Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:27:53 (3264558): wrapper (7.7.26015): starting
13:27:53 (3264558): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 13:27:53] Arguments: --nthreads 8
[2025-06-03 13:27:53] Threads: 8
[2025-06-03 13:27:53] Checking for CVMFS
[2025-06-03 13:27:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 13:27:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 13:27:53] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 13:27:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 13:27:53] 2.12.6.0 1583849 138382 438328 146750 2 186 24362011 32935936 2449 130560 1 357098609 99.628 364097952 20289 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 13:27:53] CVMFS is ok
[2025-06-03 13:27:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 13:27:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 13:27:54] Further information can be found at the LHC@home message board.
[2025-06-03 13:27:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 13:27:54] Checking for apptainer binary...
[2025-06-03 13:27:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 13:27:54] Running /usr/bin/apptainer --version
[2025-06-03 13:27:54] apptainer version 1.4.1-1.el9
[2025-06-03 13:27:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 13:27:54] c-6-7.aglt2.org
[2025-06-03 13:27:54] apptainer works
[2025-06-03 13:27:54] Set ATHENA_PROC_NUMBER=8
[2025-06-03 13:27:54] Set ATHENA_CORE_NUMBER=8
[2025-06-03 13:27:54] Starting ATLAS job with PandaID=6677617222
[2025-06-03 13:27:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:28:47 (2348366): wrapper (7.7.26015): starting
21:28:47 (2348366): wrapper: running run_atlas (--nthreads 10)
[2025-06-03 21:28:47] Arguments: --nthreads 10
[2025-06-03 21:28:47] Threads: 10
[2025-06-03 21:28:47] This job has been restarted, cleaning up previous attempt
[2025-06-03 21:28:47] Checking for CVMFS
[2025-06-03 21:28:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:28:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:28:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:28:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:28:47] 2.12.6.0 1583849 138862 439220 146763 2 21 29853913 32935936 15544 130560 1 360848126 99.630 365800107 20313 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 21:28:47] CVMFS is ok
[2025-06-03 21:28:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 21:28:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 21:28:47] Further information can be found at the LHC@home message board.
[2025-06-03 21:28:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:28:47] Checking for apptainer binary...
[2025-06-03 21:28:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:28:47] Running /usr/bin/apptainer --version
[2025-06-03 21:28:47] apptainer version 1.4.1-1.el9
[2025-06-03 21:28:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:28:48] c-6-7.aglt2.org
[2025-06-03 21:28:48] apptainer works
[2025-06-03 21:28:48] Set ATHENA_PROC_NUMBER=10
[2025-06-03 21:28:48] Set ATHENA_CORE_NUMBER=10
[2025-06-03 21:28:48] Starting ATLAS job with PandaID=6677617222
[2025-06-03 21:28:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:18:13]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:18:13] 2025-06-04 03:17:57,404 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6677617222/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:18:13] 2025-06-04 03:17:57,405 | INFO     | extracted standard info from prmon json
[2025-06-03 23:18:13] 2025-06-04 03:17:57,405 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:18:13] 2025-06-04 03:17:57,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:18:13] 2025-06-04 03:17:57,406 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:18:13] 2025-06-04 03:17:57,406 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:18:13] 2025-06-04 03:17:57,408 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:18:13] 2025-06-04 03:17:57,409 | INFO     | sum of square deviations: 379848710.91588795
[2025-06-03 23:18:13] 2025-06-04 03:17:57,410 | INFO     | sum of deviations: 19530585391.542065
[2025-06-03 23:18:13] 2025-06-04 03:17:57,410 | INFO     | mean x: 1749003801.0280373
[2025-06-03 23:18:13] 2025-06-04 03:17:57,410 | INFO     | mean y: 2294888.4859813084
[2025-06-03 23:18:13] 2025-06-04 03:17:57,410 | INFO     | -- intersect: -89925792543.33833
[2025-06-03 23:18:13] 2025-06-04 03:17:57,410 | INFO     | intersect: -89925792543.33833
[2025-06-03 23:18:13] 2025-06-04 03:17:57,410 | INFO     | chi2: 3.875059153697343
[2025-06-03 23:18:13] 2025-06-04 03:17:57,411 | INFO     | sum of square deviations: 329048673.41176385
[2025-06-03 23:18:13] 2025-06-04 03:17:57,411 | INFO     | sum of deviations: 18579449737.470596
[2025-06-03 23:18:13] 2025-06-04 03:17:57,411 | INFO     | mean x: 1749003648.5294118
[2025-06-03 23:18:13] 2025-06-04 03:17:57,412 | INFO     | mean y: 2292057.5098039214
[2025-06-03 23:18:13] 2025-06-04 03:17:57,412 | INFO     | -- intersect: -98753691492.19669
[2025-06-03 23:18:13] 2025-06-04 03:17:57,412 | INFO     | intersect: -98753691492.19669
[2025-06-03 23:18:13] 2025-06-04 03:17:57,412 | INFO     | chi2: 3.8848720530384764
[2025-06-03 23:18:13] 2025-06-04 03:17:57,412 | INFO     | current chi2=3.8848720530384764 (change=-0.25323224631991514 %)
[2025-06-03 23:18:13] 2025-06-04 03:17:57,413 | INFO     | right removable region: 101
[2025-06-03 23:18:13] 2025-06-04 03:17:57,413 | INFO     | sum of square deviations: 329046843.41176385
[2025-06-03 23:18:13] 2025-06-04 03:17:57,413 | INFO     | sum of deviations: -4023815933.5882382
[2025-06-03 23:18:13] 2025-06-04 03:17:57,414 | INFO     | mean x: 1749003953.5294118
[2025-06-03 23:18:13] 2025-06-04 03:17:57,414 | INFO     | mean y: 2365173.529411765
[2025-06-03 23:18:13] 2025-06-04 03:17:57,414 | INFO     | -- intersect: 21390414070.001106
[2025-06-03 23:18:13] 2025-06-04 03:17:57,414 | INFO     | intersect: 21390414070.001106
[2025-06-03 23:18:13] 2025-06-04 03:17:57,414 | INFO     | chi2: 1.2765181365942422
[2025-06-03 23:18:13] 2025-06-04 03:17:57,414 | INFO     | current chi2=1.2765181365942422 (change=67.05809934859273 %)
[2025-06-03 23:18:13] 2025-06-04 03:17:57,414 | INFO     | sum of square deviations: 282989250.90721655
[2025-06-03 23:18:13] 2025-06-04 03:17:57,415 | INFO     | sum of deviations: -18111560188.40206
[2025-06-03 23:18:13] 2025-06-04 03:17:57,415 | INFO     | mean x: 1749004106.030928
[2025-06-03 23:18:13] 2025-06-04 03:17:57,415 | INFO     | mean y: 2411658.1340206186
[2025-06-03 23:18:13] 2025-06-04 03:17:57,415 | INFO     | -- intersect: 111940208004.0718
[2025-06-03 23:18:13] 2025-06-04 03:17:57,415 | INFO     | intersect: 111940208004.0718
[2025-06-03 23:18:13] 2025-06-04 03:17:57,416 | INFO     | chi2: 0.28887553396214943
[2025-06-03 23:18:13] 2025-06-04 03:17:57,416 | INFO     | current chi2=0.28887553396214943 (change=77.37004076315978 %)
[2025-06-03 23:18:13] 2025-06-04 03:17:57,416 | INFO     | sum of square deviations: 241443370.9021737
[2025-06-03 23:18:13] 2025-06-04 03:17:57,417 | INFO     | sum of deviations: -16881400665.945646
[2025-06-03 23:18:13] 2025-06-04 03:17:57,417 | INFO     | mean x: 1749004258.5326087
[2025-06-03 23:18:13] 2025-06-04 03:17:57,417 | INFO     | mean y: 2406878.815217391
[2025-06-03 23:18:13] 2025-06-04 03:17:57,417 | INFO     | -- intersect: 122290467820.0168
[2025-06-03 23:18:13] 2025-06-04 03:17:57,417 | INFO     | intersect: 122290467820.0168
[2025-06-03 23:18:13] 2025-06-04 03:17:57,418 | INFO     | chi2: 0.25446573804132744
[2025-06-03 23:18:13] 2025-06-04 03:17:57,418 | INFO     | current chi2=0.25446573804132744 (change=11.91163386142996 %)
[2025-06-03 23:18:13] 2025-06-04 03:17:57,418 | INFO     | left removable region: 30
[2025-06-03 23:18:13] 2025-06-04 03:17:57,418 | INFO     | sum of square deviations: 110972300.87323947
[2025-06-03 23:18:13] 2025-06-04 03:17:57,419 | INFO     | sum of deviations: -4446192854.112677
[2025-06-03 23:18:13] 2025-06-04 03:17:57,419 | INFO     | mean x: 1749004533.0422535
[2025-06-03 23:18:13] 2025-06-04 03:17:57,419 | INFO     | mean y: 2349126.704225352
[2025-06-03 23:18:13] 2025-06-04 03:17:57,419 | INFO     | -- intersect: 70077596692.36407
[2025-06-03 23:18:13] 2025-06-04 03:17:57,419 | INFO     | intersect: 70077596692.36407
[2025-06-03 23:18:13] 2025-06-04 03:17:57,419 | INFO     | chi2: 0.1644871092640798
[2025-06-03 23:18:13] 2025-06-04 03:17:57,419 | INFO     | -- intersect: 70077596692.36407
[2025-06-03 23:18:13] 2025-06-04 03:17:57,420 | INFO     | current memory leak: -40.07 B/s (using 71 data points, chi2=0.16)
[2025-06-03 23:18:13] 2025-06-04 03:17:57,420 | INFO     | ..............................
[2025-06-03 23:18:13] 2025-06-04 03:17:57,420 | INFO     | . Timing measurements:
[2025-06-03 23:18:13] 2025-06-04 03:17:57,421 | INFO     | . get job = 0 s
[2025-06-03 23:18:13] 2025-06-04 03:17:57,421 | INFO     | . initial setup = 3 s
[2025-06-03 23:18:13] 2025-06-04 03:17:57,421 | INFO     | . payload setup = 7 s
[2025-06-03 23:18:13] 2025-06-04 03:17:57,421 | INFO     | . stage-in = 0 s
[2025-06-03 23:18:13] 2025-06-04 03:17:57,421 | INFO     | . payload execution = 6503 s
[2025-06-03 23:18:13] 2025-06-04 03:17:57,421 | INFO     | . stage-out = 0 s
[2025-06-03 23:18:13] 2025-06-04 03:17:57,421 | INFO     | . log creation = 0 s
[2025-06-03 23:18:13] 2025-06-04 03:17:57,421 | INFO     | ..............................
[2025-06-03 23:18:13] 2025-06-04 03:17:57,545 | INFO     | 
[2025-06-03 23:18:13] 2025-06-04 03:17:57,545 | INFO     | job summary report
[2025-06-03 23:18:13] 2025-06-04 03:17:57,545 | INFO     | --------------------------------------------------
[2025-06-03 23:18:13] 2025-06-04 03:17:57,545 | INFO     | PanDA job id: 6677617222
[2025-06-03 23:18:13] 2025-06-04 03:17:57,546 | INFO     | task id: 45006595
[2025-06-03 23:18:13] 2025-06-04 03:17:57,546 | INFO     | errors: (none)
[2025-06-03 23:18:13] 2025-06-04 03:17:57,546 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:18:13] 2025-06-04 03:17:57,546 | INFO     | pilot state: finished 
[2025-06-03 23:18:13] 2025-06-04 03:17:57,546 | INFO     | transexitcode: 0
[2025-06-03 23:18:13] 2025-06-04 03:17:57,546 | INFO     | exeerrorcode: 0
[2025-06-03 23:18:13] 2025-06-04 03:17:57,546 | INFO     | exeerrordiag: 
[2025-06-03 23:18:13] 2025-06-04 03:17:57,546 | INFO     | exitcode: 0
[2025-06-03 23:18:13] 2025-06-04 03:17:57,546 | INFO     | exitmsg: OK
[2025-06-03 23:18:13] 2025-06-04 03:17:57,546 | INFO     | cpuconsumptiontime: 42711 s
[2025-06-03 23:18:13] 2025-06-04 03:17:57,547 | INFO     | nevents: 400
[2025-06-03 23:18:13] 2025-06-04 03:17:57,547 | INFO     | neventsw: 0
[2025-06-03 23:18:13] 2025-06-04 03:17:57,547 | INFO     | pid: 2358591
[2025-06-03 23:18:13] 2025-06-04 03:17:57,547 | INFO     | pgrp: 2358591
[2025-06-03 23:18:13] 2025-06-04 03:17:57,547 | INFO     | corecount: 10
[2025-06-03 23:18:13] 2025-06-04 03:17:57,547 | INFO     | event service: False
[2025-06-03 23:18:13] 2025-06-04 03:17:57,547 | INFO     | sizes: {0: 2405070, 1: 2405212, 5: 2405418, 11: 2405474, 6514: 2432424, 6516: 2441549, 6521: 2441663}
[2025-06-03 23:18:13] 2025-06-04 03:17:57,547 | INFO     | --------------------------------------------------
[2025-06-03 23:18:13] 2025-06-04 03:17:57,547 | INFO     | 
[2025-06-03 23:18:13] 2025-06-04 03:17:57,547 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-03 23:18:13] 2025-06-04 03:17:57,563 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,564 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,564 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,564 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,564 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,564 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,564 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,564 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,564 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,564 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,564 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,565 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,565 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,565 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,565 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,565 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,565 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,565 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:18:13] 2025-06-04 03:17:57,565 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,565 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:18:13] 2025-06-04 03:17:57,566 | INFO     | job 6677617222 has completed (purged errors)
[2025-06-03 23:18:13] 2025-06-04 03:17:57,566 | INFO     | overall cleanup function is called
[2025-06-03 23:18:13] 2025-06-04 03:17:58,572 | INFO     | --- collectZombieJob: --- 10, [2358591]
[2025-06-03 23:18:13] 2025-06-04 03:17:58,573 | INFO     | zombie collector waiting for pid 2358591
[2025-06-03 23:18:13] 2025-06-04 03:17:58,573 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:18:13] 2025-06-04 03:17:58,573 | INFO     | collected zombie processes
[2025-06-03 23:18:13] 2025-06-04 03:17:58,573 | INFO     | will attempt to kill all subprocesses of pid=2358591
[2025-06-03 23:18:13] 2025-06-04 03:17:58,941 | INFO     | process IDs to be killed: [2358591] (in reverse order)
[2025-06-03 23:18:13] 2025-06-04 03:17:59,054 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:18:13] 2025-06-04 03:17:59,054 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:18:13] 2025-06-04 03:17:59,069 | INFO     | did not find any defunct processes belonging to 2358591
[2025-06-03 23:18:13] 2025-06-04 03:17:59,084 | INFO     | did not find any defunct processes belonging to 2358591
[2025-06-03 23:18:13] 2025-06-04 03:17:59,084 | INFO     | ready for new job
[2025-06-03 23:18:13] 2025-06-04 03:17:59,084 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:18:13] 2025-06-04 03:17:59,086 | INFO     | **************************************
[2025-06-03 23:18:13] 2025-06-04 03:17:59,086 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:18:13] 2025-06-04 03:17:59,086 | INFO     | **************************************
[2025-06-03 23:18:13] 2025-06-04 03:17:59,086 | INFO     | 
[2025-06-03 23:18:13] 2025-06-04 03:17:59,100 | INFO     | architecture information:
[2025-06-03 23:18:13] 2025-06-04 03:17:59,100 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:18:13] 2025-06-04 03:17:59,114 | INFO     | cat /etc/os-release:
[2025-06-03 23:18:13] NAME="CentOS Linux"
[2025-06-03 23:18:13] VERSION="7 (Core)"
[2025-06-03 23:18:13] ID="centos"
[2025-06-03 23:18:13] ID_LIKE="rhel fedora"
[2025-06-03 23:18:13] VERSION_ID="7"
[2025-06-03 23:18:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:18:13] ANSI_COLOR="0;31"
[2025-06-03 23:18:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:18:13] HOME_URL="https://www.centos.org/"
[2025-06-03 23:18:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:18:13] 
[2025-06-03 23:18:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:18:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:18:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:18:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:18:13] 
[2025-06-03 23:18:13] 2025-06-04 03:17:59,115 | INFO     | **************************************
[2025-06-03 23:18:13] 2025-06-04 03:17:59,617 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-03 23:18:13] 2025-06-04 03:17:59,633 | INFO     | sufficient remaining disk space (75980865536 B)
[2025-06-03 23:18:13] 2025-06-04 03:17:59,633 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:18:13] 2025-06-04 03:17:59,634 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:18:13] 2025-06-04 03:17:59,634 | INFO     | update_server=False
[2025-06-03 23:18:13] 2025-06-04 03:17:59,634 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:18:13] 2025-06-04 03:17:59,634 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:18:13] 2025-06-04 03:17:59,634 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:18:13] 2025-06-04 03:17:59,635 | INFO     | aborting loop
[2025-06-03 23:18:13] 2025-06-04 03:17:59,635 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:18:13] 2025-06-04 03:17:59,635 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:18:13] 2025-06-04 03:17:59,635 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:18:13] 2025-06-04 03:18:00,156 | INFO     | all payload control threads have been joined
[2025-06-03 23:18:13] 2025-06-04 03:18:00,286 | INFO     | all job control threads have been joined
[2025-06-03 23:18:13] 2025-06-04 03:18:00,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:18:13] 2025-06-04 03:18:00,639 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:00,640 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:00,696 | INFO     | all data control threads have been joined
[2025-06-03 23:18:13] 2025-06-04 03:18:00,865 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:00,982 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:01,053 | INFO     | [job] validate thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:01,103 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:01,161 | INFO     | [payload] control thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:01,291 | INFO     | [job] control thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:01,484 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:01,701 | INFO     | [data] control thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:01,833 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:02,013 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:02,069 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:02,485 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:02,556 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:18:13] 2025-06-04 03:18:03,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:18:13] 2025-06-04 03:18:03,561 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:07,080 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:18:13] 2025-06-04 03:18:08,365 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140369897133888)>', '<ExcThread(monitor, started 140369547204352)>']
[2025-06-03 23:18:13] 2025-06-04 03:18:08,677 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:18:13] 2025-06-04 03:18:08,678 | INFO     | [monitor] control thread has ended
[2025-06-03 23:18:13] 2025-06-04 03:18:13,385 | INFO     | all workflow threads have been joined
[2025-06-03 23:18:13] 2025-06-04 03:18:13,386 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:18:13] 2025-06-04 03:18:13,386 | INFO     | traces error code: 0
[2025-06-03 23:18:13] 2025-06-04 03:18:13,386 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:18:13] 2025-06-04 03:18:13,535 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:18:13] 2025-06-04 03:18:13,538 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:18:13] 2025-06-04 03:18:13,540 [wrapper] pilotpid: 2352027
[2025-06-03 23:18:13] 2025-06-04 03:18:13,542 [wrapper] Pilot exit status: 0
[2025-06-03 23:18:13] 2025-06-04 03:18:13,550 [wrapper] pandaids: 6677617222 6677617222
[2025-06-03 23:18:13] 2025-06-04 03:18:13,625 [wrapper] cleanup supervisor_pilot 3072729 2352028
[2025-06-03 23:18:13] 2025-06-04 03:18:13,627 [wrapper] Test setup, not cleaning
[2025-06-03 23:18:13] 2025-06-04 03:18:13,630 [wrapper] apfmon messages muted
[2025-06-03 23:18:13] 2025-06-04 03:18:13,632 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:18:13] 2025-06-04 03:18:13,634 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:18:13]  *** Error codes and diagnostics ***
[2025-06-03 23:18:13]     "exeErrorCode": 0,
[2025-06-03 23:18:13]     "exeErrorDiag": "",
[2025-06-03 23:18:13]     "pilotErrorCode": 0,
[2025-06-03 23:18:13]     "pilotErrorDiag": "",
[2025-06-03 23:18:13]  *** Listing of results directory ***
[2025-06-03 23:18:13] total 595136
[2025-06-03 23:18:13] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 08:14 pilot3.tar.gz
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 08:15 queuedata.json
[2025-06-03 23:18:13] -rwx------. 1 boincer umatlas     37140 Jun  3 08:16 runpilot2-wrapper.sh
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas       100 Jun  3 13:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:18:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 13:27 run_atlas
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas       105 Jun  3 13:27 job.xml
[2025-06-03 23:18:13] -rw-r--r--. 3 boincer umatlas 214710047 Jun  3 13:27 EVNT.45006593._001282.pool.root.1
[2025-06-03 23:18:13] -rw-r--r--. 3 boincer umatlas 214710047 Jun  3 13:27 ATLAS.root_0
[2025-06-03 23:18:13] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 13:27 start_atlas.sh
[2025-06-03 23:18:13] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 13:27 shared
[2025-06-03 23:18:13] -rw-r--r--. 2 boincer umatlas    508886 Jun  3 13:27 input.tar.gz
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas         0 Jun  3 13:27 boinc_lockfile
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 21:28 pandaJob.out
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas    986077 Jun  3 21:28 agis_schedconf.cvmfs.json
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas   1603667 Jun  3 21:28 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas      6659 Jun  3 23:12 init_data.xml
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas 174226912 Jun  3 23:17 HITS.45006595._031849.pool.root.1
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas       531 Jun  3 23:17 boinc_task_state.xml
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas      1049 Jun  3 23:17 memory_monitor_summary.json
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 23:17 boinc_mmap_file
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas        28 Jun  3 23:17 wrapper_checkpoint.txt
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas    348537 Jun  3 23:17 log.45006595._031849.job.log.tgz.1
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas      7736 Jun  3 23:17 heartbeat.json
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas        96 Jun  3 23:17 pilot_heartbeat.json
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas      4476 Jun  3 23:18 pilotlog.txt
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas    615377 Jun  3 23:18 log.45006595._031849.job.log.1
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas       357 Jun  3 23:18 output.list
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas       620 Jun  3 23:18 runtime_log
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas    983040 Jun  3 23:18 result.tar.gz
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas      8731 Jun  3 23:18 runtime_log.err
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas       780 Jun  3 23:18 7rONDmOkfg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9zjKDmqQ57em.diag
[2025-06-03 23:18:13] -rw-r--r--. 1 boincer umatlas     23104 Jun  3 23:18 stderr.txt
[2025-06-03 23:18:13] HITS file was successfully produced:
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas 174226912 Jun  3 23:17 shared/HITS.pool.root.1
[2025-06-03 23:18:13]  *** Contents of shared directory: ***
[2025-06-03 23:18:13] total 381308
[2025-06-03 23:18:13] -rw-r--r--. 3 boincer umatlas 214710047 Jun  3 13:27 ATLAS.root_0
[2025-06-03 23:18:13] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 13:27 start_atlas.sh
[2025-06-03 23:18:13] -rw-r--r--. 2 boincer umatlas    508886 Jun  3 13:27 input.tar.gz
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas 174226912 Jun  3 23:17 HITS.pool.root.1
[2025-06-03 23:18:13] -rw-------. 1 boincer umatlas    983040 Jun  3 23:18 result.tar.gz
23:18:14 (2348366): run_atlas exited; CPU time 42926.579856
23:18:14 (2348366): called boinc_finish(0)

</stderr_txt>
]]>

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