Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
15:35:41 (5382): wrapper (7.7.26015): starting
15:35:41 (5382): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 15:35:41] Arguments: --nthreads 12
[2025-06-03 15:35:41] Threads: 12
[2025-06-03 15:35:41] Checking for CVMFS
[2025-06-03 15:35:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 15:35:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 15:35:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 15:35:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 15:35:41] 2.10.0.0 29567 1557 104992 146755 1 186 14314190 16777217 854 130560 0 6325948 99.998 390697 6543 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-06-03 15:35:41] CVMFS is ok
[2025-06-03 15:35:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 15:35:41] Checking for apptainer binary...
[2025-06-03 15:35:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 15:35:41] Running /usr/bin/apptainer --version
[2025-06-03 15:35:41] apptainer version 1.3.6-150600.4.9.1
[2025-06-03 15:35:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 15:35:41] boinc-runner
[2025-06-03 15:35:41] apptainer works
[2025-06-03 15:35:41] Set ATHENA_PROC_NUMBER=12
[2025-06-03 15:35:41] Set ATHENA_CORE_NUMBER=12
[2025-06-03 15:35:41] Starting ATLAS job with PandaID=6666594494
[2025-06-03 15:35:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 16:10:34]  *** The last 200 lines of the pilot log: ***
[2025-06-03 16:10:34]  filetype=log
[2025-06-03 16:10:34]  guid=0e9ca0ee-64ef-42e1-a9a6-15f70c0e2cd2
[2025-06-03 16:10:34]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 16:10:34]  is_altstaged=None
[2025-06-03 16:10:34]  is_tar=False
[2025-06-03 16:10:34]  lfn=log.44871837._059924.job.log.tgz.1
[2025-06-03 16:10:34]  mtime=0
[2025-06-03 16:10:34]  protocol_id=None
[2025-06-03 16:10:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 16:10:34]  replicas=None
[2025-06-03 16:10:34]  scope=mc23_13p6TeV
[2025-06-03 16:10:34]  status=None
[2025-06-03 16:10:34]  status_code=0
[2025-06-03 16:10:34]  storage_token=
[2025-06-03 16:10:34]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6666594494/log.44871837._059924.job.log.tgz.1
[2025-06-03 16:10:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/98/log.44871837._059924.job.log.tgz.1
[2025-06-03 16:10:34]  workdir=None
[2025-06-03 16:10:34] ]
[2025-06-03 16:10:34] 2025-06-03 21:10:09,914 | INFO     | transferring file log.44871837._059924.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6666594494/log.44871837._059924.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-06-03 16:10:34] 2025-06-03 21:10:09,914 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6666594494/log.44871837._059924.job.log.tgz.1 /var/lib/boinc/slots/1/log.44871837._059924.job
[2025-06-03 16:10:34] 2025-06-03 21:10:09,926 | INFO     | adding to output.list: log.44871837._059924.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/98/log.44871837._059924.job.log.tg
[2025-06-03 16:10:34] 2025-06-03 21:10:09,927 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 16:10:34] 2025-06-03 21:10:09,927 | INFO     | summary of transferred files:
[2025-06-03 16:10:34] 2025-06-03 21:10:09,927 | INFO     |  -- lfn=log.44871837._059924.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 16:10:34] 2025-06-03 21:10:09,927 | INFO     | stage-out finished correctly
[2025-06-03 16:10:34] 2025-06-03 21:10:10,737 | INFO     | monitor loop #162: job 0:6666594494 is in state 'finished'
[2025-06-03 16:10:34] 2025-06-03 21:10:10,737 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 16:10:34] 2025-06-03 21:10:12,745 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 16:10:34] 2025-06-03 21:10:13,062 | INFO     | job 6666594494 has state=finished
[2025-06-03 16:10:34] 2025-06-03 21:10:13,062 | INFO     | preparing for final server update for job 6666594494 in state='finished'
[2025-06-03 16:10:34] 2025-06-03 21:10:13,063 | INFO     | this job has now completed (state=finished)
[2025-06-03 16:10:34] 2025-06-03 21:10:13,063 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 16:10:34] 2025-06-03 21:10:13,063 | INFO     | log transfer has been attempted: DONE
[2025-06-03 16:10:34] 2025-06-03 21:10:13,063 | INFO     | job 6666594494 has finished - writing final server update
[2025-06-03 16:10:34] 2025-06-03 21:10:13,063 | INFO     | total number of processed events: 400 (read)
[2025-06-03 16:10:34] 2025-06-03 21:10:13,064 | INFO     | executing command: lscpu
[2025-06-03 16:10:34] 2025-06-03 21:10:13,083 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 16:10:34] 2025-06-03 21:10:13,238 | INFO     | monitor loop #163: job 0:6666594494 is in state 'finished'
[2025-06-03 16:10:34] 2025-06-03 21:10:13,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 16:10:34] 2025-06-03 21:10:14,849 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 16:10:34] 2025-06-03 21:10:14,849 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6666594494/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 16:10:34] 2025-06-03 21:10:14,850 | INFO     | extracted standard info from prmon json
[2025-06-03 16:10:34] 2025-06-03 21:10:14,850 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 16:10:34] 2025-06-03 21:10:14,850 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 16:10:34] 2025-06-03 21:10:14,850 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 16:10:34] 2025-06-03 21:10:14,850 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 16:10:34] 2025-06-03 21:10:14,851 | INFO     | fitting pss+swap vs Time
[2025-06-03 16:10:34] 2025-06-03 21:10:14,851 | INFO     | sum of square deviations: 6094998.0
[2025-06-03 16:10:34] 2025-06-03 21:10:14,851 | INFO     | sum of deviations: 244179096.0
[2025-06-03 16:10:34] 2025-06-03 21:10:14,851 | INFO     | mean x: 1748984065.0
[2025-06-03 16:10:34] 2025-06-03 21:10:14,851 | INFO     | mean y: 2949461.0
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | -- intersect: -70065219209.45818
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | intersect: -70065219209.45818
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | chi2: 0.006497212410460171
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | -- intersect: -70065219209.45818
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | current memory leak: 40.06 B/s (using 27 data points, chi2=0.01)
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | ..............................
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | . Timing measurements:
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | . get job = 0 s
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | . initial setup = 2 s
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | . payload setup = 3 s
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | . stage-in = 0 s
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | . payload execution = 2040 s
[2025-06-03 16:10:34] 2025-06-03 21:10:14,852 | INFO     | . stage-out = 0 s
[2025-06-03 16:10:34] 2025-06-03 21:10:14,853 | INFO     | . log creation = 0 s
[2025-06-03 16:10:34] 2025-06-03 21:10:14,853 | INFO     | ..............................
[2025-06-03 16:10:34] 2025-06-03 21:10:14,879 | INFO     | 
[2025-06-03 16:10:34] 2025-06-03 21:10:14,879 | INFO     | job summary report
[2025-06-03 16:10:34] 2025-06-03 21:10:14,879 | INFO     | --------------------------------------------------
[2025-06-03 16:10:34] 2025-06-03 21:10:14,879 | INFO     | PanDA job id: 6666594494
[2025-06-03 16:10:34] 2025-06-03 21:10:14,879 | INFO     | task id: 44871837
[2025-06-03 16:10:34] 2025-06-03 21:10:14,879 | INFO     | errors: (none)
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | pilot state: finished 
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | transexitcode: 0
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | exeerrorcode: 0
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | exeerrordiag: 
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | exitcode: 0
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | exitmsg: OK
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | cpuconsumptiontime: 22196 s
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | nevents: 400
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | neventsw: 0
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | pid: 16318
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | pgrp: 16318
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | corecount: 12
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | event service: False
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | sizes: {0: 2405234, 3: 2405440, 11: 2405468, 2048: 2430503, 2049: 2439444, 2052: 2439500, 2054: 2439798}
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | --------------------------------------------------
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | 
[2025-06-03 16:10:34] 2025-06-03 21:10:14,880 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-03 16:10:34] 2025-06-03 21:10:14,889 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,889 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,889 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,889 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,889 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | job 6666594494 has completed (purged errors)
[2025-06-03 16:10:34] 2025-06-03 21:10:14,890 | INFO     | overall cleanup function is called
[2025-06-03 16:10:34] 2025-06-03 21:10:15,898 | INFO     | --- collectZombieJob: --- 10, [16318]
[2025-06-03 16:10:34] 2025-06-03 21:10:15,898 | INFO     | zombie collector waiting for pid 16318
[2025-06-03 16:10:34] 2025-06-03 21:10:15,898 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 16:10:34] 2025-06-03 21:10:15,898 | INFO     | collected zombie processes
[2025-06-03 16:10:34] 2025-06-03 21:10:15,899 | INFO     | will attempt to kill all subprocesses of pid=16318
[2025-06-03 16:10:34] 2025-06-03 21:10:15,958 | INFO     | process IDs to be killed: [16318] (in reverse order)
[2025-06-03 16:10:34] 2025-06-03 21:10:15,984 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 16:10:34] 2025-06-03 21:10:15,984 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 16:10:34] 2025-06-03 21:10:15,987 | INFO     | did not find any defunct processes belonging to 16318
[2025-06-03 16:10:34] 2025-06-03 21:10:15,989 | INFO     | did not find any defunct processes belonging to 16318
[2025-06-03 16:10:34] 2025-06-03 21:10:15,990 | INFO     | ready for new job
[2025-06-03 16:10:34] 2025-06-03 21:10:15,990 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 16:10:34] 2025-06-03 21:10:15,992 | INFO     | **************************************
[2025-06-03 16:10:34] 2025-06-03 21:10:15,992 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 16:10:34] 2025-06-03 21:10:15,992 | INFO     | **************************************
[2025-06-03 16:10:34] 2025-06-03 21:10:15,992 | INFO     | 
[2025-06-03 16:10:34] 2025-06-03 21:10:15,994 | INFO     | architecture information:
[2025-06-03 16:10:34] 2025-06-03 21:10:15,994 | INFO     | executing command: cat /etc/os-release
[2025-06-03 16:10:34] 2025-06-03 21:10:16,004 | INFO     | cat /etc/os-release:
[2025-06-03 16:10:34] NAME="CentOS Linux"
[2025-06-03 16:10:34] VERSION="7 (Core)"
[2025-06-03 16:10:34] ID="centos"
[2025-06-03 16:10:34] ID_LIKE="rhel fedora"
[2025-06-03 16:10:34] VERSION_ID="7"
[2025-06-03 16:10:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 16:10:34] ANSI_COLOR="0;31"
[2025-06-03 16:10:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 16:10:34] HOME_URL="https://www.centos.org/"
[2025-06-03 16:10:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 16:10:34] 
[2025-06-03 16:10:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 16:10:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 16:10:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 16:10:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 16:10:34] 
[2025-06-03 16:10:34] 2025-06-03 21:10:16,004 | INFO     | **************************************
[2025-06-03 16:10:34] 2025-06-03 21:10:16,506 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-03 16:10:34] 2025-06-03 21:10:16,517 | INFO     | sufficient remaining disk space (3889535385600 B)
[2025-06-03 16:10:34] 2025-06-03 21:10:16,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 16:10:34] 2025-06-03 21:10:16,517 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 16:10:34] 2025-06-03 21:10:16,517 | INFO     | update_server=False
[2025-06-03 16:10:34] 2025-06-03 21:10:16,518 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 16:10:34] 2025-06-03 21:10:16,518 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 16:10:34] 2025-06-03 21:10:16,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:10:34] 2025-06-03 21:10:16,518 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 16:10:34] 2025-06-03 21:10:16,518 | INFO     | all data control threads have been joined
[2025-06-03 16:10:34] 2025-06-03 21:10:16,518 | INFO     | all payload control threads have been joined
[2025-06-03 16:10:34] 2025-06-03 21:10:16,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 16:10:34] 2025-06-03 21:10:16,518 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 16:10:34] 2025-06-03 21:10:16,619 | INFO     | all job control threads have been joined
[2025-06-03 16:10:34] 2025-06-03 21:10:16,746 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:10:34] 2025-06-03 21:10:16,746 | INFO     | aborting loop
[2025-06-03 16:10:34] 2025-06-03 21:10:17,522 | INFO     | [payload] control thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:17,522 | INFO     | [job] queue monitor thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:17,523 | INFO     | [job] retrieve thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:17,523 | INFO     | [data] control thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:17,526 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:17,624 | INFO     | [job] control thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:17,751 | INFO     | [job] job monitor thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:17,850 | INFO     | [data] copytool_in thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:17,962 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 16:10:34] 2025-06-03 21:10:18,024 | INFO     | [payload] failed_post thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:18,170 | INFO     | [job] validate thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:18,242 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:18,436 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:18,632 | INFO     | [payload] validate_post thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:18,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 16:10:34] 2025-06-03 21:10:19,968 | INFO     | [data] copytool_out thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:22,799 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:26,838 | INFO     | job.realtimelogging is not enabled
[2025-06-03 16:10:34] 2025-06-03 21:10:27,842 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 16:10:34] 2025-06-03 21:10:29,082 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139843083888448)>', '<ExcThread(monitor, started 139842440648448)>']
[2025-06-03 16:10:34] 2025-06-03 21:10:29,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 16:10:34] 2025-06-03 21:10:29,572 | INFO     | [monitor] control thread has ended
[2025-06-03 16:10:34] 2025-06-03 21:10:34,106 | INFO     | all workflow threads have been joined
[2025-06-03 16:10:34] 2025-06-03 21:10:34,106 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 16:10:34] 2025-06-03 21:10:34,106 | INFO     | traces error code: 0
[2025-06-03 16:10:34] 2025-06-03 21:10:34,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 16:10:34] 2025-06-03 21:10:34,151 [wrapper] ==== pilot stdout END ====
[2025-06-03 16:10:34] 2025-06-03 21:10:34,152 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 16:10:34] 2025-06-03 21:10:34,154 [wrapper] pilotpid: 9227
[2025-06-03 16:10:34] 2025-06-03 21:10:34,156 [wrapper] Pilot exit status: 0
[2025-06-03 16:10:34] 2025-06-03 21:10:34,162 [wrapper] pandaids: 6666594494
[2025-06-03 16:10:34] 2025-06-03 21:10:34,176 [wrapper] cleanup supervisor_pilot 29186 9228
[2025-06-03 16:10:34] 2025-06-03 21:10:34,177 [wrapper] Test setup, not cleaning
[2025-06-03 16:10:34] 2025-06-03 21:10:34,179 [wrapper] apfmon messages muted
[2025-06-03 16:10:34] 2025-06-03 21:10:34,181 [wrapper] ==== wrapper stdout END ====
[2025-06-03 16:10:34] 2025-06-03 21:10:34,182 [wrapper] ==== wrapper stderr END ====
[2025-06-03 16:10:34]  *** Error codes and diagnostics ***
[2025-06-03 16:10:34]     "exeErrorCode": 0,
[2025-06-03 16:10:34]     "exeErrorDiag": "",
[2025-06-03 16:10:34]     "pilotErrorCode": 0,
[2025-06-03 16:10:34]     "pilotErrorDiag": "",
[2025-06-03 16:10:34]  *** Listing of results directory ***
[2025-06-03 16:10:34] total 418712
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc    495897 May 26 20:12 pilot3.tar.gz
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc      5111 May 26 20:19 queuedata.json
[2025-06-03 16:10:34] -rwx------ 1 boinc boinc     37140 May 26 20:20 runpilot2-wrapper.sh
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc       100 Jun  3 15:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 16:10:34] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 15:35 run_atlas
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc       105 Jun  3 15:35 job.xml
[2025-06-03 16:10:34] -rw-r--r-- 2 boinc boinc     15093 Jun  3 15:35 start_atlas.sh
[2025-06-03 16:10:34] drwxrwx--x 1 boinc boinc        76 Jun  3 15:35 shared
[2025-06-03 16:10:34] -rw-r--r-- 2 boinc boinc    508883 Jun  3 15:35 input.tar.gz
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc     10044 Jun  3 15:35 init_data.xml
[2025-06-03 16:10:34] -rw-r--r-- 2 boinc boinc 223657001 Jun  3 15:35 EVNT.44871834._002367.pool.root.1
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc         0 Jun  3 15:35 boinc_lockfile
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc      2559 Jun  3 15:35 pandaJob.out
[2025-06-03 16:10:34] -rw------- 1 boinc boinc    986853 Jun  3 15:35 agis_schedconf.cvmfs.json
[2025-06-03 16:10:34] -rw------- 1 boinc boinc   1603667 Jun  3 15:35 agis_ddmendpoints.agis.ALL.json
[2025-06-03 16:10:34] drwx------ 1 boinc boinc       368 Jun  3 15:35 pilot3
[2025-06-03 16:10:34] -rw------- 1 boinc boinc 200112414 Jun  3 16:09 HITS.44871837._059924.pool.root.1
[2025-06-03 16:10:34] -rw------- 1 boinc boinc        95 Jun  3 16:09 pilot_heartbeat.json
[2025-06-03 16:10:34] -rw------- 1 boinc boinc      1033 Jun  3 16:10 memory_monitor_summary.json
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc       529 Jun  3 16:10 boinc_task_state.xml
[2025-06-03 16:10:34] -rw------- 1 boinc boinc    345347 Jun  3 16:10 log.44871837._059924.job.log.tgz.1
[2025-06-03 16:10:34] -rw------- 1 boinc boinc      7693 Jun  3 16:10 heartbeat.json
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc        27 Jun  3 16:10 wrapper_checkpoint.txt
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc      8192 Jun  3 16:10 boinc_mmap_file
[2025-06-03 16:10:34] -rw------- 1 boinc boinc      4550 Jun  3 16:10 pilotlog.txt
[2025-06-03 16:10:34] -rw------- 1 boinc boinc    238806 Jun  3 16:10 log.44871837._059924.job.log.1
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc       620 Jun  3 16:10 runtime_log
[2025-06-03 16:10:34] -rw------- 1 boinc boinc    604160 Jun  3 16:10 result.tar.gz
[2025-06-03 16:10:34] -rw------- 1 boinc boinc       357 Jun  3 16:10 output.list
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc      8683 Jun  3 16:10 runtime_log.err
[2025-06-03 16:10:34] -rw------- 1 boinc boinc       651 Jun  3 16:10 d0PNDmSAyd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmt7QKDm7xnFVo.diag
[2025-06-03 16:10:34] -rw-r--r-- 1 boinc boinc     20861 Jun  3 16:10 stderr.txt
[2025-06-03 16:10:34] HITS file was successfully produced:
[2025-06-03 16:10:34] -rw------- 1 boinc boinc 200112414 Jun  3 16:09 shared/HITS.pool.root.1
[2025-06-03 16:10:34]  *** Contents of shared directory: ***
[2025-06-03 16:10:34] total 414948
[2025-06-03 16:10:34] -rw-r--r-- 2 boinc boinc     15093 Jun  3 15:35 start_atlas.sh
[2025-06-03 16:10:34] -rw-r--r-- 2 boinc boinc    508883 Jun  3 15:35 input.tar.gz
[2025-06-03 16:10:34] -rw-r--r-- 2 boinc boinc 223657001 Jun  3 15:35 ATLAS.root_0
[2025-06-03 16:10:34] -rw------- 1 boinc boinc 200112414 Jun  3 16:09 HITS.pool.root.1
[2025-06-03 16:10:34] -rw------- 1 boinc boinc    604160 Jun  3 16:10 result.tar.gz
16:10:35 (5382): run_atlas exited; CPU time 22205.199235
16:10:35 (5382): called boinc_finish(0)

</stderr_txt>
]]>

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