Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:03:21 (607505): wrapper (7.7.26015): starting
13:03:21 (607505): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 13:03:21] Arguments: --nthreads 8
[2025-06-03 13:03:21] Threads: 8
[2025-06-03 13:03:21] Checking for CVMFS
[2025-06-03 13:03:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 13:03:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 13:03:21] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 13:03:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 13:03:21] 2.12.6.0 861369 31634 437716 146749 2 187 23374727 40960000 4672 16776704 0 143476559 99.647 140112469 26156 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 13:03:21] CVMFS is ok
[2025-06-03 13:03:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 13:03:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 13:03:21] Further information can be found at the LHC@home message board.
[2025-06-03 13:03:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 13:03:21] Checking for apptainer binary...
[2025-06-03 13:03:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 13:03:21] Running /usr/bin/apptainer --version
[2025-06-03 13:03:21] apptainer version 1.4.1-1.el9
[2025-06-03 13:03:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 13:03:21] c7-13-33.aglt2.org
[2025-06-03 13:03:21] apptainer works
[2025-06-03 13:03:21] Set ATHENA_PROC_NUMBER=8
[2025-06-03 13:03:21] Set ATHENA_CORE_NUMBER=8
[2025-06-03 13:03:21] Starting ATLAS job with PandaID=6677577223
[2025-06-03 13:03:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 14:13:18]  *** The last 200 lines of the pilot log: ***
[2025-06-03 14:13:18]  is_altstaged=None
[2025-06-03 14:13:18]  is_tar=False
[2025-06-03 14:13:18]  lfn=log.45006595._029020.job.log.tgz.1
[2025-06-03 14:13:18]  mtime=0
[2025-06-03 14:13:18]  protocol_id=None
[2025-06-03 14:13:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 14:13:18]  replicas=None
[2025-06-03 14:13:18]  scope=mc23_13p6TeV
[2025-06-03 14:13:18]  status=None
[2025-06-03 14:13:18]  status_code=0
[2025-06-03 14:13:18]  storage_token=
[2025-06-03 14:13:18]  surl=/tmp/boinchome/slots/6/PanDA_Pilot-6677577223/log.45006595._029020.job.log.tgz.1
[2025-06-03 14:13:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/74/log.45006595._029020.job.log.tgz.1
[2025-06-03 14:13:18]  workdir=None
[2025-06-03 14:13:18] ]
[2025-06-03 14:13:18] 2025-06-03 18:12:51,647 | INFO     | transferring file log.45006595._029020.job.log.tgz.1 from /tmp/boinchome/slots/6/PanDA_Pilot-6677577223/log.45006595._029020.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 14:13:18] 2025-06-03 18:12:51,648 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/6/PanDA_Pilot-6677577223/log.45006595._029020.job.log.tgz.1 /tmp/boinchome/slots/6/log.45006595._029020.job
[2025-06-03 14:13:18] 2025-06-03 18:12:51,671 | INFO     | adding to output.list: log.45006595._029020.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/74/log.45006595._029020.job.log.tg
[2025-06-03 14:13:18] 2025-06-03 18:12:51,672 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 14:13:18] 2025-06-03 18:12:51,672 | INFO     | summary of transferred files:
[2025-06-03 14:13:18] 2025-06-03 18:12:51,672 | INFO     |  -- lfn=log.45006595._029020.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 14:13:18] 2025-06-03 18:12:51,672 | INFO     | stage-out finished correctly
[2025-06-03 14:13:18] 2025-06-03 18:12:51,758 | INFO     | number of running child processes to parent process 623769: 1
[2025-06-03 14:13:18] 2025-06-03 18:12:51,758 | INFO     | maximum number of monitored processes: 6
[2025-06-03 14:13:18] 2025-06-03 18:12:53,113 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 14:13:18] 2025-06-03 18:12:54,264 | INFO     | monitor loop #305: job 0:6677577223 is in state 'finished'
[2025-06-03 14:13:18] 2025-06-03 18:12:54,264 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 14:13:18] 2025-06-03 18:12:54,395 | INFO     | job 6677577223 has state=finished
[2025-06-03 14:13:18] 2025-06-03 18:12:54,396 | INFO     | preparing for final server update for job 6677577223 in state='finished'
[2025-06-03 14:13:18] 2025-06-03 18:12:54,396 | INFO     | this job has now completed (state=finished)
[2025-06-03 14:13:18] 2025-06-03 18:12:54,396 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 14:13:18] 2025-06-03 18:12:54,396 | INFO     | log transfer has been attempted: DONE
[2025-06-03 14:13:18] 2025-06-03 18:12:54,397 | INFO     | job 6677577223 has finished - writing final server update
[2025-06-03 14:13:18] 2025-06-03 18:12:54,397 | INFO     | total number of processed events: 400 (read)
[2025-06-03 14:13:18] 2025-06-03 18:12:54,413 | INFO     | executing command: lscpu
[2025-06-03 14:13:18] 2025-06-03 18:12:54,496 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 14:13:18] 2025-06-03 18:12:56,767 | INFO     | monitor loop #306: job 0:6677577223 is in state 'finished'
[2025-06-03 14:13:18] 2025-06-03 18:12:56,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 14:13:18] 2025-06-03 18:12:58,563 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 14:13:18] 2025-06-03 18:12:58,563 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6677577223/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 14:13:18] 2025-06-03 18:12:58,564 | INFO     | extracted standard info from prmon json
[2025-06-03 14:13:18] 2025-06-03 18:12:58,564 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 14:13:18] 2025-06-03 18:12:58,564 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 14:13:18] 2025-06-03 18:12:58,565 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 14:13:18] 2025-06-03 18:12:58,565 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 14:13:18] 2025-06-03 18:12:58,566 | INFO     | fitting pss+swap vs Time
[2025-06-03 14:13:18] 2025-06-03 18:12:58,567 | INFO     | sum of square deviations: 70364110.0
[2025-06-03 14:13:18] 2025-06-03 18:12:58,567 | INFO     | sum of deviations: 7119818252.0
[2025-06-03 14:13:18] 2025-06-03 18:12:58,567 | INFO     | mean x: 1748972374.0
[2025-06-03 14:13:18] 2025-06-03 18:12:58,567 | INFO     | mean y: 2099517.0655737706
[2025-06-03 14:13:18] 2025-06-03 18:12:58,567 | INFO     | -- intersect: -176968310975.57007
[2025-06-03 14:13:18] 2025-06-03 18:12:58,567 | INFO     | intersect: -176968310975.57007
[2025-06-03 14:13:18] 2025-06-03 18:12:58,567 | INFO     | chi2: 0.8352854268451436
[2025-06-03 14:13:18] 2025-06-03 18:12:58,568 | INFO     | -- intersect: -176968310975.57007
[2025-06-03 14:13:18] 2025-06-03 18:12:58,568 | INFO     | current memory leak: 101.19 B/s (using 61 data points, chi2=0.84)
[2025-06-03 14:13:18] 2025-06-03 18:12:58,568 | INFO     | ..............................
[2025-06-03 14:13:18] 2025-06-03 18:12:58,568 | INFO     | . Timing measurements:
[2025-06-03 14:13:18] 2025-06-03 18:12:58,568 | INFO     | . get job = 0 s
[2025-06-03 14:13:18] 2025-06-03 18:12:58,568 | INFO     | . initial setup = 2 s
[2025-06-03 14:13:18] 2025-06-03 18:12:58,568 | INFO     | . payload setup = 6 s
[2025-06-03 14:13:18] 2025-06-03 18:12:58,568 | INFO     | . stage-in = 0 s
[2025-06-03 14:13:18] 2025-06-03 18:12:58,568 | INFO     | . payload execution = 4133 s
[2025-06-03 14:13:18] 2025-06-03 18:12:58,569 | INFO     | . stage-out = 0 s
[2025-06-03 14:13:18] 2025-06-03 18:12:58,569 | INFO     | . log creation = 0 s
[2025-06-03 14:13:18] 2025-06-03 18:12:58,569 | INFO     | ..............................
[2025-06-03 14:13:18] 2025-06-03 18:12:58,653 | INFO     | 
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | job summary report
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | --------------------------------------------------
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | PanDA job id: 6677577223
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | task id: 45006595
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | errors: (none)
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | pilot state: finished 
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | transexitcode: 0
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | exeerrorcode: 0
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | exeerrordiag: 
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | exitcode: 0
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | exitmsg: OK
[2025-06-03 14:13:18] 2025-06-03 18:12:58,654 | INFO     | cpuconsumptiontime: 27769 s
[2025-06-03 14:13:18] 2025-06-03 18:12:58,655 | INFO     | nevents: 400
[2025-06-03 14:13:18] 2025-06-03 18:12:58,655 | INFO     | neventsw: 0
[2025-06-03 14:13:18] 2025-06-03 18:12:58,655 | INFO     | pid: 623769
[2025-06-03 14:13:18] 2025-06-03 18:12:58,655 | INFO     | pgrp: 623769
[2025-06-03 14:13:18] 2025-06-03 18:12:58,655 | INFO     | corecount: 8
[2025-06-03 14:13:18] 2025-06-03 18:12:58,655 | INFO     | event service: False
[2025-06-03 14:13:18] 2025-06-03 18:12:58,655 | INFO     | sizes: {0: 2405184, 5: 2405390, 11: 2405446, 4143: 2431328, 4144: 2431327, 4145: 2440352, 4146: 2440536, 4152: 2440706}
[2025-06-03 14:13:18] 2025-06-03 18:12:58,655 | INFO     | --------------------------------------------------
[2025-06-03 14:13:18] 2025-06-03 18:12:58,655 | INFO     | 
[2025-06-03 14:13:18] 2025-06-03 18:12:58,655 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-06-03 14:13:18] 2025-06-03 18:12:58,678 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,678 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,679 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,680 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 14:13:18] 2025-06-03 18:12:58,680 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,680 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 14:13:18] 2025-06-03 18:12:58,680 | INFO     | job 6677577223 has completed (purged errors)
[2025-06-03 14:13:18] 2025-06-03 18:12:58,680 | INFO     | overall cleanup function is called
[2025-06-03 14:13:18] 2025-06-03 18:12:59,689 | INFO     | --- collectZombieJob: --- 10, [623769]
[2025-06-03 14:13:18] 2025-06-03 18:12:59,689 | INFO     | zombie collector waiting for pid 623769
[2025-06-03 14:13:18] 2025-06-03 18:12:59,689 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 14:13:18] 2025-06-03 18:12:59,689 | INFO     | collected zombie processes
[2025-06-03 14:13:18] 2025-06-03 18:12:59,689 | INFO     | will attempt to kill all subprocesses of pid=623769
[2025-06-03 14:13:18] 2025-06-03 18:13:00,060 | INFO     | process IDs to be killed: [623769] (in reverse order)
[2025-06-03 14:13:18] 2025-06-03 18:13:00,189 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 14:13:18] 2025-06-03 18:13:00,189 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 14:13:18] 2025-06-03 18:13:00,207 | INFO     | did not find any defunct processes belonging to 623769
[2025-06-03 14:13:18] 2025-06-03 18:13:00,220 | INFO     | did not find any defunct processes belonging to 623769
[2025-06-03 14:13:18] 2025-06-03 18:13:00,220 | INFO     | ready for new job
[2025-06-03 14:13:18] 2025-06-03 18:13:00,220 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 14:13:18] 2025-06-03 18:13:00,222 | INFO     | **************************************
[2025-06-03 14:13:18] 2025-06-03 18:13:00,222 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 14:13:18] 2025-06-03 18:13:00,222 | INFO     | **************************************
[2025-06-03 14:13:18] 2025-06-03 18:13:00,222 | INFO     | 
[2025-06-03 14:13:18] 2025-06-03 18:13:00,239 | INFO     | architecture information:
[2025-06-03 14:13:18] 2025-06-03 18:13:00,239 | INFO     | executing command: cat /etc/os-release
[2025-06-03 14:13:18] 2025-06-03 18:13:00,254 | INFO     | cat /etc/os-release:
[2025-06-03 14:13:18] NAME="CentOS Linux"
[2025-06-03 14:13:18] VERSION="7 (Core)"
[2025-06-03 14:13:18] ID="centos"
[2025-06-03 14:13:18] ID_LIKE="rhel fedora"
[2025-06-03 14:13:18] VERSION_ID="7"
[2025-06-03 14:13:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 14:13:18] ANSI_COLOR="0;31"
[2025-06-03 14:13:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 14:13:18] HOME_URL="https://www.centos.org/"
[2025-06-03 14:13:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 14:13:18] 
[2025-06-03 14:13:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 14:13:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 14:13:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 14:13:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 14:13:18] 
[2025-06-03 14:13:18] 2025-06-03 18:13:00,254 | INFO     | **************************************
[2025-06-03 14:13:18] 2025-06-03 18:13:00,757 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-06-03 14:13:18] 2025-06-03 18:13:00,778 | INFO     | sufficient remaining disk space (82401296384 B)
[2025-06-03 14:13:18] 2025-06-03 18:13:00,778 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 14:13:18] 2025-06-03 18:13:00,778 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 14:13:18] 2025-06-03 18:13:00,778 | INFO     | update_server=False
[2025-06-03 14:13:18] 2025-06-03 18:13:00,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 14:13:18] 2025-06-03 18:13:00,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:13:18] 2025-06-03 18:13:00,780 | INFO     | aborting loop
[2025-06-03 14:13:18] 2025-06-03 18:13:01,082 | INFO     | all data control threads have been joined
[2025-06-03 14:13:18] 2025-06-03 18:13:01,180 | INFO     | all payload control threads have been joined
[2025-06-03 14:13:18] 2025-06-03 18:13:01,392 | INFO     | all job control threads have been joined
[2025-06-03 14:13:18] 2025-06-03 18:13:01,495 | INFO     | PID=613191 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 14:13:18] 2025-06-03 18:13:01,495 | INFO     | .. there are 14 such processes running
[2025-06-03 14:13:18] 2025-06-03 18:13:01,496 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 14:13:18] 2025-06-03 18:13:01,496 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 14:13:18] 2025-06-03 18:13:01,496 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 14:13:18] 2025-06-03 18:13:01,784 | INFO     | [job] job monitor thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:01,788 | INFO     | [job] retrieve thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:01,931 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:02,088 | INFO     | [data] control thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:02,184 | INFO     | [payload] control thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:02,260 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 14:13:18] 2025-06-03 18:13:02,377 | INFO     | [job] validate thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:02,396 | INFO     | [job] control thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:02,693 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:02,783 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:02,922 | INFO     | [payload] failed_post thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:02,966 | INFO     | [payload] validate_post thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:03,154 | INFO     | [data] copytool_in thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:03,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:13:18] 2025-06-03 18:13:03,704 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 14:13:18] 2025-06-03 18:13:04,266 | INFO     | [data] copytool_out thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:04,670 | INFO     | [job] queue monitor thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:07,710 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:10,850 | INFO     | job.realtimelogging is not enabled
[2025-06-03 14:13:18] 2025-06-03 18:13:11,852 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 14:13:18] 2025-06-03 18:13:13,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140542372095808)>', '<ExcThread(monitor, started 140541664687872)>']
[2025-06-03 14:13:18] 2025-06-03 18:13:13,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 14:13:18] 2025-06-03 18:13:13,559 | INFO     | [monitor] control thread has ended
[2025-06-03 14:13:18] 2025-06-03 18:13:18,082 | INFO     | all workflow threads have been joined
[2025-06-03 14:13:18] 2025-06-03 18:13:18,082 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 14:13:18] 2025-06-03 18:13:18,083 | INFO     | traces error code: 0
[2025-06-03 14:13:18] 2025-06-03 18:13:18,083 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 14:13:18] 2025-06-03 18:13:18,212 [wrapper] ==== pilot stdout END ====
[2025-06-03 14:13:18] 2025-06-03 18:13:18,216 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 14:13:18] 2025-06-03 18:13:18,219 [wrapper] pilotpid: 613191
[2025-06-03 14:13:18] 2025-06-03 18:13:18,222 [wrapper] Pilot exit status: 0
[2025-06-03 14:13:18] 2025-06-03 18:13:18,236 [wrapper] pandaids: 6677577223
[2025-06-03 14:13:18] 2025-06-03 18:13:18,318 [wrapper] cleanup supervisor_pilot  886152 613192
[2025-06-03 14:13:18] 2025-06-03 18:13:18,323 [wrapper] Test setup, not cleaning
[2025-06-03 14:13:18] 2025-06-03 18:13:18,326 [wrapper] apfmon messages muted
[2025-06-03 14:13:18] 2025-06-03 18:13:18,329 [wrapper] ==== wrapper stdout END ====
[2025-06-03 14:13:18] 2025-06-03 18:13:18,332 [wrapper] ==== wrapper stderr END ====
[2025-06-03 14:13:18]  *** Error codes and diagnostics ***
[2025-06-03 14:13:18]     "exeErrorCode": 0,
[2025-06-03 14:13:18]     "exeErrorDiag": "",
[2025-06-03 14:13:18]     "pilotErrorCode": 0,
[2025-06-03 14:13:18]     "pilotErrorDiag": "",
[2025-06-03 14:13:18]  *** Listing of results directory ***
[2025-06-03 14:13:18] total 392976
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 06:30 pilot3.tar.gz
[2025-06-03 14:13:18] -rwx------. 1 boincer umatlas     37140 Jun  3 06:31 runpilot2-wrapper.sh
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 06:31 queuedata.json
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas       100 Jun  3 13:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 14:13:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 13:03 run_atlas
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas       105 Jun  3 13:03 job.xml
[2025-06-03 14:13:18] -rw-r--r--. 2 boincer umatlas 216318068 Jun  3 13:03 EVNT.45006593._001160.pool.root.1
[2025-06-03 14:13:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 13:03 start_atlas.sh
[2025-06-03 14:13:18] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 13:03 shared
[2025-06-03 14:13:18] -rw-r--r--. 2 boincer umatlas    508874 Jun  3 13:03 input.tar.gz
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas         0 Jun  3 13:03 boinc_lockfile
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 13:03 pandaJob.out
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas    983734 Jun  3 13:03 agis_schedconf.cvmfs.json
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas   1603667 Jun  3 13:03 agis_ddmendpoints.agis.ALL.json
[2025-06-03 14:13:18] drwx------. 4 boincer umatlas      4096 Jun  3 13:03 pilot3
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas      6898 Jun  3 14:09 init_data.xml
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas       529 Jun  3 14:12 boinc_task_state.xml
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas 180795409 Jun  3 14:12 HITS.45006595._029020.pool.root.1
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas      1026 Jun  3 14:12 memory_monitor_summary.json
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas        95 Jun  3 14:12 pilot_heartbeat.json
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas    309011 Jun  3 14:12 log.45006595._029020.job.log.tgz.1
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas      7685 Jun  3 14:12 heartbeat.json
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 14:13 boinc_mmap_file
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas        27 Jun  3 14:13 wrapper_checkpoint.txt
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas      4820 Jun  3 14:13 pilotlog.txt
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas    415499 Jun  3 14:13 log.45006595._029020.job.log.1
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas       357 Jun  3 14:13 output.list
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas       620 Jun  3 14:13 runtime_log
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas    747520 Jun  3 14:13 result.tar.gz
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas       651 Jun  3 14:13 ZMmLDmb6dg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmfJYKDmIf2M9n.diag
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas      8659 Jun  3 14:13 runtime_log.err
[2025-06-03 14:13:18] -rw-r--r--. 1 boincer umatlas     21431 Jun  3 14:13 stderr.txt
[2025-06-03 14:13:18] HITS file was successfully produced:
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas 180795409 Jun  3 14:12 shared/HITS.pool.root.1
[2025-06-03 14:13:18]  *** Contents of shared directory: ***
[2025-06-03 14:13:18] total 389068
[2025-06-03 14:13:18] -rw-r--r--. 2 boincer umatlas 216318068 Jun  3 13:03 ATLAS.root_0
[2025-06-03 14:13:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 13:03 start_atlas.sh
[2025-06-03 14:13:18] -rw-r--r--. 2 boincer umatlas    508874 Jun  3 13:03 input.tar.gz
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas 180795409 Jun  3 14:12 HITS.pool.root.1
[2025-06-03 14:13:18] -rw-------. 1 boincer umatlas    747520 Jun  3 14:13 result.tar.gz
14:13:20 (607505): run_atlas exited; CPU time 27833.556924
14:13:20 (607505): called boinc_finish(0)

</stderr_txt>
]]>

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