 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 15:53:06] 2025-06-03 20:52:45,897 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 15:53:06] 2025-06-03 20:52:45,898 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6677675851/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 15:53:06] 2025-06-03 20:52:45,898 | INFO     | extracted standard info from prmon json
[2025-06-03 15:53:06] 2025-06-03 20:52:45,898 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 15:53:06] 2025-06-03 20:52:45,898 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 15:53:06] 2025-06-03 20:52:45,898 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 15:53:06] 2025-06-03 20:52:45,898 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 15:53:06] 2025-06-03 20:52:45,899 | INFO     | fitting pss+swap vs Time
[2025-06-03 15:53:06] 2025-06-03 20:52:45,899 | INFO     | sum of square deviations: 204163828.0
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | sum of deviations: -10388427246.0
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | mean x: 1748981161.0
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | mean y: 2319776.747126437
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | -- intersect: 88995378555.37227
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | intersect: 88995378555.37227
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | chi2: 0.10469326280702948
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | -- intersect: 88995378555.37227
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | current memory leak: -50.88 B/s (using 87 data points, chi2=0.10)
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | ..............................
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | . Timing measurements:
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | . get job = 0 s
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | . initial setup = 2 s
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | . payload setup = 2 s
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | . stage-in = 0 s
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | . payload execution = 5727 s
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | . stage-out = 0 s
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | . log creation = 0 s
[2025-06-03 15:53:06] 2025-06-03 20:52:45,900 | INFO     | ..............................
[2025-06-03 15:53:06] 2025-06-03 20:52:46,161 | WARNING  | process 1325923 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 15:53:06] 2025-06-03 20:52:46,161 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6677675851/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 15:53:06] 2025-06-03 20:52:46,169 | INFO     | 
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | job summary report
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | --------------------------------------------------
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | PanDA job id: 6677675851
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | task id: 45006595
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | errors: (none)
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | pilot state: finished 
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | transexitcode: 0
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | exeerrorcode: 0
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | exeerrordiag: 
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | exitcode: 0
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | exitmsg: OK
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | cpuconsumptiontime: 11282 s
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | nevents: 400
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | neventsw: 0
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | pid: 1325923
[2025-06-03 15:53:06] 2025-06-03 20:52:46,170 | INFO     | pgrp: 1325923
[2025-06-03 15:53:06] 2025-06-03 20:52:46,171 | INFO     | corecount: 2
[2025-06-03 15:53:06] 2025-06-03 20:52:46,171 | INFO     | event service: False
[2025-06-03 15:53:06] 2025-06-03 20:52:46,171 | INFO     | sizes: {0: 2405178, 2: 2405384, 11: 2405412, 5730: 2432018, 5732: 2440959, 5735: 2441015, 5738: 2441313}
[2025-06-03 15:53:06] 2025-06-03 20:52:46,171 | INFO     | --------------------------------------------------
[2025-06-03 15:53:06] 2025-06-03 20:52:46,171 | INFO     | 
[2025-06-03 15:53:06] 2025-06-03 20:52:46,171 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-03 15:53:06] 2025-06-03 20:52:46,179 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,180 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,181 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,181 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,181 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,181 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 15:53:06] 2025-06-03 20:52:46,181 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,181 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 15:53:06] 2025-06-03 20:52:46,181 | INFO     | job 6677675851 has completed (purged errors)
[2025-06-03 15:53:06] 2025-06-03 20:52:46,181 | INFO     | overall cleanup function is called
[2025-06-03 15:53:06] 2025-06-03 20:52:46,254 | INFO     | number of running child processes to parent process 1325923: 1
[2025-06-03 15:53:06] 2025-06-03 20:52:46,254 | INFO     | maximum number of monitored processes: 6
[2025-06-03 15:53:06] 2025-06-03 20:52:46,254 | INFO     | aborting job monitoring since job object (job id=6677675851) has expired
[2025-06-03 15:53:06] 2025-06-03 20:52:47,188 | INFO     | --- collectZombieJob: --- 10, [1325923]
[2025-06-03 15:53:06] 2025-06-03 20:52:47,188 | INFO     | zombie collector waiting for pid 1325923
[2025-06-03 15:53:06] 2025-06-03 20:52:47,188 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 15:53:06] 2025-06-03 20:52:47,188 | INFO     | collected zombie processes
[2025-06-03 15:53:06] 2025-06-03 20:52:47,188 | INFO     | will attempt to kill all subprocesses of pid=1325923
[2025-06-03 15:53:06] 2025-06-03 20:52:47,274 | INFO     | process IDs to be killed: [1325923] (in reverse order)
[2025-06-03 15:53:06] 2025-06-03 20:52:47,306 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 15:53:06] 2025-06-03 20:52:47,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 15:53:06] 2025-06-03 20:52:47,310 | INFO     | did not find any defunct processes belonging to 1325923
[2025-06-03 15:53:06] 2025-06-03 20:52:47,313 | INFO     | did not find any defunct processes belonging to 1325923
[2025-06-03 15:53:06] 2025-06-03 20:52:47,313 | INFO     | ready for new job
[2025-06-03 15:53:06] 2025-06-03 20:52:47,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 15:53:06] 2025-06-03 20:52:47,313 | INFO     | **************************************
[2025-06-03 15:53:06] 2025-06-03 20:52:47,313 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 15:53:06] 2025-06-03 20:52:47,314 | INFO     | **************************************
[2025-06-03 15:53:06] 2025-06-03 20:52:47,314 | INFO     | 
[2025-06-03 15:53:06] 2025-06-03 20:52:47,314 | INFO     | architecture information:
[2025-06-03 15:53:06] 2025-06-03 20:52:47,314 | INFO     | executing command: cat /etc/os-release
[2025-06-03 15:53:06] 2025-06-03 20:52:47,320 | INFO     | cat /etc/os-release:
[2025-06-03 15:53:06] NAME="CentOS Linux"
[2025-06-03 15:53:06] VERSION="7 (Core)"
[2025-06-03 15:53:06] ID="centos"
[2025-06-03 15:53:06] ID_LIKE="rhel fedora"
[2025-06-03 15:53:06] VERSION_ID="7"
[2025-06-03 15:53:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 15:53:06] ANSI_COLOR="0;31"
[2025-06-03 15:53:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 15:53:06] HOME_URL="https://www.centos.org/"
[2025-06-03 15:53:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 15:53:06] 
[2025-06-03 15:53:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 15:53:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 15:53:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 15:53:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 15:53:06] 
[2025-06-03 15:53:06] 2025-06-03 20:52:47,320 | INFO     | **************************************
[2025-06-03 15:53:06] 2025-06-03 20:52:47,823 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-03 15:53:06] 2025-06-03 20:52:47,830 | INFO     | sufficient remaining disk space (2662308249600 B)
[2025-06-03 15:53:06] 2025-06-03 20:52:47,830 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 15:53:06] 2025-06-03 20:52:47,830 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 15:53:06] 2025-06-03 20:52:47,830 | INFO     | update_server=False
[2025-06-03 15:53:06] 2025-06-03 20:52:47,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 15:53:06] 2025-06-03 20:52:47,831 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:53:06] 2025-06-03 20:52:47,831 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 15:53:06] 2025-06-03 20:52:47,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 15:53:06] 2025-06-03 20:52:47,831 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 15:53:06] 2025-06-03 20:52:47,831 | INFO     | aborting loop
[2025-06-03 15:53:06] 2025-06-03 20:52:47,831 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 15:53:06] 2025-06-03 20:52:47,831 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 15:53:06] 2025-06-03 20:52:47,854 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 15:53:06] 2025-06-03 20:52:48,393 | INFO     | all job control threads have been joined
[2025-06-03 15:53:06] 2025-06-03 20:52:48,568 | INFO     | all data control threads have been joined
[2025-06-03 15:53:06] 2025-06-03 20:52:48,831 | INFO     | [job] retrieve thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:48,833 | INFO     | [job] queue monitor thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:48,836 | INFO     | [job] job monitor thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:49,071 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 15:53:06] 2025-06-03 20:52:49,150 | INFO     | [data] copytool_in thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:49,187 | INFO     | [payload] validate_post thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:49,302 | INFO     | all payload control threads have been joined
[2025-06-03 15:53:06] 2025-06-03 20:52:49,398 | INFO     | [job] control thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:49,573 | INFO     | [data] control thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:49,859 | INFO     | [data] copytool_out thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:49,860 | INFO     | [payload] failed_post thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:50,061 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:50,231 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:50,278 | INFO     | [job] validate thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:50,289 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:50,307 | INFO     | [payload] control thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:53,077 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:52:58,703 | INFO     | job.realtimelogging is not enabled
[2025-06-03 15:53:06] 2025-06-03 20:52:59,709 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 15:53:06] 2025-06-03 20:53:01,212 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140700544952128)>', '<ExcThread(monitor, started 140699831887616)>']
[2025-06-03 15:53:06] 2025-06-03 20:53:01,894 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 15:53:06] 2025-06-03 20:53:01,894 | INFO     | [monitor] control thread has ended
[2025-06-03 15:53:06] 2025-06-03 20:53:06,216 | INFO     | all workflow threads have been joined
[2025-06-03 15:53:06] 2025-06-03 20:53:06,217 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 15:53:06] 2025-06-03 20:53:06,217 | INFO     | traces error code: 0
[2025-06-03 15:53:06] 2025-06-03 20:53:06,217 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 15:53:06] 2025-06-03 20:53:06,256 [wrapper] ==== pilot stdout END ====
[2025-06-03 15:53:06] 2025-06-03 20:53:06,257 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 15:53:06] 2025-06-03 20:53:06,258 [wrapper] pilotpid: 1319223
[2025-06-03 15:53:06] 2025-06-03 20:53:06,259 [wrapper] Pilot exit status: 0
[2025-06-03 15:53:06] 2025-06-03 20:53:06,263 [wrapper] pandaids: 6677675851
[2025-06-03 15:53:06] 2025-06-03 20:53:06,285 [wrapper] cleanup supervisor_pilot 1413150 1319224
[2025-06-03 15:53:06] 2025-06-03 20:53:06,286 [wrapper] Test setup, not cleaning
[2025-06-03 15:53:06] 2025-06-03 20:53:06,287 [wrapper] apfmon messages muted
[2025-06-03 15:53:06] 2025-06-03 20:53:06,289 [wrapper] ==== wrapper stdout END ====
[2025-06-03 15:53:06] 2025-06-03 20:53:06,290 [wrapper] ==== wrapper stderr END ====
[2025-06-03 15:53:06]  *** Error codes and diagnostics ***
[2025-06-03 15:53:06]     "exeErrorCode": 0,
[2025-06-03 15:53:06]     "exeErrorDiag": "",
[2025-06-03 15:53:06]     "pilotErrorCode": 0,
[2025-06-03 15:53:06]     "pilotErrorDiag": "",
[2025-06-03 15:53:06]  *** Listing of results directory ***
[2025-06-03 15:53:06] total 388336
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc    495897 Jun  3 09:52 pilot3.tar.gz
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc      5111 Jun  3 09:52 queuedata.json
[2025-06-03 15:53:06] -rwx------ 1 boinc boinc     37140 Jun  3 09:53 runpilot2-wrapper.sh
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc       100 Jun  3 14:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 15:53:06] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 14:16 run_atlas
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc       105 Jun  3 14:16 job.xml
[2025-06-03 15:53:06] -rw-r--r-- 2 boinc boinc 216188713 Jun  3 14:16 EVNT.45006593._001453.pool.root.1
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc      6996 Jun  3 14:16 init_data.xml
[2025-06-03 15:53:06] drwxrwx--x 1 boinc boinc        76 Jun  3 14:16 shared
[2025-06-03 15:53:06] -rw-r--r-- 2 boinc boinc    508882 Jun  3 14:16 input.tar.gz
[2025-06-03 15:53:06] -rw-r--r-- 2 boinc boinc     15093 Jun  3 14:16 start_atlas.sh
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc         0 Jun  3 14:16 boinc_lockfile
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc      2522 Jun  3 14:16 pandaJob.out
[2025-06-03 15:53:06] -rw------- 1 boinc boinc    986893 Jun  3 14:16 agis_schedconf.cvmfs.json
[2025-06-03 15:53:06] -rw------- 1 boinc boinc   1603667 Jun  3 14:16 agis_ddmendpoints.agis.ALL.json
[2025-06-03 15:53:06] drwx------ 1 boinc boinc       368 Jun  3 14:16 pilot3
[2025-06-03 15:53:06] -rw------- 1 boinc boinc 176124107 Jun  3 15:52 HITS.45006595._036151.pool.root.1
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc       529 Jun  3 15:52 boinc_task_state.xml
[2025-06-03 15:53:06] -rw------- 1 boinc boinc        95 Jun  3 15:52 pilot_heartbeat.json
[2025-06-03 15:53:06] -rw------- 1 boinc boinc      1015 Jun  3 15:52 memory_monitor_summary.json
[2025-06-03 15:53:06] -rw------- 1 boinc boinc    205372 Jun  3 15:52 log.45006595._036151.job.log.tgz.1
[2025-06-03 15:53:06] -rw------- 1 boinc boinc      7634 Jun  3 15:52 heartbeat.json
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc        27 Jun  3 15:53 wrapper_checkpoint.txt
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc      8192 Jun  3 15:53 boinc_mmap_file
[2025-06-03 15:53:06] -rw------- 1 boinc boinc      4550 Jun  3 15:53 pilotlog.txt
[2025-06-03 15:53:06] -rw------- 1 boinc boinc    557525 Jun  3 15:53 log.45006595._036151.job.log.1
[2025-06-03 15:53:06] -rw------- 1 boinc boinc       357 Jun  3 15:53 output.list
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc       620 Jun  3 15:53 runtime_log
[2025-06-03 15:53:06] -rw------- 1 boinc boinc    778240 Jun  3 15:53 result.tar.gz
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc      8665 Jun  3 15:53 runtime_log.err
[2025-06-03 15:53:06] -rw------- 1 boinc boinc       645 Jun  3 15:53 k9vMDm5Big7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6ekKDm3P8ILn.diag
[2025-06-03 15:53:06] -rw-r--r-- 1 boinc boinc     21351 Jun  3 15:53 stderr.txt
[2025-06-03 15:53:06] HITS file was successfully produced:
[2025-06-03 15:53:06] -rw------- 1 boinc boinc 176124107 Jun  3 15:52 shared/HITS.pool.root.1
[2025-06-03 15:53:06]  *** Contents of shared directory: ***
[2025-06-03 15:53:06] total 384400
[2025-06-03 15:53:06] -rw-r--r-- 2 boinc boinc 216188713 Jun  3 14:16 ATLAS.root_0
[2025-06-03 15:53:06] -rw-r--r-- 2 boinc boinc    508882 Jun  3 14:16 input.tar.gz
[2025-06-03 15:53:06] -rw-r--r-- 2 boinc boinc     15093 Jun  3 14:16 start_atlas.sh
[2025-06-03 15:53:06] -rw------- 1 boinc boinc 176124107 Jun  3 15:52 HITS.pool.root.1
[2025-06-03 15:53:06] -rw------- 1 boinc boinc    778240 Jun  3 15:53 result.tar.gz
15:53:08 (1315490): run_atlas exited; CPU time 11327.599849
15:53:08 (1315490): called boinc_finish(0)

</stderr_txt>
]]>

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