Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:25:43 (3222626): wrapper (7.7.26015): starting
13:25:43 (3222626): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 13:25:43] Arguments: --nthreads 8
[2025-06-03 13:25:43] Threads: 8
[2025-06-03 13:25:43] Checking for CVMFS
[2025-06-03 13:25:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 13:25:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 13:25:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 13:25:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 13:25:44] 2.12.6.0 1583849 138379 439808 146750 0 186 24358050 32935936 2898 130560 1 356989083 99.628 364097952 20289 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 13:25:44] CVMFS is ok
[2025-06-03 13:25:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 13:25:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 13:25:44] Further information can be found at the LHC@home message board.
[2025-06-03 13:25:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 13:25:44] Checking for apptainer binary...
[2025-06-03 13:25:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 13:25:44] Running /usr/bin/apptainer --version
[2025-06-03 13:25:44] apptainer version 1.4.1-1.el9
[2025-06-03 13:25:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 13:25:44] c-6-7.aglt2.org
[2025-06-03 13:25:44] apptainer works
[2025-06-03 13:25:44] Set ATHENA_PROC_NUMBER=8
[2025-06-03 13:25:44] Set ATHENA_CORE_NUMBER=8
[2025-06-03 13:25:44] Starting ATLAS job with PandaID=6677675478
[2025-06-03 13:25:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 17:06:32]  *** The last 200 lines of the pilot log: ***
[2025-06-03 17:06:32] 2025-06-03 20:32:12,949 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 17:06:32] 2025-06-03 20:32:12,956 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677675478/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 17:06:32] 2025-06-03 20:32:12,957 | INFO     | extracted standard info from prmon json
[2025-06-03 17:06:32] 2025-06-03 20:32:12,957 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 17:06:32] 2025-06-03 20:32:12,958 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 17:06:32] 2025-06-03 20:32:12,979 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 17:06:32] 2025-06-03 20:32:12,980 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 17:06:32] 2025-06-03 20:32:13,016 | INFO     | fitting pss+swap vs Time
[2025-06-03 17:06:32] 2025-06-03 20:32:13,017 | INFO     | sum of square deviations: 1900625670.9945428
[2025-06-03 17:06:32] 2025-06-03 20:32:13,018 | INFO     | sum of deviations: 24443356005.68307
[2025-06-03 17:06:32] 2025-06-03 20:32:13,018 | INFO     | mean x: 1748977122.3387978
[2025-06-03 17:06:32] 2025-06-03 20:32:13,018 | INFO     | mean y: 2027565.650273224
[2025-06-03 17:06:32] 2025-06-03 20:32:13,019 | INFO     | -- intersect: -22491023590.89443
[2025-06-03 17:06:32] 2025-06-03 20:32:13,019 | INFO     | intersect: -22491023590.89443
[2025-06-03 17:06:32] 2025-06-03 20:32:13,019 | INFO     | chi2: 3.3028902180846194
[2025-06-03 17:06:32] 2025-06-03 20:32:13,019 | INFO     | sum of square deviations: 1749086511.5955095
[2025-06-03 17:06:32] 2025-06-03 20:32:13,026 | INFO     | sum of deviations: 28459796980.033684
[2025-06-03 17:06:32] 2025-06-03 20:32:13,027 | INFO     | mean x: 1748976969.8426967
[2025-06-03 17:06:32] 2025-06-03 20:32:13,027 | INFO     | mean y: 2031556.1797752809
[2025-06-03 17:06:32] 2025-06-03 20:32:13,027 | INFO     | -- intersect: -28455983044.29451
[2025-06-03 17:06:32] 2025-06-03 20:32:13,027 | INFO     | intersect: -28455983044.29451
[2025-06-03 17:06:32] 2025-06-03 20:32:13,027 | INFO     | chi2: 3.2250585219047943
[2025-06-03 17:06:32] 2025-06-03 20:32:13,027 | INFO     | current chi2=3.2250585219047943 (change=2.356472393592316 %)
[2025-06-03 17:06:32] 2025-06-03 20:32:13,028 | INFO     | right removable region: 177
[2025-06-03 17:06:32] 2025-06-03 20:32:13,028 | INFO     | sum of square deviations: 1749059732.9044955
[2025-06-03 17:06:32] 2025-06-03 20:32:13,029 | INFO     | sum of deviations: -9843610729.803373
[2025-06-03 17:06:32] 2025-06-03 20:32:13,029 | INFO     | mean x: 1748977274.8483145
[2025-06-03 17:06:32] 2025-06-03 20:32:13,029 | INFO     | mean y: 2061942.4887640448
[2025-06-03 17:06:32] 2025-06-03 20:32:13,029 | INFO     | -- intersect: 9845208602.946012
[2025-06-03 17:06:32] 2025-06-03 20:32:13,029 | INFO     | intersect: 9845208602.946012
[2025-06-03 17:06:32] 2025-06-03 20:32:13,030 | INFO     | chi2: 1.0661279934465924
[2025-06-03 17:06:32] 2025-06-03 20:32:13,030 | INFO     | current chi2=1.0661279934465924 (change=67.72136150305198 %)
[2025-06-03 17:06:32] 2025-06-03 20:32:13,031 | INFO     | sum of square deviations: 1605773019.7803428
[2025-06-03 17:06:32] 2025-06-03 20:32:13,032 | INFO     | sum of deviations: -28708592493.786118
[2025-06-03 17:06:32] 2025-06-03 20:32:13,032 | INFO     | mean x: 1748977427.3583815
[2025-06-03 17:06:32] 2025-06-03 20:32:13,032 | INFO     | mean y: 2081876.3352601156
[2025-06-03 17:06:32] 2025-06-03 20:32:13,032 | INFO     | -- intersect: 31270934711.918842
[2025-06-03 17:06:32] 2025-06-03 20:32:13,032 | INFO     | intersect: 31270934711.918842
[2025-06-03 17:06:32] 2025-06-03 20:32:13,033 | INFO     | chi2: 0.2532707229351379
[2025-06-03 17:06:32] 2025-06-03 20:32:13,033 | INFO     | current chi2=0.2532707229351379 (change=76.24387273460844 %)
[2025-06-03 17:06:32] 2025-06-03 20:32:13,033 | INFO     | sum of square deviations: 1470532969.1190438
[2025-06-03 17:06:32] 2025-06-03 20:32:13,035 | INFO     | sum of deviations: -26624497576.880943
[2025-06-03 17:06:32] 2025-06-03 20:32:13,035 | INFO     | mean x: 1748977579.8690476
[2025-06-03 17:06:32] 2025-06-03 20:32:13,035 | INFO     | mean y: 2079529.369047619
[2025-06-03 17:06:32] 2025-06-03 20:32:13,035 | INFO     | -- intersect: 31667911112.28063
[2025-06-03 17:06:32] 2025-06-03 20:32:13,035 | INFO     | intersect: 31667911112.28063
[2025-06-03 17:06:32] 2025-06-03 20:32:13,036 | INFO     | chi2: 0.25240334432070805
[2025-06-03 17:06:32] 2025-06-03 20:32:13,036 | INFO     | current chi2=0.25240334432070805 (change=0.34247093559724384 %)
[2025-06-03 17:06:32] 2025-06-03 20:32:13,036 | INFO     | left removable region: 30
[2025-06-03 17:06:32] 2025-06-03 20:32:13,036 | INFO     | sum of square deviations: 985181951.6870744
[2025-06-03 17:06:32] 2025-06-03 20:32:13,037 | INFO     | sum of deviations: -13689062412.35374
[2025-06-03 17:06:32] 2025-06-03 20:32:13,037 | INFO     | mean x: 1748977854.4149659
[2025-06-03 17:06:32] 2025-06-03 20:32:13,037 | INFO     | mean y: 2073549.2517006802
[2025-06-03 17:06:32] 2025-06-03 20:32:13,037 | INFO     | -- intersect: 24304048393.50434
[2025-06-03 17:06:32] 2025-06-03 20:32:13,037 | INFO     | intersect: 24304048393.50434
[2025-06-03 17:06:32] 2025-06-03 20:32:13,038 | INFO     | chi2: 0.16423384315092826
[2025-06-03 17:06:32] 2025-06-03 20:32:13,038 | INFO     | -- intersect: 24304048393.50434
[2025-06-03 17:06:32] 2025-06-03 20:32:13,038 | INFO     | current memory leak: -13.89 B/s (using 147 data points, chi2=0.16)
[2025-06-03 17:06:32] 2025-06-03 20:32:13,039 | INFO     | ..............................
[2025-06-03 17:06:32] 2025-06-03 20:32:13,039 | INFO     | . Timing measurements:
[2025-06-03 17:06:32] 2025-06-03 20:32:13,039 | INFO     | . get job = 0 s
[2025-06-03 17:06:32] 2025-06-03 20:32:13,039 | INFO     | . initial setup = 2 s
[2025-06-03 17:06:32] 2025-06-03 20:32:13,039 | INFO     | . payload setup = 3 s
[2025-06-03 17:06:32] 2025-06-03 20:32:13,040 | INFO     | . stage-in = 0 s
[2025-06-03 17:06:32] 2025-06-03 20:32:13,040 | INFO     | . payload execution = 11141 s
[2025-06-03 17:06:32] 2025-06-03 20:32:13,040 | INFO     | . stage-out = 3 s
[2025-06-03 17:06:32] 2025-06-03 20:32:13,040 | INFO     | . log creation = 0 s
[2025-06-03 17:06:32] 2025-06-03 20:32:13,040 | INFO     | ..............................
[2025-06-03 17:06:32] 2025-06-03 20:32:13,268 | INFO     | 
[2025-06-03 17:06:32] 2025-06-03 20:32:13,268 | INFO     | job summary report
[2025-06-03 17:06:32] 2025-06-03 20:32:13,268 | INFO     | --------------------------------------------------
[2025-06-03 17:06:32] 2025-06-03 20:32:13,269 | INFO     | PanDA job id: 6677675478
[2025-06-03 17:06:32] 2025-06-03 20:32:13,269 | INFO     | task id: 45006595
[2025-06-03 17:06:32] 2025-06-03 20:32:13,269 | INFO     | errors: (none)
[2025-06-03 17:06:32] 2025-06-03 20:32:13,269 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 17:06:32] 2025-06-03 20:32:13,269 | INFO     | pilot state: finished 
[2025-06-03 17:06:32] 2025-06-03 20:32:13,269 | INFO     | transexitcode: 0
[2025-06-03 17:06:32] 2025-06-03 20:32:13,269 | INFO     | exeerrorcode: 0
[2025-06-03 17:06:32] 2025-06-03 20:32:13,269 | INFO     | exeerrordiag: 
[2025-06-03 17:06:32] 2025-06-03 20:32:13,269 | INFO     | exitcode: 0
[2025-06-03 17:06:32] 2025-06-03 20:32:13,269 | INFO     | exitmsg: OK
[2025-06-03 17:06:32] 2025-06-03 20:32:13,270 | INFO     | cpuconsumptiontime: 42354 s
[2025-06-03 17:06:32] 2025-06-03 20:32:13,270 | INFO     | nevents: 400
[2025-06-03 17:06:32] 2025-06-03 20:32:13,270 | INFO     | neventsw: 0
[2025-06-03 17:06:32] 2025-06-03 20:32:13,270 | INFO     | pid: 3235563
[2025-06-03 17:06:32] 2025-06-03 20:32:13,270 | INFO     | pgrp: 3235563
[2025-06-03 17:06:32] 2025-06-03 20:32:13,270 | INFO     | corecount: 8
[2025-06-03 17:06:32] 2025-06-03 20:32:13,270 | INFO     | event service: False
[2025-06-03 17:06:32] 2025-06-03 20:32:13,270 | INFO     | sizes: {0: 2405183, 3: 2405389, 11: 2405417, 11149: 2434413, 11153: 2443354, 11155: 2443410, 11169: 2443708}
[2025-06-03 17:06:32] 2025-06-03 20:32:13,270 | INFO     | --------------------------------------------------
[2025-06-03 17:06:32] 2025-06-03 20:32:13,270 | INFO     | 
[2025-06-03 17:06:32] 2025-06-03 20:32:13,271 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 17:06:32] 2025-06-03 20:32:13,315 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,316 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,316 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,316 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,316 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,317 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,317 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,317 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,317 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,317 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,317 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,317 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,317 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,317 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,318 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,318 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,318 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 17:06:32] 2025-06-03 20:32:13,318 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,318 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 17:06:32] 2025-06-03 20:32:13,318 | INFO     | job 6677675478 has completed (purged errors)
[2025-06-03 17:06:32] 2025-06-03 20:32:13,318 | INFO     | overall cleanup function is called
[2025-06-03 17:06:32] 2025-06-03 20:32:14,330 | INFO     | --- collectZombieJob: --- 10, [3235563]
[2025-06-03 17:06:32] 2025-06-03 20:32:14,330 | INFO     | zombie collector waiting for pid 3235563
[2025-06-03 17:06:32] 2025-06-03 20:32:14,330 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 17:06:32] 2025-06-03 20:32:14,331 | INFO     | collected zombie processes
[2025-06-03 17:06:32] 2025-06-03 20:32:14,331 | INFO     | will attempt to kill all subprocesses of pid=3235563
[2025-06-03 17:06:32] 2025-06-03 20:32:15,000 | INFO     | process IDs to be killed: [3235563] (in reverse order)
[2025-06-03 17:06:32] 2025-06-03 20:32:15,137 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 17:06:32] 2025-06-03 20:32:15,138 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 17:06:32] 2025-06-03 20:32:15,166 | INFO     | did not find any defunct processes belonging to 3235563
[2025-06-03 17:06:32] 2025-06-03 20:32:15,202 | INFO     | did not find any defunct processes belonging to 3235563
[2025-06-03 17:06:32] 2025-06-03 20:32:15,202 | INFO     | ready for new job
[2025-06-03 17:06:32] 2025-06-03 20:32:15,203 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 17:06:32] 2025-06-03 20:32:15,209 | INFO     | **************************************
[2025-06-03 17:06:32] 2025-06-03 20:32:15,209 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 17:06:32] 2025-06-03 20:32:15,209 | INFO     | **************************************
[2025-06-03 17:06:32] 2025-06-03 20:32:15,209 | INFO     | 
[2025-06-03 17:06:32] 2025-06-03 20:32:15,211 | INFO     | architecture information:
[2025-06-03 17:06:32] 2025-06-03 20:32:15,212 | INFO     | executing command: cat /etc/os-release
[2025-06-03 17:06:32] 2025-06-03 20:32:15,284 | INFO     | cat /etc/os-release:
[2025-06-03 17:06:32] NAME="CentOS Linux"
[2025-06-03 17:06:32] VERSION="7 (Core)"
[2025-06-03 17:06:32] ID="centos"
[2025-06-03 17:06:32] ID_LIKE="rhel fedora"
[2025-06-03 17:06:32] VERSION_ID="7"
[2025-06-03 17:06:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 17:06:32] ANSI_COLOR="0;31"
[2025-06-03 17:06:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 17:06:32] HOME_URL="https://www.centos.org/"
[2025-06-03 17:06:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 17:06:32] 
[2025-06-03 17:06:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 17:06:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 17:06:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 17:06:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 17:06:32] 
[2025-06-03 17:06:32] 2025-06-03 20:32:15,284 | INFO     | **************************************
[2025-06-03 17:06:32] 2025-06-03 20:32:15,786 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 17:06:32] 2025-06-03 20:32:15,817 | INFO     | sufficient remaining disk space (74193043456 B)
[2025-06-03 17:06:32] 2025-06-03 20:32:15,817 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 17:06:32] 2025-06-03 20:32:15,817 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 17:06:32] 2025-06-03 20:32:15,817 | INFO     | update_server=False
[2025-06-03 17:06:32] 2025-06-03 20:32:15,818 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 17:06:32] 2025-06-03 20:32:15,821 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 17:06:32] 2025-06-03 20:32:15,860 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:06:32] 2025-06-03 20:32:15,861 | INFO     | aborting loop
[2025-06-03 17:06:32] 2025-06-03 20:32:15,891 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 17:06:32] 2025-06-03 20:32:15,892 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 17:06:32] 2025-06-03 20:32:15,892 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 17:06:32] 2025-06-03 20:32:16,425 | INFO     | all job control threads have been joined
[2025-06-03 17:06:32] 2025-06-03 20:32:16,823 | INFO     | [job] retrieve thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:16,861 | INFO     | all data control threads have been joined
[2025-06-03 17:06:32] 2025-06-03 20:32:16,866 | INFO     | [job] job monitor thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:16,924 | INFO     | [payload] validate_post thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:16,961 | INFO     | all payload control threads have been joined
[2025-06-03 17:06:32] 2025-06-03 20:32:17,115 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:17,141 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:17,410 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:17,444 | INFO     | [job] control thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:17,628 | INFO     | [data] copytool_in thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:17,829 | INFO     | [data] copytool_out thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:17,871 | INFO     | [data] control thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:17,967 | INFO     | [payload] control thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:18,081 | INFO     | [job] validate thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:18,191 | INFO     | [payload] failed_post thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:18,206 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:06:32] 2025-06-03 20:32:18,296 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:19,070 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 17:06:32] 2025-06-03 20:32:19,213 | INFO     | [job] queue monitor thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:23,079 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 17:06:32] 2025-06-03 20:32:23,326 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140542919776064)>', '<ExcThread(monitor, started 140542562248448)>']
[2025-06-03 17:06:32] 2025-06-03 20:32:23,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 17:06:32] 2025-06-03 20:32:23,939 | INFO     | [monitor] control thread has ended
[2025-06-03 17:06:32] 2025-06-03 20:32:28,352 | INFO     | all workflow threads have been joined
[2025-06-03 17:06:32] 2025-06-03 20:32:28,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 17:06:32] 2025-06-03 20:32:28,353 | INFO     | traces error code: 0
[2025-06-03 17:06:32] 2025-06-03 20:32:28,353 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 17:06:32] 2025-06-03 20:32:28,508 [wrapper] ==== pilot stdout END ====
[2025-06-03 17:06:32] 2025-06-03 20:32:28,511 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 17:06:32] 2025-06-03 20:32:28,514 [wrapper] pilotpid: 3226286
[2025-06-03 17:06:32] 2025-06-03 20:32:28,516 [wrapper] Pilot exit status: 0
[2025-06-03 17:06:32] 2025-06-03 20:32:28,543 [wrapper] pandaids: 6677675478
[2025-06-03 17:06:32] 2025-06-03 20:32:28,626 [wrapper] cleanup supervisor_pilot  870619 3226287
[2025-06-03 17:06:32] 2025-06-03 20:32:28,630 [wrapper] Test setup, not cleaning
[2025-06-03 17:06:32] 2025-06-03 20:32:28,634 [wrapper] apfmon messages muted
[2025-06-03 17:06:32] 2025-06-03 20:32:28,637 [wrapper] ==== wrapper stdout END ====
[2025-06-03 17:06:32] 2025-06-03 20:32:28,640 [wrapper] ==== wrapper stderr END ====
[2025-06-03 17:06:32]  *** Error codes and diagnostics ***
[2025-06-03 17:06:32]     "exeErrorCode": 0,
[2025-06-03 17:06:32]     "exeErrorDiag": "",
[2025-06-03 17:06:32]     "pilotErrorCode": 0,
[2025-06-03 17:06:32]     "pilotErrorDiag": "",
[2025-06-03 17:06:32]  *** Listing of results directory ***
[2025-06-03 17:06:32] total 395716
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 10:47 queuedata.json
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 10:47 pilot3.tar.gz
[2025-06-03 17:06:32] -rwx------. 1 boincer umatlas     37140 Jun  3 10:48 runpilot2-wrapper.sh
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas       100 Jun  3 13:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 17:06:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 13:25 run_atlas
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas       105 Jun  3 13:25 job.xml
[2025-06-03 17:06:32] -rw-r--r--. 2 boincer umatlas 213969128 Jun  3 13:25 EVNT.45006593._001440.pool.root.1
[2025-06-03 17:06:32] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 13:25 start_atlas.sh
[2025-06-03 17:06:32] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 13:25 shared
[2025-06-03 17:06:32] -rw-r--r--. 2 boincer umatlas    508881 Jun  3 13:25 input.tar.gz
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas         0 Jun  3 13:25 boinc_lockfile
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas      2524 Jun  3 13:25 pandaJob.out
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas    985078 Jun  3 13:25 agis_schedconf.cvmfs.json
[2025-06-03 17:06:32] drwx------. 4 boincer umatlas      4096 Jun  3 13:25 pilot3
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas 184824154 Jun  3 16:31 HITS.45006595._035835.pool.root.1
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas       529 Jun  3 16:31 boinc_task_state.xml
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas      1039 Jun  3 16:31 memory_monitor_summary.json
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas   1603667 Jun  3 16:31 agis_ddmendpoints.agis.ALL.json
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas    359739 Jun  3 16:31 log.45006595._035835.job.log.tgz.1
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas        95 Jun  3 16:32 pilot_heartbeat.json
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas      7717 Jun  3 16:32 heartbeat.json
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas      4353 Jun  3 16:32 pilotlog.txt
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas    933510 Jun  3 16:32 log.45006595._035835.job.log.1
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas       357 Jun  3 16:32 output.list
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas       620 Jun  3 16:32 runtime_log
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas   1310720 Jun  3 16:32 result.tar.gz
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas      8645 Jun  3 16:32 runtime_log.err
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas       654 Jun  3 16:32 KqDNDmC7hg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAckKDmqOyeyn.diag
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas      6657 Jun  3 17:04 init_data.xml
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas        27 Jun  3 17:06 wrapper_checkpoint.txt
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 17:06 boinc_mmap_file
[2025-06-03 17:06:32] -rw-r--r--. 1 boincer umatlas     20893 Jun  3 17:06 stderr.txt
[2025-06-03 17:06:32] HITS file was successfully produced:
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas 184824154 Jun  3 16:31 shared/HITS.pool.root.1
[2025-06-03 17:06:32]  *** Contents of shared directory: ***
[2025-06-03 17:06:32] total 391256
[2025-06-03 17:06:32] -rw-r--r--. 2 boincer umatlas 213969128 Jun  3 13:25 ATLAS.root_0
[2025-06-03 17:06:32] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 13:25 start_atlas.sh
[2025-06-03 17:06:32] -rw-r--r--. 2 boincer umatlas    508881 Jun  3 13:25 input.tar.gz
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas 184824154 Jun  3 16:31 HITS.pool.root.1
[2025-06-03 17:06:32] -rw-------. 1 boincer umatlas   1310720 Jun  3 16:32 result.tar.gz
17:06:34 (3222626): run_atlas exited; CPU time 42770.986556
17:06:34 (3222626): called boinc_finish(0)

</stderr_txt>
]]>

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