Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:24:23 (21536): wrapper (7.7.26015): starting
03:24:23 (21536): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 03:24:23] Arguments: --nthreads 8
[2025-06-04 03:24:23] Threads: 8
[2025-06-04 03:24:23] Checking for CVMFS
[2025-06-04 03:24:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 03:24:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 03:24:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 03:24:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 03:24:26] 2.11.2.0 29611 32532 95436 146762 2 111 16794259 25165825 4293 130560 0 16535574 99.820 19136774 2190 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 03:24:26] CVMFS is ok
[2025-06-04 03:24:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 03:24:26] Checking for apptainer binary...
[2025-06-04 03:24:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 03:24:26] Running /usr/bin/apptainer --version
[2025-06-04 03:24:27] apptainer version 1.3.2-1.el7
[2025-06-04 03:24:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 03:35:04] cg-vwn406.simple-grid.lan
[2025-06-04 03:35:04] apptainer works
[2025-06-04 03:35:04] Set ATHENA_PROC_NUMBER=8
[2025-06-04 03:35:04] Set ATHENA_CORE_NUMBER=8
[2025-06-04 03:35:04] Starting ATLAS job with PandaID=6677675425
[2025-06-04 03:35:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:47:24]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:47:24] 2025-06-04 05:38:07,668 | INFO     | extracted standard info from prmon json
[2025-06-04 11:47:24] 2025-06-04 05:38:07,668 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:47:24] 2025-06-04 05:38:07,668 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:47:24] 2025-06-04 05:38:07,669 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:47:24] 2025-06-04 05:38:07,669 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:47:24] 2025-06-04 05:38:07,674 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:47:24] 2025-06-04 05:38:07,674 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,676 | INFO     | sum of deviations: 71393533739.00002
[2025-06-04 11:47:24] 2025-06-04 05:38:07,676 | INFO     | mean x: 1749008455.0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,676 | INFO     | mean y: 2442987.4449339206
[2025-06-04 11:47:24] 2025-06-04 05:38:07,676 | INFO     | -- intersect: -34424877323.54526
[2025-06-04 11:47:24] 2025-06-04 05:38:07,677 | INFO     | intersect: -34424877323.54526
[2025-06-04 11:47:24] 2025-06-04 05:38:07,677 | INFO     | chi2: 6.974185223268554
[2025-06-04 11:47:24] 2025-06-04 05:38:07,677 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 11:47:24] 2025-06-04 05:38:07,679 | INFO     | sum of deviations: 84912348950.5
[2025-06-04 11:47:24] 2025-06-04 05:38:07,679 | INFO     | mean x: 1749008302.5
[2025-06-04 11:47:24] 2025-06-04 05:38:07,680 | INFO     | mean y: 2451607.2297297297
[2025-06-04 11:47:24] 2025-06-04 05:38:07,680 | INFO     | -- intersect: -43773358413.77937
[2025-06-04 11:47:24] 2025-06-04 05:38:07,680 | INFO     | intersect: -43773358413.77937
[2025-06-04 11:47:24] 2025-06-04 05:38:07,680 | INFO     | chi2: 6.2627336986442526
[2025-06-04 11:47:24] 2025-06-04 05:38:07,680 | INFO     | current chi2=6.2627336986442526 (change=10.201213501623483 %)
[2025-06-04 11:47:24] 2025-06-04 05:38:07,681 | INFO     | right removable region: 221
[2025-06-04 11:47:24] 2025-06-04 05:38:07,681 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 11:47:24] 2025-06-04 05:38:07,683 | INFO     | sum of deviations: -7084546710.000002
[2025-06-04 11:47:24] 2025-06-04 05:38:07,683 | INFO     | mean x: 1749008607.5
[2025-06-04 11:47:24] 2025-06-04 05:38:07,683 | INFO     | mean y: 2493994.279279279
[2025-06-04 11:47:24] 2025-06-04 05:38:07,683 | INFO     | -- intersect: 3654869988.787481
[2025-06-04 11:47:24] 2025-06-04 05:38:07,684 | INFO     | intersect: 3654869988.787481
[2025-06-04 11:47:24] 2025-06-04 05:38:07,684 | INFO     | chi2: 2.155894645723276
[2025-06-04 11:47:24] 2025-06-04 05:38:07,684 | INFO     | current chi2=2.155894645723276 (change=69.0875051822486 %)
[2025-06-04 11:47:24] 2025-06-04 05:38:07,685 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,686 | INFO     | sum of deviations: -43576007092.0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,687 | INFO     | mean x: 1749008760.0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,687 | INFO     | mean y: 2518672.267281106
[2025-06-04 11:47:24] 2025-06-04 05:38:07,687 | INFO     | -- intersect: 24056724068.263344
[2025-06-04 11:47:24] 2025-06-04 05:38:07,687 | INFO     | intersect: 24056724068.263344
[2025-06-04 11:47:24] 2025-06-04 05:38:07,687 | INFO     | chi2: 0.9171261383646779
[2025-06-04 11:47:24] 2025-06-04 05:38:07,688 | INFO     | current chi2=0.9171261383646779 (change=57.45960313116352 %)
[2025-06-04 11:47:24] 2025-06-04 05:38:07,688 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,690 | INFO     | sum of deviations: -49416106252.50001
[2025-06-04 11:47:24] 2025-06-04 05:38:07,690 | INFO     | mean x: 1749008912.5
[2025-06-04 11:47:24] 2025-06-04 05:38:07,690 | INFO     | mean y: 2522815.646226415
[2025-06-04 11:47:24] 2025-06-04 05:38:07,690 | INFO     | -- intersect: 29256451682.08901
[2025-06-04 11:47:24] 2025-06-04 05:38:07,690 | INFO     | intersect: 29256451682.08901
[2025-06-04 11:47:24] 2025-06-04 05:38:07,691 | INFO     | chi2: 0.8630494466757377
[2025-06-04 11:47:24] 2025-06-04 05:38:07,691 | INFO     | current chi2=0.8630494466757377 (change=5.896319974629016 %)
[2025-06-04 11:47:24] 2025-06-04 05:38:07,691 | INFO     | left removable region: 30
[2025-06-04 11:47:24] 2025-06-04 05:38:07,691 | INFO     | sum of square deviations: 2160561440.0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,695 | INFO     | sum of deviations: -26091190107.999996
[2025-06-04 11:47:24] 2025-06-04 05:38:07,695 | INFO     | mean x: 1749009187.0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,695 | INFO     | mean y: 2527504.3089005235
[2025-06-04 11:47:24] 2025-06-04 05:38:07,695 | INFO     | -- intersect: 21123764953.893074
[2025-06-04 11:47:24] 2025-06-04 05:38:07,695 | INFO     | intersect: 21123764953.893074
[2025-06-04 11:47:24] 2025-06-04 05:38:07,696 | INFO     | chi2: 0.06926949341232932
[2025-06-04 11:47:24] 2025-06-04 05:38:07,696 | INFO     | -- intersect: 21123764953.893074
[2025-06-04 11:47:24] 2025-06-04 05:38:07,696 | INFO     | current memory leak: -12.08 B/s (using 191 data points, chi2=0.07)
[2025-06-04 11:47:24] 2025-06-04 05:38:07,697 | INFO     | ..............................
[2025-06-04 11:47:24] 2025-06-04 05:38:07,697 | INFO     | . Timing measurements:
[2025-06-04 11:47:24] 2025-06-04 05:38:07,697 | INFO     | . get job = 0 s
[2025-06-04 11:47:24] 2025-06-04 05:38:07,697 | INFO     | . initial setup = 10 s
[2025-06-04 11:47:24] 2025-06-04 05:38:07,697 | INFO     | . payload setup = 145 s
[2025-06-04 11:47:24] 2025-06-04 05:38:07,697 | INFO     | . stage-in = 0 s
[2025-06-04 11:47:24] 2025-06-04 05:38:07,697 | INFO     | . payload execution = 13978 s
[2025-06-04 11:47:24] 2025-06-04 05:38:07,697 | INFO     | . stage-out = 4 s
[2025-06-04 11:47:24] 2025-06-04 05:38:07,697 | INFO     | . log creation = 1 s
[2025-06-04 11:47:24] 2025-06-04 05:38:07,697 | INFO     | ..............................
[2025-06-04 11:47:24] 2025-06-04 05:38:07,861 | INFO     | 
[2025-06-04 11:47:24] 2025-06-04 05:38:07,862 | INFO     | job summary report
[2025-06-04 11:47:24] 2025-06-04 05:38:07,862 | INFO     | --------------------------------------------------
[2025-06-04 11:47:24] 2025-06-04 05:38:07,862 | INFO     | PanDA job id: 6677675425
[2025-06-04 11:47:24] 2025-06-04 05:38:07,862 | INFO     | task id: 45006595
[2025-06-04 11:47:24] 2025-06-04 05:38:07,862 | INFO     | errors: (none)
[2025-06-04 11:47:24] 2025-06-04 05:38:07,862 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:47:24] 2025-06-04 05:38:07,862 | INFO     | pilot state: finished 
[2025-06-04 11:47:24] 2025-06-04 05:38:07,862 | INFO     | transexitcode: 0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,862 | INFO     | exeerrorcode: 0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,863 | INFO     | exeerrordiag: 
[2025-06-04 11:47:24] 2025-06-04 05:38:07,863 | INFO     | exitcode: 0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,863 | INFO     | exitmsg: OK
[2025-06-04 11:47:24] 2025-06-04 05:38:07,863 | INFO     | cpuconsumptiontime: 50181 s
[2025-06-04 11:47:24] 2025-06-04 05:38:07,863 | INFO     | nevents: 400
[2025-06-04 11:47:24] 2025-06-04 05:38:07,863 | INFO     | neventsw: 0
[2025-06-04 11:47:24] 2025-06-04 05:38:07,863 | INFO     | pid: 11908
[2025-06-04 11:47:24] 2025-06-04 05:38:07,863 | INFO     | pgrp: 11908
[2025-06-04 11:47:24] 2025-06-04 05:38:07,863 | INFO     | corecount: 8
[2025-06-04 11:47:24] 2025-06-04 05:38:07,863 | INFO     | event service: False
[2025-06-04 11:47:24] 2025-06-04 05:38:07,864 | INFO     | sizes: {0: 2404957, 1: 2405212, 2: 2405212, 12: 2405240, 23: 2405268, 34: 2405296, 45: 2405452, 55: 2405480, 66: 2405508, 77: 2405536, 88: 2406106, 98: 2406106, 14
[2025-06-04 11:47:24] 2025-06-04 05:38:07,864 | INFO     | --------------------------------------------------
[2025-06-04 11:47:24] 2025-06-04 05:38:07,864 | INFO     | 
[2025-06-04 11:47:24] 2025-06-04 05:38:07,864 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-04 11:47:24] 2025-06-04 05:38:08,422 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,422 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,422 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,423 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,423 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,423 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,423 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,423 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,423 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,423 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,423 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,423 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,423 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,423 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,424 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,424 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,424 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,424 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:47:24] 2025-06-04 05:38:08,424 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,424 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:47:24] 2025-06-04 05:38:08,424 | INFO     | job 6677675425 has completed (purged errors)
[2025-06-04 11:47:24] 2025-06-04 05:38:08,424 | INFO     | overall cleanup function is called
[2025-06-04 11:47:24] 2025-06-04 05:38:09,433 | INFO     | --- collectZombieJob: --- 10, [11908]
[2025-06-04 11:47:24] 2025-06-04 05:38:09,434 | INFO     | zombie collector waiting for pid 11908
[2025-06-04 11:47:24] 2025-06-04 05:38:09,434 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:47:24] 2025-06-04 05:38:09,434 | INFO     | collected zombie processes
[2025-06-04 11:47:24] 2025-06-04 05:38:09,434 | INFO     | will attempt to kill all subprocesses of pid=11908
[2025-06-04 11:47:24] 2025-06-04 05:38:09,552 | INFO     | process IDs to be killed: [11908] (in reverse order)
[2025-06-04 11:47:24] 2025-06-04 05:38:10,060 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:47:24] 2025-06-04 05:38:10,061 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:47:24] 2025-06-04 05:38:10,064 | INFO     | did not find any defunct processes belonging to 11908
[2025-06-04 11:47:24] 2025-06-04 05:38:10,067 | INFO     | did not find any defunct processes belonging to 11908
[2025-06-04 11:47:24] 2025-06-04 05:38:10,068 | INFO     | ready for new job
[2025-06-04 11:47:24] 2025-06-04 05:38:10,068 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:47:24] 2025-06-04 05:38:10,070 | INFO     | **************************************
[2025-06-04 11:47:24] 2025-06-04 05:38:10,070 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:47:24] 2025-06-04 05:38:10,070 | INFO     | **************************************
[2025-06-04 11:47:24] 2025-06-04 05:38:10,070 | INFO     | 
[2025-06-04 11:47:24] 2025-06-04 05:38:10,071 | INFO     | pilot is running in a VM
[2025-06-04 11:47:24] 2025-06-04 05:38:10,071 | INFO     | architecture information:
[2025-06-04 11:47:24] 2025-06-04 05:38:10,072 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:47:24] 2025-06-04 05:38:10,203 | INFO     | cat /etc/os-release:
[2025-06-04 11:47:24] NAME="CentOS Linux"
[2025-06-04 11:47:24] VERSION="7 (Core)"
[2025-06-04 11:47:24] ID="centos"
[2025-06-04 11:47:24] ID_LIKE="rhel fedora"
[2025-06-04 11:47:24] VERSION_ID="7"
[2025-06-04 11:47:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:47:24] ANSI_COLOR="0;31"
[2025-06-04 11:47:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:47:24] HOME_URL="https://www.centos.org/"
[2025-06-04 11:47:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:47:24] 
[2025-06-04 11:47:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:47:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:47:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:47:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:47:24] 
[2025-06-04 11:47:24] 2025-06-04 05:38:10,203 | INFO     | **************************************
[2025-06-04 11:47:24] 2025-06-04 05:38:10,707 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-04 11:47:24] 2025-06-04 05:38:11,012 | INFO     | sufficient remaining disk space (496574136320 B)
[2025-06-04 11:47:24] 2025-06-04 05:38:11,013 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:47:24] 2025-06-04 05:38:11,013 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:47:24] 2025-06-04 05:38:11,013 | INFO     | update_server=False
[2025-06-04 11:47:24] 2025-06-04 05:38:11,013 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:47:24] 2025-06-04 05:38:11,013 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:47:24] 2025-06-04 05:38:11,019 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:47:24] 2025-06-04 05:38:11,020 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:47:24] 2025-06-04 05:38:11,020 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:47:24] 2025-06-04 05:38:11,020 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:47:24] 2025-06-04 05:38:11,293 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:47:24] 2025-06-04 05:38:11,513 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:47:24] 2025-06-04 05:38:11,514 | INFO     | aborting loop
[2025-06-04 11:47:24] 2025-06-04 05:38:11,549 | INFO     | all payload control threads have been joined
[2025-06-04 11:47:24] 2025-06-04 05:38:11,563 | INFO     | all job control threads have been joined
[2025-06-04 11:47:24] 2025-06-04 05:38:11,995 | INFO     | all data control threads have been joined
[2025-06-04 11:47:24] 2025-06-04 05:38:12,019 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:12,039 | INFO     | [job] validate thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:12,053 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:12,445 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:12,520 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:12,541 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:12,556 | INFO     | [payload] control thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:12,569 | INFO     | [job] control thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:12,763 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:12,879 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:47:24] 2025-06-04 05:38:12,927 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:12,928 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:13,000 | INFO     | [data] control thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:13,019 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:13,591 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:13,885 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:15,303 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:47:24] 2025-06-04 05:38:15,430 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140060415346496)>', '<ExcThread(monitor, started 140059621717760)>']
[2025-06-04 11:47:24] 2025-06-04 05:38:16,050 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:47:24] 2025-06-04 05:38:16,051 | INFO     | [monitor] control thread has ended
[2025-06-04 11:47:24] 2025-06-04 05:38:20,456 | INFO     | all workflow threads have been joined
[2025-06-04 11:47:24] 2025-06-04 05:38:20,457 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:47:24] 2025-06-04 05:38:20,457 | INFO     | traces error code: 0
[2025-06-04 11:47:24] 2025-06-04 05:38:20,457 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:47:24] 2025-06-04 05:38:20,862 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:47:24] 2025-06-04 05:38:20,995 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:47:24] 2025-06-04 05:38:21,089 [wrapper] pilotpid: 30639
[2025-06-04 11:47:24] 2025-06-04 05:38:21,190 [wrapper] Pilot exit status: 0
[2025-06-04 11:47:24] 2025-06-04 05:38:21,675 [wrapper] pandaids: 6677675425
[2025-06-04 11:47:24] 2025-06-04 05:38:22,313 [wrapper] cleanup supervisor_pilot 13800 30640
[2025-06-04 11:47:24] 2025-06-04 05:38:22,402 [wrapper] Test setup, not cleaning
[2025-06-04 11:47:24] 2025-06-04 05:38:22,476 [wrapper] apfmon messages muted
[2025-06-04 11:47:24] 2025-06-04 05:38:22,556 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:47:24] 2025-06-04 05:38:22,657 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:47:24]  *** Error codes and diagnostics ***
[2025-06-04 11:47:24]     "exeErrorCode": 0,
[2025-06-04 11:47:24]     "exeErrorDiag": "",
[2025-06-04 11:47:24]     "pilotErrorCode": 0,
[2025-06-04 11:47:24]     "pilotErrorDiag": "",
[2025-06-04 11:47:24]  *** Listing of results directory ***
[2025-06-04 11:47:24] total 386904
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc    495897 Jun  3 16:31 pilot3.tar.gz
[2025-06-04 11:47:24] -rwx------. 1 boinc boinc     37140 Jun  3 16:41 runpilot2-wrapper.sh
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc      5111 Jun  3 16:41 queuedata.json
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc       100 Jun  4 03:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:47:24] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 03:24 run_atlas
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc       105 Jun  4 03:24 job.xml
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc      6392 Jun  4 03:24 init_data.xml
[2025-06-04 11:47:24] -rw-r--r--. 2 boinc boinc 214877676 Jun  4 03:24 EVNT.45006593._001438.pool.root.1
[2025-06-04 11:47:24] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:24 start_atlas.sh
[2025-06-04 11:47:24] drwxrwx--x. 2 boinc boinc        68 Jun  4 03:24 shared
[2025-06-04 11:47:24] -rw-r--r--. 2 boinc boinc    508878 Jun  4 03:24 input.tar.gz
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc         0 Jun  4 03:24 boinc_lockfile
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc      2525 Jun  4 03:35 pandaJob.out
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc    986069 Jun  4 03:37 agis_schedconf.cvmfs.json
[2025-06-04 11:47:24] drwx------. 4 boinc boinc      4096 Jun  4 03:38 pilot3
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc 174266184 Jun  4 07:35 HITS.45006595._035782.pool.root.1
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc       531 Jun  4 07:35 boinc_task_state.xml
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc      1018 Jun  4 07:36 memory_monitor_summary.json
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc   1603667 Jun  4 07:36 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc    378710 Jun  4 07:36 log.45006595._035782.job.log.tgz.1
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc        95 Jun  4 07:37 pilot_heartbeat.json
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc      7694 Jun  4 07:38 heartbeat.json
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc      4539 Jun  4 07:38 pilotlog.txt
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc   1232074 Jun  4 07:38 log.45006595._035782.job.log.1
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc       357 Jun  4 07:38 output.list
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc       620 Jun  4 07:38 runtime_log
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc   1628160 Jun  4 07:38 result.tar.gz
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc      8659 Jun  4 07:38 runtime_log.err
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc       657 Jun  4 07:38 1n9KDm00hg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCbkKDm9YfKAo.diag
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc      8192 Jun  4 11:47 boinc_mmap_file
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc        28 Jun  4 11:47 wrapper_checkpoint.txt
[2025-06-04 11:47:24] -rw-r--r--. 1 boinc boinc     20513 Jun  4 11:47 stderr.txt
[2025-06-04 11:47:24] HITS file was successfully produced:
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc 174266184 Jun  4 07:35 shared/HITS.pool.root.1
[2025-06-04 11:47:24]  *** Contents of shared directory: ***
[2025-06-04 11:47:24] total 382136
[2025-06-04 11:47:24] -rw-r--r--. 2 boinc boinc 214877676 Jun  4 03:24 ATLAS.root_0
[2025-06-04 11:47:24] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:24 start_atlas.sh
[2025-06-04 11:47:24] -rw-r--r--. 2 boinc boinc    508878 Jun  4 03:24 input.tar.gz
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc 174266184 Jun  4 07:35 HITS.pool.root.1
[2025-06-04 11:47:24] -rw-------. 1 boinc boinc   1628160 Jun  4 07:38 result.tar.gz
11:47:26 (21536): run_atlas exited; CPU time 50374.039690
11:47:26 (21536): called boinc_finish(0)

</stderr_txt>
]]>

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