Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:24:01 (18888): wrapper (7.7.26015): starting
03:24:01 (18888): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 03:24:01] Arguments: --nthreads 8
[2025-06-04 03:24:01] Threads: 8
[2025-06-04 03:24:01] Checking for CVMFS
[2025-06-04 03:24:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 03:24:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 03:24:02] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 03:24:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 03:24:03] 2.11.2.0 29550 32538 94464 146762 0 94 14368492 25165824 3359 130560 0 17343884 99.816 19568981 2077 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 03:24:03] CVMFS is ok
[2025-06-04 03:24:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 03:24:03] Checking for apptainer binary...
[2025-06-04 03:24:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 03:24:03] Running /usr/bin/apptainer --version
[2025-06-04 03:24:03] apptainer version 1.3.2-1.el7
[2025-06-04 03:24:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 03:33:20] cg-vwn256.simple-grid.lan
[2025-06-04 03:33:20] apptainer works
[2025-06-04 03:33:20] Set ATHENA_PROC_NUMBER=8
[2025-06-04 03:33:20] Set ATHENA_CORE_NUMBER=8
[2025-06-04 03:33:20] Starting ATLAS job with PandaID=6677658322
[2025-06-04 03:33:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:39:48]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:39:48] 2025-06-04 05:38:51,698 | INFO     | extracted standard info from prmon json
[2025-06-04 07:39:48] 2025-06-04 05:38:51,698 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:39:48] 2025-06-04 05:38:51,698 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:39:48] 2025-06-04 05:38:51,698 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:39:48] 2025-06-04 05:38:51,698 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:39:48] 2025-06-04 05:38:51,704 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:39:48] 2025-06-04 05:38:51,704 | INFO     | sum of square deviations: 3723716330.0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,706 | INFO     | sum of deviations: 58372513938.00002
[2025-06-04 07:39:48] 2025-06-04 05:38:51,706 | INFO     | mean x: 1749008443.0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,707 | INFO     | mean y: 2465193.0043668123
[2025-06-04 07:39:48] 2025-06-04 05:38:51,707 | INFO     | -- intersect: -27414773573.058464
[2025-06-04 07:39:48] 2025-06-04 05:38:51,707 | INFO     | intersect: -27414773573.058464
[2025-06-04 07:39:48] 2025-06-04 05:38:51,707 | INFO     | chi2: 4.788360368793882
[2025-06-04 07:39:48] 2025-06-04 05:38:51,708 | INFO     | sum of square deviations: 3485088600.0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,709 | INFO     | sum of deviations: 56997489910.500015
[2025-06-04 07:39:48] 2025-06-04 05:38:51,710 | INFO     | mean x: 1749008290.5
[2025-06-04 07:39:48] 2025-06-04 05:38:51,710 | INFO     | mean y: 2464315.8973214286
[2025-06-04 07:39:48] 2025-06-04 05:38:51,710 | INFO     | -- intersect: -28601997100.422092
[2025-06-04 07:39:48] 2025-06-04 05:38:51,710 | INFO     | intersect: -28601997100.422092
[2025-06-04 07:39:48] 2025-06-04 05:38:51,710 | INFO     | chi2: 4.7947850507434735
[2025-06-04 07:39:48] 2025-06-04 05:38:51,710 | INFO     | current chi2=4.7947850507434735 (change=-0.13417289958922154 %)
[2025-06-04 07:39:48] 2025-06-04 05:38:51,710 | INFO     | right removable region: 223
[2025-06-04 07:39:48] 2025-06-04 05:38:51,711 | INFO     | sum of square deviations: 3485088600.0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,713 | INFO     | sum of deviations: -16042303929.000004
[2025-06-04 07:39:48] 2025-06-04 05:38:51,713 | INFO     | mean x: 1749008595.5
[2025-06-04 07:39:48] 2025-06-04 05:38:51,713 | INFO     | mean y: 2512674.0714285714
[2025-06-04 07:39:48] 2025-06-04 05:38:51,713 | INFO     | -- intersect: 8053420608.935532
[2025-06-04 07:39:48] 2025-06-04 05:38:51,713 | INFO     | intersect: 8053420608.935532
[2025-06-04 07:39:48] 2025-06-04 05:38:51,714 | INFO     | chi2: 0.6180338187145328
[2025-06-04 07:39:48] 2025-06-04 05:38:51,714 | INFO     | current chi2=0.6180338187145328 (change=87.09299695272921 %)
[2025-06-04 07:39:48] 2025-06-04 05:38:51,714 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,716 | INFO     | sum of deviations: -37815510216.999985
[2025-06-04 07:39:48] 2025-06-04 05:38:51,716 | INFO     | mean x: 1749008748.0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,716 | INFO     | mean y: 2527108.114155251
[2025-06-04 07:39:48] 2025-06-04 05:38:51,716 | INFO     | -- intersect: 20310203436.7322
[2025-06-04 07:39:48] 2025-06-04 05:38:51,716 | INFO     | intersect: 20310203436.7322
[2025-06-04 07:39:48] 2025-06-04 05:38:51,717 | INFO     | chi2: 0.08379039851196604
[2025-06-04 07:39:48] 2025-06-04 05:38:51,717 | INFO     | current chi2=0.08379039851196604 (change=86.4424249976734 %)
[2025-06-04 07:39:48] 2025-06-04 05:38:51,717 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 07:39:48] 2025-06-04 05:38:51,719 | INFO     | sum of deviations: -36185486821.99999
[2025-06-04 07:39:48] 2025-06-04 05:38:51,719 | INFO     | mean x: 1749008900.5
[2025-06-04 07:39:48] 2025-06-04 05:38:51,719 | INFO     | mean y: 2525960.037383178
[2025-06-04 07:39:48] 2025-06-04 05:38:51,719 | INFO     | -- intersect: 20829020589.169186
[2025-06-04 07:39:48] 2025-06-04 05:38:51,719 | INFO     | intersect: 20829020589.169186
[2025-06-04 07:39:48] 2025-06-04 05:38:51,720 | INFO     | chi2: 0.08259625012457765
[2025-06-04 07:39:48] 2025-06-04 05:38:51,720 | INFO     | current chi2=0.08259625012457765 (change=1.4251613652581636 %)
[2025-06-04 07:39:48] 2025-06-04 05:38:51,720 | INFO     | left removable region: 30
[2025-06-04 07:39:48] 2025-06-04 05:38:51,720 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,722 | INFO     | sum of deviations: -25549792233.0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,722 | INFO     | mean x: 1749009175.0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,722 | INFO     | mean y: 2518605.1191709843
[2025-06-04 07:39:48] 2025-06-04 05:38:51,722 | INFO     | -- intersect: 20049120645.70318
[2025-06-04 07:39:48] 2025-06-04 05:38:51,722 | INFO     | intersect: 20049120645.70318
[2025-06-04 07:39:48] 2025-06-04 05:38:51,722 | INFO     | chi2: 0.07692878655396959
[2025-06-04 07:39:48] 2025-06-04 05:38:51,722 | INFO     | -- intersect: 20049120645.70318
[2025-06-04 07:39:48] 2025-06-04 05:38:51,723 | INFO     | current memory leak: -11.46 B/s (using 193 data points, chi2=0.08)
[2025-06-04 07:39:48] 2025-06-04 05:38:51,723 | INFO     | ..............................
[2025-06-04 07:39:48] 2025-06-04 05:38:51,724 | INFO     | . Timing measurements:
[2025-06-04 07:39:48] 2025-06-04 05:38:51,724 | INFO     | . get job = 0 s
[2025-06-04 07:39:48] 2025-06-04 05:38:51,724 | INFO     | . initial setup = 5 s
[2025-06-04 07:39:48] 2025-06-04 05:38:51,724 | INFO     | . payload setup = 190 s
[2025-06-04 07:39:48] 2025-06-04 05:38:51,724 | INFO     | . stage-in = 0 s
[2025-06-04 07:39:48] 2025-06-04 05:38:51,724 | INFO     | . payload execution = 14105 s
[2025-06-04 07:39:48] 2025-06-04 05:38:51,724 | INFO     | . stage-out = 3 s
[2025-06-04 07:39:48] 2025-06-04 05:38:51,724 | INFO     | . log creation = 1 s
[2025-06-04 07:39:48] 2025-06-04 05:38:51,724 | INFO     | ..............................
[2025-06-04 07:39:48] 2025-06-04 05:38:51,892 | INFO     | 
[2025-06-04 07:39:48] 2025-06-04 05:38:51,893 | INFO     | job summary report
[2025-06-04 07:39:48] 2025-06-04 05:38:51,893 | INFO     | --------------------------------------------------
[2025-06-04 07:39:48] 2025-06-04 05:38:51,893 | INFO     | PanDA job id: 6677658322
[2025-06-04 07:39:48] 2025-06-04 05:38:51,893 | INFO     | task id: 45006595
[2025-06-04 07:39:48] 2025-06-04 05:38:51,893 | INFO     | errors: (none)
[2025-06-04 07:39:48] 2025-06-04 05:38:51,893 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:39:48] 2025-06-04 05:38:51,893 | INFO     | pilot state: finished 
[2025-06-04 07:39:48] 2025-06-04 05:38:51,893 | INFO     | transexitcode: 0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,893 | INFO     | exeerrorcode: 0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,893 | INFO     | exeerrordiag: 
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | exitcode: 0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | exitmsg: OK
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | cpuconsumptiontime: 51009 s
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | nevents: 400
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | neventsw: 0
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | pid: 7919
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | pgrp: 7919
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | corecount: 8
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | event service: False
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | sizes: {0: 2404356, 1: 2405042, 2: 2405241, 13: 2405241, 24: 2405297, 34: 2405325, 45: 2405481, 56: 2405509, 66: 2405537, 77: 2405565, 83: 2405827, 88: 2406163, 14
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | --------------------------------------------------
[2025-06-04 07:39:48] 2025-06-04 05:38:51,894 | INFO     | 
[2025-06-04 07:39:48] 2025-06-04 05:38:51,895 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-04 07:39:48] 2025-06-04 05:38:52,042 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,043 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,043 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,043 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,043 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,043 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,043 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,043 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,043 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,043 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,043 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,043 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,044 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,044 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,044 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,044 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,044 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,044 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:39:48] 2025-06-04 05:38:52,044 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,044 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:39:48] 2025-06-04 05:38:52,044 | INFO     | job 6677658322 has completed (purged errors)
[2025-06-04 07:39:48] 2025-06-04 05:38:52,045 | INFO     | overall cleanup function is called
[2025-06-04 07:39:48] 2025-06-04 05:38:53,053 | INFO     | --- collectZombieJob: --- 10, [7919]
[2025-06-04 07:39:48] 2025-06-04 05:38:53,053 | INFO     | zombie collector waiting for pid 7919
[2025-06-04 07:39:48] 2025-06-04 05:38:53,054 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:39:48] 2025-06-04 05:38:53,054 | INFO     | collected zombie processes
[2025-06-04 07:39:48] 2025-06-04 05:38:53,054 | INFO     | will attempt to kill all subprocesses of pid=7919
[2025-06-04 07:39:48] 2025-06-04 05:38:53,171 | INFO     | process IDs to be killed: [7919] (in reverse order)
[2025-06-04 07:39:48] 2025-06-04 05:38:53,432 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:39:48] 2025-06-04 05:38:53,432 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:39:48] 2025-06-04 05:38:53,436 | INFO     | did not find any defunct processes belonging to 7919
[2025-06-04 07:39:48] 2025-06-04 05:38:53,440 | INFO     | did not find any defunct processes belonging to 7919
[2025-06-04 07:39:48] 2025-06-04 05:38:53,440 | INFO     | ready for new job
[2025-06-04 07:39:48] 2025-06-04 05:38:53,440 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:39:48] 2025-06-04 05:38:53,442 | INFO     | **************************************
[2025-06-04 07:39:48] 2025-06-04 05:38:53,443 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:39:48] 2025-06-04 05:38:53,443 | INFO     | **************************************
[2025-06-04 07:39:48] 2025-06-04 05:38:53,443 | INFO     | 
[2025-06-04 07:39:48] 2025-06-04 05:38:53,443 | INFO     | pilot is running in a VM
[2025-06-04 07:39:48] 2025-06-04 05:38:53,443 | INFO     | architecture information:
[2025-06-04 07:39:48] 2025-06-04 05:38:53,444 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:39:48] 2025-06-04 05:38:53,610 | INFO     | cat /etc/os-release:
[2025-06-04 07:39:48] NAME="CentOS Linux"
[2025-06-04 07:39:48] VERSION="7 (Core)"
[2025-06-04 07:39:48] ID="centos"
[2025-06-04 07:39:48] ID_LIKE="rhel fedora"
[2025-06-04 07:39:48] VERSION_ID="7"
[2025-06-04 07:39:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:39:48] ANSI_COLOR="0;31"
[2025-06-04 07:39:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:39:48] HOME_URL="https://www.centos.org/"
[2025-06-04 07:39:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:39:48] 
[2025-06-04 07:39:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:39:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:39:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:39:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:39:48] 
[2025-06-04 07:39:48] 2025-06-04 05:38:53,611 | INFO     | **************************************
[2025-06-04 07:39:48] 2025-06-04 05:38:54,115 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-04 07:39:48] 2025-06-04 05:38:54,231 | INFO     | sufficient remaining disk space (496807968768 B)
[2025-06-04 07:39:48] 2025-06-04 05:38:54,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:39:48] 2025-06-04 05:38:54,232 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:39:48] 2025-06-04 05:38:54,232 | INFO     | update_server=False
[2025-06-04 07:39:48] 2025-06-04 05:38:54,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:39:48] 2025-06-04 05:38:54,233 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 07:39:48] 2025-06-04 05:38:54,234 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:39:48] 2025-06-04 05:38:54,234 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:39:48] 2025-06-04 05:38:54,234 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:39:48] 2025-06-04 05:38:54,237 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:39:48] 2025-06-04 05:38:54,238 | INFO     | aborting loop
[2025-06-04 07:39:48] 2025-06-04 05:38:54,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:39:48] 2025-06-04 05:38:54,376 | INFO     | all data control threads have been joined
[2025-06-04 07:39:48] 2025-06-04 05:38:54,883 | INFO     | all job control threads have been joined
[2025-06-04 07:39:48] 2025-06-04 05:38:54,932 | INFO     | all payload control threads have been joined
[2025-06-04 07:39:48] 2025-06-04 05:38:55,237 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:55,243 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:55,279 | INFO     | [job] validate thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:55,295 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:39:48] 2025-06-04 05:38:55,384 | INFO     | [data] control thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:55,428 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:55,535 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:55,857 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:55,888 | INFO     | [job] control thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:55,938 | INFO     | [payload] control thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:56,122 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:56,213 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:56,250 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:56,251 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:56,668 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:56,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:39:48] 2025-06-04 05:38:57,907 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:38:59,304 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:39:48] 2025-06-04 05:39:01,284 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139835080165184)>', '<ExcThread(monitor, started 139834253367040)>']
[2025-06-04 07:39:48] 2025-06-04 05:39:02,282 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:39:48] 2025-06-04 05:39:02,283 | INFO     | [monitor] control thread has ended
[2025-06-04 07:39:48] 2025-06-04 05:39:06,310 | INFO     | all workflow threads have been joined
[2025-06-04 07:39:48] 2025-06-04 05:39:06,311 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:39:48] 2025-06-04 05:39:06,311 | INFO     | traces error code: 0
[2025-06-04 07:39:48] 2025-06-04 05:39:06,311 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:39:48] 2025-06-04 05:39:06,673 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:39:48] 2025-06-04 05:39:06,750 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:39:48] 2025-06-04 05:39:06,791 [wrapper] pilotpid: 31654
[2025-06-04 07:39:48] 2025-06-04 05:39:06,851 [wrapper] Pilot exit status: 0
[2025-06-04 07:39:48] 2025-06-04 05:39:07,139 [wrapper] pandaids: 6677658322
[2025-06-04 07:39:48] 2025-06-04 05:39:07,680 [wrapper] cleanup supervisor_pilot 26762 31655
[2025-06-04 07:39:48] 2025-06-04 05:39:07,748 [wrapper] Test setup, not cleaning
[2025-06-04 07:39:48] 2025-06-04 05:39:07,825 [wrapper] apfmon messages muted
[2025-06-04 07:39:48] 2025-06-04 05:39:07,856 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:39:48] 2025-06-04 05:39:07,935 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:39:48]  *** Error codes and diagnostics ***
[2025-06-04 07:39:48]     "exeErrorCode": 0,
[2025-06-04 07:39:48]     "exeErrorDiag": "",
[2025-06-04 07:39:48]     "pilotErrorCode": 0,
[2025-06-04 07:39:48]     "pilotErrorDiag": "",
[2025-06-04 07:39:48]  *** Listing of results directory ***
[2025-06-04 07:39:48] total 391096
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc    495897 Jun  3 16:09 pilot3.tar.gz
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc      5111 Jun  3 16:19 queuedata.json
[2025-06-04 07:39:48] -rwx------. 1 boinc boinc     37140 Jun  3 16:19 runpilot2-wrapper.sh
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc       100 Jun  4 03:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:39:48] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 03:24 run_atlas
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc       105 Jun  4 03:24 job.xml
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc      6390 Jun  4 03:24 init_data.xml
[2025-06-04 07:39:48] -rw-r--r--. 2 boinc boinc 213133826 Jun  4 03:24 EVNT.45006593._001412.pool.root.1
[2025-06-04 07:39:48] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:24 start_atlas.sh
[2025-06-04 07:39:48] drwxrwx--x. 2 boinc boinc        68 Jun  4 03:24 shared
[2025-06-04 07:39:48] -rw-r--r--. 2 boinc boinc    508877 Jun  4 03:24 input.tar.gz
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc         0 Jun  4 03:24 boinc_lockfile
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc      2525 Jun  4 03:33 pandaJob.out
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc    986069 Jun  4 03:36 agis_schedconf.cvmfs.json
[2025-06-04 07:39:48] drwx------. 4 boinc boinc      4096 Jun  4 03:36 pilot3
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc 180291470 Jun  4 07:36 HITS.45006595._035120.pool.root.1
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc       531 Jun  4 07:36 boinc_task_state.xml
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc      1013 Jun  4 07:37 memory_monitor_summary.json
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc   1603667 Jun  4 07:37 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc    378295 Jun  4 07:37 log.45006595._035120.job.log.tgz.1
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc        95 Jun  4 07:37 pilot_heartbeat.json
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc      7695 Jun  4 07:38 heartbeat.json
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc      4540 Jun  4 07:39 pilotlog.txt
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc   1238708 Jun  4 07:39 log.45006595._035120.job.log.1
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc       357 Jun  4 07:39 output.list
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc       620 Jun  4 07:39 runtime_log
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc   1638400 Jun  4 07:39 result.tar.gz
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc       657 Jun  4 07:39 xdgLDm0ehg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTWkKDm43hgrn.diag
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc      8673 Jun  4 07:39 runtime_log.err
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc      8192 Jun  4 07:39 boinc_mmap_file
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc        28 Jun  4 07:39 wrapper_checkpoint.txt
[2025-06-04 07:39:48] -rw-r--r--. 1 boinc boinc     20521 Jun  4 07:39 stderr.txt
[2025-06-04 07:39:48] HITS file was successfully produced:
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc 180291470 Jun  4 07:36 shared/HITS.pool.root.1
[2025-06-04 07:39:48]  *** Contents of shared directory: ***
[2025-06-04 07:39:48] total 386324
[2025-06-04 07:39:48] -rw-r--r--. 2 boinc boinc 213133826 Jun  4 03:24 ATLAS.root_0
[2025-06-04 07:39:48] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:24 start_atlas.sh
[2025-06-04 07:39:48] -rw-r--r--. 2 boinc boinc    508877 Jun  4 03:24 input.tar.gz
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc 180291470 Jun  4 07:36 HITS.pool.root.1
[2025-06-04 07:39:48] -rw-------. 1 boinc boinc   1638400 Jun  4 07:39 result.tar.gz
07:39:50 (18888): run_atlas exited; CPU time 51207.164052
07:39:50 (18888): called boinc_finish(0)

</stderr_txt>
]]>

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