Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:14:33 (7182): wrapper (7.7.26015): starting
03:14:33 (7182): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 03:14:33] Arguments: --nthreads 8
[2025-06-04 03:14:33] Threads: 8
[2025-06-04 03:14:33] Checking for CVMFS
[2025-06-04 03:14:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 03:14:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 03:14:35] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 03:14:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 03:14:36] 2.11.2.0 15980 32547 93360 146762 3 112 22925606 25165824 4281 130560 0 16906167 99.829 18297687 1948 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 03:14:36] CVMFS is ok
[2025-06-04 03:14:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 03:14:36] Checking for apptainer binary...
[2025-06-04 03:14:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 03:14:36] Running /usr/bin/apptainer --version
[2025-06-04 03:14:36] apptainer version 1.3.2-1.el7
[2025-06-04 03:14:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 03:15:59] cg-vwn346.simple-grid.lan
[2025-06-04 03:15:59] apptainer works
[2025-06-04 03:15:59] Set ATHENA_PROC_NUMBER=8
[2025-06-04 03:15:59] Set ATHENA_CORE_NUMBER=8
[2025-06-04 03:15:59] Starting ATLAS job with PandaID=6677619562
[2025-06-04 03:15:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:19:16]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:19:16] 2025-06-04 05:19:02,119 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:19:16] 2025-06-04 05:19:02,119 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:19:16] 2025-06-04 05:19:02,119 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:19:16] 2025-06-04 05:19:02,120 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:19:16] 2025-06-04 05:19:02,124 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:19:16] 2025-06-04 05:19:02,125 | INFO     | sum of square deviations: 3675146117.0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,127 | INFO     | sum of deviations: 114359136553.5
[2025-06-04 07:19:16] 2025-06-04 05:19:02,131 | INFO     | mean x: 1749007339.5
[2025-06-04 07:19:16] 2025-06-04 05:19:02,131 | INFO     | mean y: 2421467.4254385964
[2025-06-04 07:19:16] 2025-06-04 05:19:02,131 | INFO     | -- intersect: -54421256613.223305
[2025-06-04 07:19:16] 2025-06-04 05:19:02,131 | INFO     | intersect: -54421256613.223305
[2025-06-04 07:19:16] 2025-06-04 05:19:02,132 | INFO     | chi2: 6.330376206915924
[2025-06-04 07:19:16] 2025-06-04 05:19:02,132 | INFO     | sum of square deviations: 3438620752.0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,134 | INFO     | sum of deviations: 111469259021.99998
[2025-06-04 07:19:16] 2025-06-04 05:19:02,134 | INFO     | mean x: 1749007187.0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,134 | INFO     | mean y: 2419603.8295964124
[2025-06-04 07:19:16] 2025-06-04 05:19:02,134 | INFO     | -- intersect: -56694887025.76832
[2025-06-04 07:19:16] 2025-06-04 05:19:02,134 | INFO     | intersect: -56694887025.76832
[2025-06-04 07:19:16] 2025-06-04 05:19:02,135 | INFO     | chi2: 6.341713198603391
[2025-06-04 07:19:16] 2025-06-04 05:19:02,135 | INFO     | current chi2=6.341713198603391 (change=-0.17908875107741032 %)
[2025-06-04 07:19:16] 2025-06-04 05:19:02,135 | INFO     | right removable region: 222
[2025-06-04 07:19:16] 2025-06-04 05:19:02,135 | INFO     | sum of square deviations: 3438620752.0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,137 | INFO     | sum of deviations: 36214532948.0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,137 | INFO     | mean x: 1749007492.0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,138 | INFO     | mean y: 2471807.995515695
[2025-06-04 07:19:16] 2025-06-04 05:19:02,138 | INFO     | -- intersect: -18417555875.631065
[2025-06-04 07:19:16] 2025-06-04 05:19:02,138 | INFO     | intersect: -18417555875.631065
[2025-06-04 07:19:16] 2025-06-04 05:19:02,138 | INFO     | chi2: 1.4739984575845557
[2025-06-04 07:19:16] 2025-06-04 05:19:02,138 | INFO     | current chi2=1.4739984575845557 (change=76.71546825330515 %)
[2025-06-04 07:19:16] 2025-06-04 05:19:02,139 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 07:19:16] 2025-06-04 05:19:02,140 | INFO     | sum of deviations: -2360692374.9999976
[2025-06-04 07:19:16] 2025-06-04 05:19:02,141 | INFO     | mean x: 1749007644.5
[2025-06-04 07:19:16] 2025-06-04 05:19:02,141 | INFO     | mean y: 2497651.5321100918
[2025-06-04 07:19:16] 2025-06-04 05:19:02,141 | INFO     | -- intersect: 1287761638.1434271
[2025-06-04 07:19:16] 2025-06-04 05:19:02,141 | INFO     | intersect: 1287761638.1434271
[2025-06-04 07:19:16] 2025-06-04 05:19:02,141 | INFO     | chi2: 0.08416861694623039
[2025-06-04 07:19:16] 2025-06-04 05:19:02,142 | INFO     | current chi2=0.08416861694623039 (change=94.28977577872384 %)
[2025-06-04 07:19:16] 2025-06-04 05:19:02,142 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,144 | INFO     | sum of deviations: -3864464435.9999986
[2025-06-04 07:19:16] 2025-06-04 05:19:02,144 | INFO     | mean x: 1749007797.0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,144 | INFO     | mean y: 2498682.892018779
[2025-06-04 07:19:16] 2025-06-04 05:19:02,144 | INFO     | -- intersect: 2258157439.365866
[2025-06-04 07:19:16] 2025-06-04 05:19:02,144 | INFO     | intersect: 2258157439.365866
[2025-06-04 07:19:16] 2025-06-04 05:19:02,145 | INFO     | chi2: 0.07038648998893499
[2025-06-04 07:19:16] 2025-06-04 05:19:02,145 | INFO     | current chi2=0.07038648998893499 (change=16.374424883445414 %)
[2025-06-04 07:19:16] 2025-06-04 05:19:02,145 | INFO     | left removable region: 30
[2025-06-04 07:19:16] 2025-06-04 05:19:02,145 | INFO     | sum of square deviations: 2194675568.0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,147 | INFO     | sum of deviations: 5665852233.5
[2025-06-04 07:19:16] 2025-06-04 05:19:02,147 | INFO     | mean x: 1749008071.5
[2025-06-04 07:19:16] 2025-06-04 05:19:02,147 | INFO     | mean y: 2490809.6302083335
[2025-06-04 07:19:16] 2025-06-04 05:19:02,147 | INFO     | -- intersect: -4512810418.855424
[2025-06-04 07:19:16] 2025-06-04 05:19:02,147 | INFO     | intersect: -4512810418.855424
[2025-06-04 07:19:16] 2025-06-04 05:19:02,148 | INFO     | chi2: 0.00035111454296335936
[2025-06-04 07:19:16] 2025-06-04 05:19:02,148 | INFO     | -- intersect: -4512810418.855424
[2025-06-04 07:19:16] 2025-06-04 05:19:02,148 | INFO     | current memory leak: 2.58 B/s (using 192 data points, chi2=0.00)
[2025-06-04 07:19:16] 2025-06-04 05:19:02,149 | INFO     | ..............................
[2025-06-04 07:19:16] 2025-06-04 05:19:02,149 | INFO     | . Timing measurements:
[2025-06-04 07:19:16] 2025-06-04 05:19:02,149 | INFO     | . get job = 0 s
[2025-06-04 07:19:16] 2025-06-04 05:19:02,149 | INFO     | . initial setup = 6 s
[2025-06-04 07:19:16] 2025-06-04 05:19:02,149 | INFO     | . payload setup = 150 s
[2025-06-04 07:19:16] 2025-06-04 05:19:02,149 | INFO     | . stage-in = 0 s
[2025-06-04 07:19:16] 2025-06-04 05:19:02,149 | INFO     | . payload execution = 14041 s
[2025-06-04 07:19:16] 2025-06-04 05:19:02,150 | INFO     | . stage-out = 2 s
[2025-06-04 07:19:16] 2025-06-04 05:19:02,150 | INFO     | . log creation = 0 s
[2025-06-04 07:19:16] 2025-06-04 05:19:02,150 | INFO     | ..............................
[2025-06-04 07:19:16] 2025-06-04 05:19:02,289 | INFO     | 
[2025-06-04 07:19:16] 2025-06-04 05:19:02,289 | INFO     | job summary report
[2025-06-04 07:19:16] 2025-06-04 05:19:02,289 | INFO     | --------------------------------------------------
[2025-06-04 07:19:16] 2025-06-04 05:19:02,289 | INFO     | PanDA job id: 6677619562
[2025-06-04 07:19:16] 2025-06-04 05:19:02,289 | INFO     | task id: 45006595
[2025-06-04 07:19:16] 2025-06-04 05:19:02,290 | INFO     | errors: (none)
[2025-06-04 07:19:16] 2025-06-04 05:19:02,290 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:19:16] 2025-06-04 05:19:02,290 | INFO     | pilot state: finished 
[2025-06-04 07:19:16] 2025-06-04 05:19:02,290 | INFO     | transexitcode: 0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,290 | INFO     | exeerrorcode: 0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,290 | INFO     | exeerrordiag: 
[2025-06-04 07:19:16] 2025-06-04 05:19:02,290 | INFO     | exitcode: 0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,290 | INFO     | exitmsg: OK
[2025-06-04 07:19:16] 2025-06-04 05:19:02,291 | INFO     | cpuconsumptiontime: 50733 s
[2025-06-04 07:19:16] 2025-06-04 05:19:02,291 | INFO     | nevents: 400
[2025-06-04 07:19:16] 2025-06-04 05:19:02,291 | INFO     | neventsw: 0
[2025-06-04 07:19:16] 2025-06-04 05:19:02,291 | INFO     | pid: 17522
[2025-06-04 07:19:16] 2025-06-04 05:19:02,291 | INFO     | pgrp: 17522
[2025-06-04 07:19:16] 2025-06-04 05:19:02,291 | INFO     | corecount: 8
[2025-06-04 07:19:16] 2025-06-04 05:19:02,291 | INFO     | event service: False
[2025-06-04 07:19:16] 2025-06-04 05:19:02,291 | INFO     | sizes: {0: 2404958, 1: 2405213, 12: 2405213, 23: 2405241, 34: 2405269, 44: 2405297, 55: 2405453, 66: 2405481, 76: 2405509, 87: 2405799, 14196: 2435576, 14197: 2435
[2025-06-04 07:19:16] 2025-06-04 05:19:02,291 | INFO     | --------------------------------------------------
[2025-06-04 07:19:16] 2025-06-04 05:19:02,291 | INFO     | 
[2025-06-04 07:19:16] 2025-06-04 05:19:02,292 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-04 07:19:16] 2025-06-04 05:19:02,413 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,414 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,414 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,414 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,414 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,414 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,414 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,415 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,415 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:19:16] 2025-06-04 05:19:02,415 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,415 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:19:16] 2025-06-04 05:19:02,416 | INFO     | job 6677619562 has completed (purged errors)
[2025-06-04 07:19:16] 2025-06-04 05:19:02,416 | INFO     | overall cleanup function is called
[2025-06-04 07:19:16] 2025-06-04 05:19:03,426 | INFO     | --- collectZombieJob: --- 10, [17522]
[2025-06-04 07:19:16] 2025-06-04 05:19:03,426 | INFO     | zombie collector waiting for pid 17522
[2025-06-04 07:19:16] 2025-06-04 05:19:03,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:19:16] 2025-06-04 05:19:03,426 | INFO     | collected zombie processes
[2025-06-04 07:19:16] 2025-06-04 05:19:03,426 | INFO     | will attempt to kill all subprocesses of pid=17522
[2025-06-04 07:19:16] 2025-06-04 05:19:03,535 | INFO     | process IDs to be killed: [17522] (in reverse order)
[2025-06-04 07:19:16] 2025-06-04 05:19:03,623 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:19:16] 2025-06-04 05:19:03,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:19:16] 2025-06-04 05:19:03,627 | INFO     | did not find any defunct processes belonging to 17522
[2025-06-04 07:19:16] 2025-06-04 05:19:03,631 | INFO     | did not find any defunct processes belonging to 17522
[2025-06-04 07:19:16] 2025-06-04 05:19:03,631 | INFO     | ready for new job
[2025-06-04 07:19:16] 2025-06-04 05:19:03,632 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:19:16] 2025-06-04 05:19:03,634 | INFO     | **************************************
[2025-06-04 07:19:16] 2025-06-04 05:19:03,634 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:19:16] 2025-06-04 05:19:03,634 | INFO     | **************************************
[2025-06-04 07:19:16] 2025-06-04 05:19:03,634 | INFO     | 
[2025-06-04 07:19:16] 2025-06-04 05:19:03,635 | INFO     | pilot is running in a VM
[2025-06-04 07:19:16] 2025-06-04 05:19:03,635 | INFO     | architecture information:
[2025-06-04 07:19:16] 2025-06-04 05:19:03,635 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:19:16] 2025-06-04 05:19:03,662 | INFO     | cat /etc/os-release:
[2025-06-04 07:19:16] NAME="CentOS Linux"
[2025-06-04 07:19:16] VERSION="7 (Core)"
[2025-06-04 07:19:16] ID="centos"
[2025-06-04 07:19:16] ID_LIKE="rhel fedora"
[2025-06-04 07:19:16] VERSION_ID="7"
[2025-06-04 07:19:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:19:16] ANSI_COLOR="0;31"
[2025-06-04 07:19:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:19:16] HOME_URL="https://www.centos.org/"
[2025-06-04 07:19:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:19:16] 
[2025-06-04 07:19:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:19:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:19:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:19:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:19:16] 
[2025-06-04 07:19:16] 2025-06-04 05:19:03,662 | INFO     | **************************************
[2025-06-04 07:19:16] 2025-06-04 05:19:04,166 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-04 07:19:16] 2025-06-04 05:19:04,291 | INFO     | sufficient remaining disk space (496643342336 B)
[2025-06-04 07:19:16] 2025-06-04 05:19:04,291 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:19:16] 2025-06-04 05:19:04,291 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:19:16] 2025-06-04 05:19:04,291 | INFO     | update_server=False
[2025-06-04 07:19:16] 2025-06-04 05:19:04,291 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:19:16] 2025-06-04 05:19:04,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:19:16] 2025-06-04 05:19:04,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:19:16] 2025-06-04 05:19:04,293 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:19:16] 2025-06-04 05:19:04,414 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 07:19:16] 2025-06-04 05:19:04,414 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 07:19:16] 2025-06-04 05:19:04,414 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:19:16] 2025-06-04 05:19:04,414 | INFO     | will abort loop
[2025-06-04 07:19:16] 2025-06-04 05:19:04,720 | INFO     | all payload control threads have been joined
[2025-06-04 07:19:16] 2025-06-04 05:19:04,827 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:19:16] 2025-06-04 05:19:04,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:19:16] 2025-06-04 05:19:04,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:19:16] 2025-06-04 05:19:04,929 | INFO     | all job control threads have been joined
[2025-06-04 07:19:16] 2025-06-04 05:19:05,204 | INFO     | all data control threads have been joined
[2025-06-04 07:19:16] 2025-06-04 05:19:05,298 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:05,299 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:05,420 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:05,425 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:05,591 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:05,591 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:05,721 | INFO     | [payload] control thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:05,934 | INFO     | [job] control thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:06,233 | INFO     | [data] control thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:06,300 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:06,608 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:06,613 | INFO     | [job] validate thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:06,614 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:06,659 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:06,664 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:08,349 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:19:16] 2025-06-04 05:19:10,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140343196886848)>', '<ExcThread(monitor, started 140342969997056)>']
[2025-06-04 07:19:16] 2025-06-04 05:19:10,887 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:19:16] 2025-06-04 05:19:10,887 | INFO     | [monitor] control thread has ended
[2025-06-04 07:19:16] 2025-06-04 05:19:15,386 | INFO     | all workflow threads have been joined
[2025-06-04 07:19:16] 2025-06-04 05:19:15,386 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:19:16] 2025-06-04 05:19:15,386 | INFO     | traces error code: 0
[2025-06-04 07:19:16] 2025-06-04 05:19:15,387 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:19:16] 2025-06-04 05:19:15,688 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:19:16] 2025-06-04 05:19:15,759 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:19:16] 2025-06-04 05:19:15,767 [wrapper] pilotpid: 10888
[2025-06-04 07:19:16] 2025-06-04 05:19:15,783 [wrapper] Pilot exit status: 0
[2025-06-04 07:19:16] 2025-06-04 05:19:15,830 [wrapper] pandaids: 6677619562
[2025-06-04 07:19:16] 2025-06-04 05:19:15,898 [wrapper] cleanup supervisor_pilot 28385 10889
[2025-06-04 07:19:16] 2025-06-04 05:19:15,911 [wrapper] Test setup, not cleaning
[2025-06-04 07:19:16] 2025-06-04 05:19:15,937 [wrapper] apfmon messages muted
[2025-06-04 07:19:16] 2025-06-04 05:19:15,945 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:19:16] 2025-06-04 05:19:15,950 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:19:16]  *** Error codes and diagnostics ***
[2025-06-04 07:19:16]     "exeErrorCode": 0,
[2025-06-04 07:19:16]     "exeErrorDiag": "",
[2025-06-04 07:19:16]     "pilotErrorCode": 0,
[2025-06-04 07:19:16]     "pilotErrorDiag": "",
[2025-06-04 07:19:16]  *** Listing of results directory ***
[2025-06-04 07:19:16] total 396984
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc    495897 Jun  3 14:33 pilot3.tar.gz
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc      5111 Jun  3 14:43 queuedata.json
[2025-06-04 07:19:16] -rwx------. 1 boinc boinc     37140 Jun  3 14:44 runpilot2-wrapper.sh
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc       100 Jun  4 03:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:19:16] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 03:14 run_atlas
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc       105 Jun  4 03:14 job.xml
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc      6392 Jun  4 03:14 init_data.xml
[2025-06-04 07:19:16] -rw-r--r--. 2 boinc boinc 215602831 Jun  4 03:14 EVNT.45006593._001319.pool.root.1
[2025-06-04 07:19:16] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:14 start_atlas.sh
[2025-06-04 07:19:16] drwxrwx--x. 2 boinc boinc        68 Jun  4 03:14 shared
[2025-06-04 07:19:16] -rw-r--r--. 2 boinc boinc    508882 Jun  4 03:14 input.tar.gz
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc         0 Jun  4 03:14 boinc_lockfile
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc      2525 Jun  4 03:15 pandaJob.out
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc    986069 Jun  4 03:18 agis_schedconf.cvmfs.json
[2025-06-04 07:19:16] drwx------. 4 boinc boinc      4096 Jun  4 03:19 pilot3
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc 183847121 Jun  4 07:17 HITS.45006595._032782.pool.root.1
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc       531 Jun  4 07:18 boinc_task_state.xml
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc        95 Jun  4 07:18 pilot_heartbeat.json
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc      1017 Jun  4 07:18 memory_monitor_summary.json
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc   1603667 Jun  4 07:18 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc    391153 Jun  4 07:18 log.45006595._032782.job.log.tgz.1
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc      7690 Jun  4 07:19 heartbeat.json
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc      8192 Jun  4 07:19 boinc_mmap_file
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc        28 Jun  4 07:19 wrapper_checkpoint.txt
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc      4603 Jun  4 07:19 pilotlog.txt
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc   1231115 Jun  4 07:19 log.45006595._032782.job.log.1
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc       357 Jun  4 07:19 output.list
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc       620 Jun  4 07:19 runtime_log
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc   1638400 Jun  4 07:19 result.tar.gz
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc      8673 Jun  4 07:19 runtime_log.err
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc       656 Jun  4 07:19 82uLDmQBgg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmL9jKDmLzIctm.diag
[2025-06-04 07:19:16] -rw-r--r--. 1 boinc boinc     20511 Jun  4 07:19 stderr.txt
[2025-06-04 07:19:16] HITS file was successfully produced:
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc 183847121 Jun  4 07:17 shared/HITS.pool.root.1
[2025-06-04 07:19:16]  *** Contents of shared directory: ***
[2025-06-04 07:19:16] total 392208
[2025-06-04 07:19:16] -rw-r--r--. 2 boinc boinc 215602831 Jun  4 03:14 ATLAS.root_0
[2025-06-04 07:19:16] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:14 start_atlas.sh
[2025-06-04 07:19:16] -rw-r--r--. 2 boinc boinc    508882 Jun  4 03:14 input.tar.gz
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc 183847121 Jun  4 07:17 HITS.pool.root.1
[2025-06-04 07:19:16] -rw-------. 1 boinc boinc   1638400 Jun  4 07:19 result.tar.gz
07:19:18 (7182): run_atlas exited; CPU time 50931.881101
07:19:18 (7182): called boinc_finish(0)

</stderr_txt>
]]>

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