Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:55:07 (2207416): wrapper (7.7.26015): starting
12:55:07 (2207416): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 12:55:07] Arguments: --nthreads 8
[2025-06-03 12:55:07] Threads: 8
[2025-06-03 12:55:07] Checking for CVMFS
[2025-06-03 12:55:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 12:55:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 12:55:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 12:55:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 12:55:07] 2.12.6.0 907015 32205 404716 146749 3 201 19878570 25181184 4538 16776704 1 126828753 99.464 164371902 23024 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 12:55:07] CVMFS is ok
[2025-06-03 12:55:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 12:55:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 12:55:07] Further information can be found at the LHC@home message board.
[2025-06-03 12:55:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:55:07] Checking for apptainer binary...
[2025-06-03 12:55:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 12:55:07] Running /usr/bin/apptainer --version
[2025-06-03 12:55:07] apptainer version 1.4.1-1.el9
[2025-06-03 12:55:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:55:07] c-16-38.aglt2.org
[2025-06-03 12:55:07] apptainer works
[2025-06-03 12:55:07] Set ATHENA_PROC_NUMBER=8
[2025-06-03 12:55:07] Set ATHENA_CORE_NUMBER=8
[2025-06-03 12:55:07] Starting ATLAS job with PandaID=6677637435
[2025-06-03 12:55:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 14:37:01]  *** The last 200 lines of the pilot log: ***
[2025-06-03 14:37:01]  status=None
[2025-06-03 14:37:01]  status_code=0
[2025-06-03 14:37:01]  storage_token=
[2025-06-03 14:37:01]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6677637435/log.45006595._034730.job.log.tgz.1
[2025-06-03 14:37:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/40/log.45006595._034730.job.log.tgz.1
[2025-06-03 14:37:01]  workdir=None
[2025-06-03 14:37:01] ]
[2025-06-03 14:37:01] 2025-06-03 18:36:25,894 | INFO     | transferring file log.45006595._034730.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6677637435/log.45006595._034730.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 14:37:01] 2025-06-03 18:36:25,895 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6677637435/log.45006595._034730.job.log.tgz.1 /tmp/boinchome/slots/3/log.45006595._034730.job
[2025-06-03 14:37:01] 2025-06-03 18:36:26,012 | INFO     | adding to output.list: log.45006595._034730.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/40/log.45006595._034730.job.log.tg
[2025-06-03 14:37:01] 2025-06-03 18:36:26,013 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 14:37:01] 2025-06-03 18:36:26,013 | INFO     | summary of transferred files:
[2025-06-03 14:37:01] 2025-06-03 18:36:26,014 | INFO     |  -- lfn=log.45006595._034730.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 14:37:01] 2025-06-03 18:36:26,014 | INFO     | stage-out finished correctly
[2025-06-03 14:37:01] 2025-06-03 18:36:27,041 | WARNING  | process 2217698 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 14:37:01] 2025-06-03 18:36:27,042 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6677637435/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 14:37:01] 2025-06-03 18:36:28,039 | INFO     | number of running child processes to parent process 2217698: 1
[2025-06-03 14:37:01] 2025-06-03 18:36:28,039 | INFO     | maximum number of monitored processes: 6
[2025-06-03 14:37:01] 2025-06-03 18:36:29,577 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 14:37:01] 2025-06-03 18:36:30,545 | INFO     | monitor loop #432: job 0:6677637435 is in state 'finished'
[2025-06-03 14:37:01] 2025-06-03 18:36:30,545 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 14:37:01] 2025-06-03 18:36:32,815 | INFO     | job 6677637435 has state=finished
[2025-06-03 14:37:01] 2025-06-03 18:36:32,815 | INFO     | preparing for final server update for job 6677637435 in state='finished'
[2025-06-03 14:37:01] 2025-06-03 18:36:32,816 | INFO     | this job has now completed (state=finished)
[2025-06-03 14:37:01] 2025-06-03 18:36:32,816 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 14:37:01] 2025-06-03 18:36:32,816 | INFO     | log transfer has been attempted: DONE
[2025-06-03 14:37:01] 2025-06-03 18:36:32,816 | INFO     | job 6677637435 has finished - writing final server update
[2025-06-03 14:37:01] 2025-06-03 18:36:32,817 | INFO     | total number of processed events: 400 (read)
[2025-06-03 14:37:01] 2025-06-03 18:36:32,848 | INFO     | executing command: lscpu
[2025-06-03 14:37:01] 2025-06-03 18:36:32,916 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 14:37:01] 2025-06-03 18:36:33,050 | INFO     | monitor loop #433: job 0:6677637435 is in state 'finished'
[2025-06-03 14:37:01] 2025-06-03 18:36:33,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 14:37:01] 2025-06-03 18:36:35,559 | INFO     | PID=2211226 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-03 14:37:01] 2025-06-03 18:36:35,560 | INFO     | .. there are 18 such processes running
[2025-06-03 14:37:01] 2025-06-03 18:36:35,570 | INFO     | monitor loop #434: job 0:6677637435 is in state 'finished'
[2025-06-03 14:37:01] 2025-06-03 18:36:35,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 14:37:01] 2025-06-03 18:36:38,078 | INFO     | monitor loop #435: job 0:6677637435 is in state 'finished'
[2025-06-03 14:37:01] 2025-06-03 18:36:38,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 14:37:01] 2025-06-03 18:36:39,863 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 14:37:01] 2025-06-03 18:36:39,864 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6677637435/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 14:37:01] 2025-06-03 18:36:39,865 | INFO     | extracted standard info from prmon json
[2025-06-03 14:37:01] 2025-06-03 18:36:39,865 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 14:37:01] 2025-06-03 18:36:39,866 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 14:37:01] 2025-06-03 18:36:39,866 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 14:37:01] 2025-06-03 18:36:39,867 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 14:37:01] 2025-06-03 18:36:39,870 | INFO     | fitting pss+swap vs Time
[2025-06-03 14:37:01] 2025-06-03 18:36:39,870 | INFO     | sum of square deviations: 241429643.0
[2025-06-03 14:37:01] 2025-06-03 18:36:39,871 | INFO     | sum of deviations: 13632049725.0
[2025-06-03 14:37:01] 2025-06-03 18:36:39,871 | INFO     | mean x: 1748972823.5
[2025-06-03 14:37:01] 2025-06-03 18:36:39,871 | INFO     | mean y: 2101601.1739130435
[2025-06-03 14:37:01] 2025-06-03 18:36:39,871 | INFO     | -- intersect: -98751656228.08174
[2025-06-03 14:37:01] 2025-06-03 18:36:39,871 | INFO     | intersect: -98751656228.08174
[2025-06-03 14:37:01] 2025-06-03 18:36:39,872 | INFO     | chi2: 1.1538698286831695
[2025-06-03 14:37:01] 2025-06-03 18:36:39,872 | INFO     | -- intersect: -98751656228.08174
[2025-06-03 14:37:01] 2025-06-03 18:36:39,872 | INFO     | current memory leak: 56.46 B/s (using 92 data points, chi2=1.15)
[2025-06-03 14:37:01] 2025-06-03 18:36:39,873 | INFO     | ..............................
[2025-06-03 14:37:01] 2025-06-03 18:36:39,873 | INFO     | . Timing measurements:
[2025-06-03 14:37:01] 2025-06-03 18:36:39,873 | INFO     | . get job = 0 s
[2025-06-03 14:37:01] 2025-06-03 18:36:39,873 | INFO     | . initial setup = 2 s
[2025-06-03 14:37:01] 2025-06-03 18:36:39,874 | INFO     | . payload setup = 6 s
[2025-06-03 14:37:01] 2025-06-03 18:36:39,874 | INFO     | . stage-in = 0 s
[2025-06-03 14:37:01] 2025-06-03 18:36:39,874 | INFO     | . payload execution = 6041 s
[2025-06-03 14:37:01] 2025-06-03 18:36:39,874 | INFO     | . stage-out = 2 s
[2025-06-03 14:37:01] 2025-06-03 18:36:39,874 | INFO     | . log creation = 0 s
[2025-06-03 14:37:01] 2025-06-03 18:36:39,874 | INFO     | ..............................
[2025-06-03 14:37:01] 2025-06-03 18:36:40,428 | INFO     | 
[2025-06-03 14:37:01] 2025-06-03 18:36:40,428 | INFO     | job summary report
[2025-06-03 14:37:01] 2025-06-03 18:36:40,428 | INFO     | --------------------------------------------------
[2025-06-03 14:37:01] 2025-06-03 18:36:40,428 | INFO     | PanDA job id: 6677637435
[2025-06-03 14:37:01] 2025-06-03 18:36:40,429 | INFO     | task id: 45006595
[2025-06-03 14:37:01] 2025-06-03 18:36:40,429 | INFO     | errors: (none)
[2025-06-03 14:37:01] 2025-06-03 18:36:40,429 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 14:37:01] 2025-06-03 18:36:40,429 | INFO     | pilot state: finished 
[2025-06-03 14:37:01] 2025-06-03 18:36:40,429 | INFO     | transexitcode: 0
[2025-06-03 14:37:01] 2025-06-03 18:36:40,429 | INFO     | exeerrorcode: 0
[2025-06-03 14:37:01] 2025-06-03 18:36:40,429 | INFO     | exeerrordiag: 
[2025-06-03 14:37:01] 2025-06-03 18:36:40,429 | INFO     | exitcode: 0
[2025-06-03 14:37:01] 2025-06-03 18:36:40,429 | INFO     | exitmsg: OK
[2025-06-03 14:37:01] 2025-06-03 18:36:40,429 | INFO     | cpuconsumptiontime: 41268 s
[2025-06-03 14:37:01] 2025-06-03 18:36:40,429 | INFO     | nevents: 400
[2025-06-03 14:37:01] 2025-06-03 18:36:40,430 | INFO     | neventsw: 0
[2025-06-03 14:37:01] 2025-06-03 18:36:40,430 | INFO     | pid: 2217698
[2025-06-03 14:37:01] 2025-06-03 18:36:40,433 | INFO     | pgrp: 2217698
[2025-06-03 14:37:01] 2025-06-03 18:36:40,433 | INFO     | corecount: 8
[2025-06-03 14:37:01] 2025-06-03 18:36:40,433 | INFO     | event service: False
[2025-06-03 14:37:01] 2025-06-03 18:36:40,433 | INFO     | sizes: {0: 2405182, 4: 2405388, 11: 2405416, 6052: 2432157, 6054: 2441098, 6058: 2441154, 6068: 2441452}
[2025-06-03 14:37:01] 2025-06-03 18:36:40,433 | INFO     | --------------------------------------------------
[2025-06-03 14:37:01] 2025-06-03 18:36:40,433 | INFO     | 
[2025-06-03 14:37:01] 2025-06-03 18:36:40,434 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-03 14:37:01] 2025-06-03 18:36:40,456 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,457 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,457 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,457 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,457 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,457 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,458 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,458 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,458 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,458 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,458 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,458 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,458 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,459 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,459 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,459 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,459 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,459 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 14:37:01] 2025-06-03 18:36:40,459 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,459 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 14:37:01] 2025-06-03 18:36:40,460 | INFO     | job 6677637435 has completed (purged errors)
[2025-06-03 14:37:01] 2025-06-03 18:36:40,460 | INFO     | overall cleanup function is called
[2025-06-03 14:37:01] 2025-06-03 18:36:41,470 | INFO     | --- collectZombieJob: --- 10, [2217698]
[2025-06-03 14:37:01] 2025-06-03 18:36:41,470 | INFO     | zombie collector waiting for pid 2217698
[2025-06-03 14:37:01] 2025-06-03 18:36:41,470 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 14:37:01] 2025-06-03 18:36:41,471 | INFO     | collected zombie processes
[2025-06-03 14:37:01] 2025-06-03 18:36:41,471 | INFO     | will attempt to kill all subprocesses of pid=2217698
[2025-06-03 14:37:01] 2025-06-03 18:36:41,998 | INFO     | process IDs to be killed: [2217698] (in reverse order)
[2025-06-03 14:37:01] 2025-06-03 18:36:42,402 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 14:37:01] 2025-06-03 18:36:42,403 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 14:37:01] 2025-06-03 18:36:42,416 | INFO     | did not find any defunct processes belonging to 2217698
[2025-06-03 14:37:01] 2025-06-03 18:36:42,428 | INFO     | did not find any defunct processes belonging to 2217698
[2025-06-03 14:37:01] 2025-06-03 18:36:42,429 | INFO     | ready for new job
[2025-06-03 14:37:01] 2025-06-03 18:36:42,429 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 14:37:01] 2025-06-03 18:36:42,431 | INFO     | **************************************
[2025-06-03 14:37:01] 2025-06-03 18:36:42,431 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 14:37:01] 2025-06-03 18:36:42,432 | INFO     | **************************************
[2025-06-03 14:37:01] 2025-06-03 18:36:42,432 | INFO     | 
[2025-06-03 14:37:01] 2025-06-03 18:36:42,435 | INFO     | architecture information:
[2025-06-03 14:37:01] 2025-06-03 18:36:42,435 | INFO     | executing command: cat /etc/os-release
[2025-06-03 14:37:01] 2025-06-03 18:36:42,498 | INFO     | cat /etc/os-release:
[2025-06-03 14:37:01] NAME="CentOS Linux"
[2025-06-03 14:37:01] VERSION="7 (Core)"
[2025-06-03 14:37:01] ID="centos"
[2025-06-03 14:37:01] ID_LIKE="rhel fedora"
[2025-06-03 14:37:01] VERSION_ID="7"
[2025-06-03 14:37:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 14:37:01] ANSI_COLOR="0;31"
[2025-06-03 14:37:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 14:37:01] HOME_URL="https://www.centos.org/"
[2025-06-03 14:37:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 14:37:01] 
[2025-06-03 14:37:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 14:37:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 14:37:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 14:37:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 14:37:01] 
[2025-06-03 14:37:01] 2025-06-03 18:36:42,499 | INFO     | **************************************
[2025-06-03 14:37:01] 2025-06-03 18:36:43,001 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-03 14:37:01] 2025-06-03 18:36:43,018 | INFO     | sufficient remaining disk space (61949870080 B)
[2025-06-03 14:37:01] 2025-06-03 18:36:43,018 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 14:37:01] 2025-06-03 18:36:43,019 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 14:37:01] 2025-06-03 18:36:43,019 | INFO     | update_server=False
[2025-06-03 14:37:01] 2025-06-03 18:36:43,019 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 14:37:01] 2025-06-03 18:36:43,019 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 14:37:01] 2025-06-03 18:36:43,092 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 14:37:01] 2025-06-03 18:36:43,093 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 14:37:01] 2025-06-03 18:36:43,093 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:37:01] 2025-06-03 18:36:43,093 | INFO     | will abort loop
[2025-06-03 14:37:01] 2025-06-03 18:36:43,285 | INFO     | all payload control threads have been joined
[2025-06-03 14:37:01] 2025-06-03 18:36:43,359 | INFO     | all data control threads have been joined
[2025-06-03 14:37:01] 2025-06-03 18:36:43,596 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 14:37:01] 2025-06-03 18:36:43,596 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 14:37:01] 2025-06-03 18:36:43,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 14:37:01] 2025-06-03 18:36:43,701 | INFO     | all job control threads have been joined
[2025-06-03 14:37:01] 2025-06-03 18:36:44,024 | INFO     | [job] retrieve thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:44,099 | INFO     | [job] job monitor thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:44,241 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:44,290 | INFO     | [payload] control thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:44,315 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:44,339 | INFO     | [payload] validate_post thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:44,364 | INFO     | [data] control thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:44,707 | INFO     | [job] control thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:44,952 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 14:37:01] 2025-06-03 18:36:45,028 | INFO     | [data] copytool_out thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:45,037 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:37:01] 2025-06-03 18:36:45,063 | INFO     | [payload] failed_post thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:45,104 | INFO     | [job] validate thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:45,155 | INFO     | [data] copytool_in thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:45,440 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:46,043 | INFO     | [job] queue monitor thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:48,962 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:54,042 | INFO     | job.realtimelogging is not enabled
[2025-06-03 14:37:01] 2025-06-03 18:36:55,047 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 14:37:01] 2025-06-03 18:36:56,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140095904503616)>', '<ExcThread(monitor, started 140095558498048)>']
[2025-06-03 14:37:01] 2025-06-03 18:36:56,672 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 14:37:01] 2025-06-03 18:36:56,674 | INFO     | [monitor] control thread has ended
[2025-06-03 14:37:01] 2025-06-03 18:37:01,071 | INFO     | all workflow threads have been joined
[2025-06-03 14:37:01] 2025-06-03 18:37:01,071 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 14:37:01] 2025-06-03 18:37:01,072 | INFO     | traces error code: 0
[2025-06-03 14:37:01] 2025-06-03 18:37:01,072 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 14:37:01] 2025-06-03 18:37:01,385 [wrapper] ==== pilot stdout END ====
[2025-06-03 14:37:01] 2025-06-03 18:37:01,400 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 14:37:01] 2025-06-03 18:37:01,415 [wrapper] pilotpid: 2211226
[2025-06-03 14:37:01] 2025-06-03 18:37:01,430 [wrapper] Pilot exit status: 0
[2025-06-03 14:37:01] 2025-06-03 18:37:01,523 [wrapper] pandaids: 6677637435
[2025-06-03 14:37:01] 2025-06-03 18:37:01,659 [wrapper] cleanup supervisor_pilot 2646319 2211227
[2025-06-03 14:37:01] 2025-06-03 18:37:01,695 [wrapper] Test setup, not cleaning
[2025-06-03 14:37:01] 2025-06-03 18:37:01,709 [wrapper] apfmon messages muted
[2025-06-03 14:37:01] 2025-06-03 18:37:01,721 [wrapper] ==== wrapper stdout END ====
[2025-06-03 14:37:01] 2025-06-03 18:37:01,726 [wrapper] ==== wrapper stderr END ====
[2025-06-03 14:37:01]  *** Error codes and diagnostics ***
[2025-06-03 14:37:01]     "exeErrorCode": 0,
[2025-06-03 14:37:01]     "exeErrorDiag": "",
[2025-06-03 14:37:01]     "pilotErrorCode": 0,
[2025-06-03 14:37:01]     "pilotErrorDiag": "",
[2025-06-03 14:37:01]  *** Listing of results directory ***
[2025-06-03 14:37:01] total 385492
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 09:40 pilot3.tar.gz
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 09:51 queuedata.json
[2025-06-03 14:37:01] -rwx------. 1 boincer umatlas     37140 Jun  3 09:53 runpilot2-wrapper.sh
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas       100 Jun  3 12:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 14:37:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 12:55 run_atlas
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas       105 Jun  3 12:55 job.xml
[2025-06-03 14:37:01] -rw-r--r--. 2 boincer umatlas 212770745 Jun  3 12:55 EVNT.45006593._001397.pool.root.1
[2025-06-03 14:37:01] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 12:55 start_atlas.sh
[2025-06-03 14:37:01] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 12:55 shared
[2025-06-03 14:37:01] -rw-r--r--. 2 boincer umatlas    508878 Jun  3 12:55 input.tar.gz
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas         0 Jun  3 12:55 boinc_lockfile
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas      2524 Jun  3 12:55 pandaJob.out
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas    983734 Jun  3 12:55 agis_schedconf.cvmfs.json
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas   1603667 Jun  3 12:55 agis_ddmendpoints.agis.ALL.json
[2025-06-03 14:37:01] drwx------. 4 boincer umatlas      4096 Jun  3 12:55 pilot3
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas      6613 Jun  3 14:27 init_data.xml
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas 176377673 Jun  3 14:35 HITS.45006595._034730.pool.root.1
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas       529 Jun  3 14:35 boinc_task_state.xml
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas        95 Jun  3 14:36 pilot_heartbeat.json
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas      1035 Jun  3 14:36 memory_monitor_summary.json
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas    308062 Jun  3 14:36 log.45006595._034730.job.log.tgz.1
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas      7707 Jun  3 14:36 heartbeat.json
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 14:36 boinc_mmap_file
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas        27 Jun  3 14:36 wrapper_checkpoint.txt
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas      4611 Jun  3 14:37 pilotlog.txt
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas    574583 Jun  3 14:37 log.45006595._034730.job.log.1
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas       357 Jun  3 14:37 output.list
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas       620 Jun  3 14:37 runtime_log
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas    901120 Jun  3 14:37 result.tar.gz
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas       651 Jun  3 14:37 TxLKDmEGhg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmspYKDmMtlyOm.diag
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas      8654 Jun  3 14:37 runtime_log.err
[2025-06-03 14:37:01] -rw-r--r--. 1 boincer umatlas     22028 Jun  3 14:37 stderr.txt
[2025-06-03 14:37:01] HITS file was successfully produced:
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas 176377673 Jun  3 14:35 shared/HITS.pool.root.1
[2025-06-03 14:37:01]  *** Contents of shared directory: ***
[2025-06-03 14:37:01] total 381428
[2025-06-03 14:37:01] -rw-r--r--. 2 boincer umatlas 212770745 Jun  3 12:55 ATLAS.root_0
[2025-06-03 14:37:01] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 12:55 start_atlas.sh
[2025-06-03 14:37:01] -rw-r--r--. 2 boincer umatlas    508878 Jun  3 12:55 input.tar.gz
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas 176377673 Jun  3 14:35 HITS.pool.root.1
[2025-06-03 14:37:01] -rw-------. 1 boincer umatlas    901120 Jun  3 14:37 result.tar.gz
14:37:03 (2207416): run_atlas exited; CPU time 41464.784571
14:37:03 (2207416): called boinc_finish(0)

</stderr_txt>
]]>

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