Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-03 13:34:37 (49142): Detected: vboxwrapper 26206
2025-06-03 13:34:37 (49142): Detected: BOINC client v8.0.3
2025-06-03 13:34:37 (49142): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-03 13:34:37 (49142): Successfully copied 'init_data.xml' to the shared directory.
2025-06-03 13:34:37 (49142): Create VM. (boinc_1751b5426a2ae70c, slot#16)
2025-06-03 13:34:37 (49142): Setting Memory Size for VM. (4800MB)
2025-06-03 13:34:37 (49142): Setting CPU Count for VM. (8)
2025-06-03 13:34:38 (49142): Setting Chipset Options for VM.
2025-06-03 13:34:38 (49142): Setting Graphics Controller Options for VM.
2025-06-03 13:34:38 (49142): Setting Boot Options for VM.
2025-06-03 13:34:38 (49142): Setting Network Configuration for NAT.
2025-06-03 13:34:38 (49142): Enabling VM Network Access.
2025-06-03 13:34:38 (49142): Disabling USB Support for VM.
2025-06-03 13:34:38 (49142): Disabling COM Port Support for VM.
2025-06-03 13:34:39 (49142): Disabling LPT Port Support for VM.
2025-06-03 13:34:39 (49142): Disabling Audio Support for VM.
2025-06-03 13:34:39 (49142): Disabling Clipboard Support for VM.
2025-06-03 13:34:39 (49142): Disabling Drag and Drop Support for VM.
2025-06-03 13:34:39 (49142): Adding storage controller(s) to VM.
2025-06-03 13:34:39 (49142): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-03 13:34:40 (49142): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-03 13:34:40 (49142): forwarding host port 35193 to guest port 80
2025-06-03 13:34:40 (49142): Enabling remote desktop for VM.
2025-06-03 13:34:40 (49142): Required extension pack not installed, remote desktop not enabled.
2025-06-03 13:34:40 (49142): Enabling shared directory for VM.
2025-06-03 13:34:40 (49142): Starting VM using VBoxManage interface. (boinc_1751b5426a2ae70c, slot#16)
2025-06-03 13:34:41 (49142): Successfully started VM. (PID = '49606')
2025-06-03 13:34:41 (49142): Reporting VM Process ID to BOINC.
2025-06-03 13:34:41 (49142): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-03 13:34:41 (49142): Guest Log: CPUID EDX: 0x178bfbff
2025-06-03 13:34:41 (49142): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-03 13:34:41 (49142): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-03 13:34:41 (49142): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-03 13:34:41 (49142): Detected: Web Application Enabled (http://localhost:35193)
2025-06-03 13:34:41 (49142): Preference change detected
2025-06-03 13:34:41 (49142): Setting CPU throttle for VM. (100%)
2025-06-03 13:34:42 (49142): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-03 13:34:43 (49142): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-03 13:34:43 (49142): Guest Log: BIOS: Booting from Hard Disk...
2025-06-03 13:34:46 (49142): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-03 13:34:46 (49142): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-03 13:34:46 (49142): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-03 13:34:55 (49142): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-03 13:34:55 (49142): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-03 13:35:06 (49142): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-03 13:35:06 (49142): Guest Log: 00:00:00.000116 main     Log opened 2025-06-03T18:35:04.224526000Z
2025-06-03 13:35:06 (49142): Guest Log: 00:00:00.000187 main     OS Product: Linux
2025-06-03 13:35:06 (49142): Guest Log: 00:00:00.000206 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-03 13:35:06 (49142): Guest Log: 00:00:00.000218 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-03 13:35:06 (49142): Guest Log: 00:00:00.000232 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-03 13:35:06 (49142): Guest Log: 00:00:00.000232 main     Process ID: 1375
2025-06-03 13:35:06 (49142): Guest Log: 00:00:00.000232 main     Package type: LINUX_64BITS_GENERIC
2025-06-03 13:35:06 (49142): Guest Log: 00:00:00.001144 main     5.2.32 r132073 started. Verbose level = 0
2025-06-03 13:35:19 (49142): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 13:35:39 (49142): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 13:35:43 (49142): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-03 13:35:43 (49142): Guest Log: [INFO] Mounting shared directory
2025-06-03 13:35:43 (49142): Guest Log: [INFO] Checking for init_data.xml
2025-06-03 13:38:10 (49142): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-03 13:38:10 (49142): Guest Log: [INFO] Detected branch: prod
2025-06-03 13:38:10 (49142): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-03 13:38:10 (49142): Guest Log: Copying input files
2025-06-03 13:38:12 (49142): Guest Log: Copied input files into RunAtlas.
2025-06-03 13:38:12 (49142): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-03 13:38:12 (49142): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-03 13:38:12 (49142): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-03 13:38:12 (49142): Guest Log: Further information can be found at the LHC@home message board.
2025-06-03 13:40:40 (49142): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-03 13:40:40 (49142): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-03 13:40:40 (49142): Guest Log: 2.6.3.0 1699 3 30176 146752 4 1 3117617 4096000 0 65024 0 0 n/a 1 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-03 13:40:41 (49142): Guest Log: copied the webapp to /var/www
2025-06-03 13:40:41 (49142): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-03 13:40:41 (49142): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-03 13:40:42 (49142): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-03 13:40:42 (49142): Guest Log:  *** Starting ATLAS job. (PandaID=6677675715 taskID=45006595) ***
2025-06-03 14:09:25 (49142): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 14:09:45 (49142): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 14:31:49 (49142): Guest Log:  *** Job finished ***
2025-06-03 14:31:49 (49142): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:30:56,296 | INFO     | [job] validate thread has finished
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:30:56,414 | INFO     | [job] create_data_payload thread has finished
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:30:59,765 | INFO     | [data] queue_monitor thread has finished
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:01,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139728898254656)>', '<ExcThread(monitor, started 139728087144192)>']
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:02,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:02,066 | INFO     | [monitor] control thread has ended
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,399 | INFO     | all workflow threads have been joined
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,400 | INFO     | end of generic workflow (traces error code: 0)
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,400 | INFO     | traces error code: 0
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,400 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,689 [wrapper] ==== pilot stdout END ====
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,692 [wrapper] ==== wrapper stdout RESUME ====
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,695 [wrapper] pilotpid: 6140
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,698 [wrapper] Pilot exit status: 0
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,754 [wrapper] pandaids: 6677675715
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,776 [wrapper] cleanup supervisor_pilot 24088 6141
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,779 [wrapper] Test setup, not cleaning
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,782 [wrapper] apfmon messages muted
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,785 [wrapper] ==== wrapper stdout END ====
2025-06-03 14:31:49 (49142): Guest Log: 2025-06-03 19:31:06,788 [wrapper] ==== wrapper stderr END ====
2025-06-03 14:31:49 (49142): Guest Log:  *** Error codes and diagnostics ***
2025-06-03 14:31:49 (49142): Guest Log:     "exeErrorCode": 0,
2025-06-03 14:31:49 (49142): Guest Log:     "exeErrorDiag": "",
2025-06-03 14:31:49 (49142): Guest Log:     "pilotErrorCode": 0,
2025-06-03 14:31:49 (49142): Guest Log:     "pilotErrorDiag": "",
2025-06-03 14:31:49 (49142): Guest Log:  *** Listing of results directory ***
2025-06-03 14:31:49 (49142): Guest Log: total 181720
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 14:52 pilot3.tar.gz
2025-06-03 14:31:49 (49142): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 14:52 runpilot2-wrapper.sh
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 14:52 queuedata.json
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 atlas atlas     15093 Jun  3 18:37 start_atlas.sh
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 atlas atlas    508870 Jun  3 18:37 input.tar.gz
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 atlas atlas      8006 Jun  3 18:37 init_data.xml
2025-06-03 14:31:49 (49142): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  3 18:37 EVNT.45006593._001447.pool.root.1 -> /data/./ATLAS.root_0
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  3 18:40 pandaJob.out
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas    986893 Jun  3 18:44 agis_schedconf.cvmfs.json
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  3 18:44 agis_ddmendpoints.agis.ALL.json
2025-06-03 14:31:49 (49142): Guest Log: drwx------. 4 atlas atlas      4096 Jun  3 18:44 pilot3
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas 181227999 Jun  3 19:25 HITS.45006595._036015.pool.root.1
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas      1028 Jun  3 19:26 memory_monitor_summary.json
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas    280902 Jun  3 19:26 log.45006595._036015.job.log.tgz.1
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas      7677 Jun  3 19:30 heartbeat.json
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas        95 Jun  3 19:30 pilot_heartbeat.json
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  3 19:31 pilotlog.txt
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas    262599 Jun  3 19:31 log.45006595._036015.job.log.1
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas       357 Jun  3 19:31 output.list
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  3 19:31 runtime_log
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas    563200 Jun  3 19:31 result.tar.gz
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 atlas atlas      8606 Jun  3 19:31 runtime_log.err
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas       659 Jun  3 19:31 f5OKDm7Aig7n9Rq4apOajLDm4fhM0noT9bVof3QYDmAzYKDmi7Gpcn.diag
2025-06-03 14:31:49 (49142): Guest Log: Looking for outputfile HITS.45006595._036015.pool.root.1
2025-06-03 14:31:49 (49142): Guest Log: HITS file was successfully produced
2025-06-03 14:31:49 (49142): Guest Log: -rw-------. 1 atlas atlas 181227999 Jun  3 19:25 /home/atlas/RunAtlas/HITS.45006595._036015.pool.root.1
2025-06-03 14:31:49 (49142): Guest Log: Successfully finished the ATLAS job!
2025-06-03 14:31:49 (49142): Guest Log: Copying the results back to the shared directory!
2025-06-03 14:31:49 (49142): Guest Log:  *** Contents of shared directory: ***
2025-06-03 14:31:49 (49142): Guest Log: total 210588
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 root root 214539274 Jun  3 18:34 ATLAS.root_0
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 root root      8006 Jun  3 18:34 init_data.xml
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 root root    508870 Jun  3 18:34 input.tar.gz
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 root root    563200 Jun  3  2025 result.tar.gz
2025-06-03 14:31:49 (49142): Guest Log: -rw-r--r--. 1 root root     15093 Jun  3 18:34 start_atlas.sh
2025-06-03 14:31:49 (49142): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-03 14:31:49 (49142): VM Completion File Detected.
2025-06-03 14:31:49 (49142): Powering off VM.
2025-06-03 14:31:50 (49142): Successfully stopped VM.
2025-06-03 14:31:50 (49142): Deregistering VM. (boinc_1751b5426a2ae70c, slot#16)
2025-06-03 14:31:50 (49142): Removing network bandwidth throttle group from VM.
2025-06-03 14:31:50 (49142): Removing VM from VirtualBox.
14:31:55 (49142): called boinc_finish(0)

</stderr_txt>
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