Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:41:38 (17061): wrapper (7.7.26015): starting
12:41:38 (17061): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 12:41:38] Arguments: --nthreads 4
[2025-06-03 12:41:38] Threads: 4
[2025-06-03 12:41:38] Checking for CVMFS
[2025-06-03 12:41:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 12:41:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 12:41:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 12:41:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 12:41:38] 2.11.2.0 2843 34495 77056 146749 1 62 12820103 20275201 1 130560 0 11315345 99.978 6709357 7703 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 12:41:38] CVMFS is ok
[2025-06-03 12:41:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 12:41:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 12:41:38] Further information can be found at the LHC@home message board.
[2025-06-03 12:41:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:41:38] Checking for apptainer binary...
[2025-06-03 12:41:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 12:41:38] Running /usr/bin/apptainer --version
[2025-06-03 12:41:38] apptainer version 1.3.2-1.el7
[2025-06-03 12:41:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:41:40] c-204-23.aglt2.org
[2025-06-03 12:41:40] apptainer works
[2025-06-03 12:41:40] Set ATHENA_PROC_NUMBER=4
[2025-06-03 12:41:40] Set ATHENA_CORE_NUMBER=4
[2025-06-03 12:41:40] Starting ATLAS job with PandaID=6677677402
[2025-06-03 12:41:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:10:24 (16759): wrapper (7.7.26015): starting
15:10:24 (16759): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 15:10:24] Arguments: --nthreads 8
[2025-06-03 15:10:24] Threads: 8
[2025-06-03 15:10:24] This job has been restarted, cleaning up previous attempt
[2025-06-03 15:10:24] Checking for CVMFS
[2025-06-03 15:10:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 15:10:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 15:10:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 15:10:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 15:10:25] 2.11.2.0 2843 34644 72128 146752 0 38 12860473 20275201 1 130560 0 11402773 99.978 6713330 7707 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 15:10:25] CVMFS is ok
[2025-06-03 15:10:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 15:10:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 15:10:25] Further information can be found at the LHC@home message board.
[2025-06-03 15:10:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 15:10:25] Checking for apptainer binary...
[2025-06-03 15:10:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 15:10:25] Running /usr/bin/apptainer --version
[2025-06-03 15:10:25] apptainer version 1.3.2-1.el7
[2025-06-03 15:10:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 15:10:27] c-204-23.aglt2.org
[2025-06-03 15:10:27] apptainer works
[2025-06-03 15:10:27] Set ATHENA_PROC_NUMBER=8
[2025-06-03 15:10:27] Set ATHENA_CORE_NUMBER=8
[2025-06-03 15:10:27] Starting ATLAS job with PandaID=6677677402
[2025-06-03 15:10:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 17:07:00]  *** The last 200 lines of the pilot log: ***
[2025-06-03 17:07:00] 2025-06-03 21:06:46,632 | INFO     | mean x: 1748981323.5
[2025-06-03 17:07:00] 2025-06-03 21:06:46,632 | INFO     | mean y: 2440054.51754386
[2025-06-03 17:07:00] 2025-06-03 21:06:46,632 | INFO     | -- intersect: -27844618662.35368
[2025-06-03 17:07:00] 2025-06-03 21:06:46,632 | INFO     | intersect: -27844618662.35368
[2025-06-03 17:07:00] 2025-06-03 21:06:46,632 | INFO     | chi2: 2.255356162464011
[2025-06-03 17:07:00] 2025-06-03 21:06:46,633 | INFO     | sum of square deviations: 401533110.0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,633 | INFO     | sum of deviations: 14434597139.999998
[2025-06-03 17:07:00] 2025-06-03 21:06:46,634 | INFO     | mean x: 1748981171.0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,634 | INFO     | mean y: 2458119.100917431
[2025-06-03 17:07:00] 2025-06-03 21:06:46,634 | INFO     | -- intersect: -62871157979.03467
[2025-06-03 17:07:00] 2025-06-03 21:06:46,634 | INFO     | intersect: -62871157979.03467
[2025-06-03 17:07:00] 2025-06-03 21:06:46,635 | INFO     | chi2: 1.4573421026678373
[2025-06-03 17:07:00] 2025-06-03 21:06:46,635 | INFO     | current chi2=1.4573421026678373 (change=35.38306157925546 %)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,635 | INFO     | sum of square deviations: 348769330.0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,636 | INFO     | sum of deviations: 13807652499.0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,636 | INFO     | mean x: 1748981018.5
[2025-06-03 17:07:00] 2025-06-03 21:06:46,636 | INFO     | mean y: 2456305.826923077
[2025-06-03 17:07:00] 2025-06-03 21:06:46,636 | INFO     | -- intersect: -69239073993.85594
[2025-06-03 17:07:00] 2025-06-03 21:06:46,636 | INFO     | intersect: -69239073993.85594
[2025-06-03 17:07:00] 2025-06-03 21:06:46,636 | INFO     | chi2: 1.4596419903930875
[2025-06-03 17:07:00] 2025-06-03 21:06:46,637 | INFO     | current chi2=1.4596419903930875 (change=-0.1578138531124595 %)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,637 | INFO     | right removable region: 103
[2025-06-03 17:07:00] 2025-06-03 21:06:46,637 | INFO     | sum of square deviations: 401533110.0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,638 | INFO     | sum of deviations: -9370485415.0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,638 | INFO     | mean x: 1748981476.0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,638 | INFO     | mean y: 2483204.018348624
[2025-06-03 17:07:00] 2025-06-03 21:06:46,638 | INFO     | -- intersect: 40818059812.291504
[2025-06-03 17:07:00] 2025-06-03 21:06:46,638 | INFO     | intersect: 40818059812.291504
[2025-06-03 17:07:00] 2025-06-03 21:06:46,639 | INFO     | chi2: 0.8588979477502765
[2025-06-03 17:07:00] 2025-06-03 21:06:46,639 | INFO     | current chi2=0.8588979477502765 (change=61.917414107583014 %)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,639 | INFO     | sum of square deviations: 348769330.0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,640 | INFO     | sum of deviations: -10150318626.0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,640 | INFO     | mean x: 1748981628.5
[2025-06-03 17:07:00] 2025-06-03 21:06:46,640 | INFO     | mean y: 2485335.2115384615
[2025-06-03 17:07:00] 2025-06-03 21:06:46,640 | INFO     | -- intersect: 50903522993.24002
[2025-06-03 17:07:00] 2025-06-03 21:06:46,640 | INFO     | intersect: 50903522993.24002
[2025-06-03 17:07:00] 2025-06-03 21:06:46,641 | INFO     | sufficient remaining disk space (18610126848 B)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,641 | INFO     | chi2: 0.8415875555974084
[2025-06-03 17:07:00] 2025-06-03 21:06:46,642 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,642 | INFO     | current chi2=0.8415875555974084 (change=2.0154189677841785 %)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,642 | INFO     | left removable region: 20
[2025-06-03 17:07:00] 2025-06-03 21:06:46,642 | INFO     | sum of square deviations: 177275882.0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,643 | INFO     | sum of deviations: -1453045559.000001
[2025-06-03 17:07:00] 2025-06-03 21:06:46,643 | INFO     | mean x: 1748981598.0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,643 | INFO     | mean y: 2502917.795180723
[2025-06-03 17:07:00] 2025-06-03 21:06:46,643 | INFO     | -- intersect: 14338067999.04309
[2025-06-03 17:07:00] 2025-06-03 21:06:46,643 | INFO     | intersect: 14338067999.04309
[2025-06-03 17:07:00] 2025-06-03 21:06:46,644 | INFO     | chi2: 0.005487430263858494
[2025-06-03 17:07:00] 2025-06-03 21:06:46,644 | INFO     | -- intersect: 14338067999.04309
[2025-06-03 17:07:00] 2025-06-03 21:06:46,644 | INFO     | current memory leak: -8.20 B/s (using 83 data points, chi2=0.01)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,645 | INFO     | ..............................
[2025-06-03 17:07:00] 2025-06-03 21:06:46,645 | INFO     | . Timing measurements:
[2025-06-03 17:07:00] 2025-06-03 21:06:46,645 | INFO     | . get job = 0 s
[2025-06-03 17:07:00] 2025-06-03 21:06:46,645 | INFO     | . initial setup = 1 s
[2025-06-03 17:07:00] 2025-06-03 21:06:46,645 | INFO     | . payload setup = 12 s
[2025-06-03 17:07:00] 2025-06-03 21:06:46,646 | INFO     | . stage-in = 0 s
[2025-06-03 17:07:00] 2025-06-03 21:06:46,646 | INFO     | . payload execution = 6921 s
[2025-06-03 17:07:00] 2025-06-03 21:06:46,646 | INFO     | . stage-out = 2 s
[2025-06-03 17:07:00] 2025-06-03 21:06:46,646 | INFO     | . log creation = 0 s
[2025-06-03 17:07:00] 2025-06-03 21:06:46,646 | INFO     | ..............................
[2025-06-03 17:07:00] 2025-06-03 21:06:46,744 | INFO     | 
[2025-06-03 17:07:00] 2025-06-03 21:06:46,744 | INFO     | job summary report
[2025-06-03 17:07:00] 2025-06-03 21:06:46,744 | INFO     | --------------------------------------------------
[2025-06-03 17:07:00] 2025-06-03 21:06:46,744 | INFO     | PanDA job id: 6677677402
[2025-06-03 17:07:00] 2025-06-03 21:06:46,744 | INFO     | task id: 45006595
[2025-06-03 17:07:00] 2025-06-03 21:06:46,745 | INFO     | errors: (none)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,745 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 17:07:00] 2025-06-03 21:06:46,745 | INFO     | pilot state: finished 
[2025-06-03 17:07:00] 2025-06-03 21:06:46,745 | INFO     | transexitcode: 0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,745 | INFO     | exeerrorcode: 0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,746 | INFO     | exeerrordiag: 
[2025-06-03 17:07:00] 2025-06-03 21:06:46,746 | INFO     | exitcode: 0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,746 | INFO     | exitmsg: OK
[2025-06-03 17:07:00] 2025-06-03 21:06:46,746 | INFO     | cpuconsumptiontime: 49781 s
[2025-06-03 17:07:00] 2025-06-03 21:06:46,746 | INFO     | nevents: 400
[2025-06-03 17:07:00] 2025-06-03 21:06:46,747 | INFO     | neventsw: 0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,747 | INFO     | pid: 27256
[2025-06-03 17:07:00] 2025-06-03 21:06:46,747 | INFO     | pgrp: 27256
[2025-06-03 17:07:00] 2025-06-03 21:06:46,747 | INFO     | corecount: 8
[2025-06-03 17:07:00] 2025-06-03 21:06:46,748 | INFO     | event service: False
[2025-06-03 17:07:00] 2025-06-03 21:06:46,748 | INFO     | sizes: {0: 2405184, 6: 2405390, 11: 2405418, 6936: 2432571, 6940: 2441568, 6947: 2441682}
[2025-06-03 17:07:00] 2025-06-03 21:06:46,748 | INFO     | --------------------------------------------------
[2025-06-03 17:07:00] 2025-06-03 21:06:46,748 | INFO     | 
[2025-06-03 17:07:00] 2025-06-03 21:06:46,749 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 17:07:00] 2025-06-03 21:06:46,749 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6677677402: 3452591 B (within 2537553920 B limit)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,753 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6677677402/HITS.45006595._037212.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,754 | INFO     | total size of present files: 0 B (workdir size: 3452591 B)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,754 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6677677402/HITS.45006595._037212.pool.root.1 since it does not exist
[2025-06-03 17:07:00] 2025-06-03 21:06:46,776 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,777 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,777 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,777 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,778 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,780 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,780 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,780 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,780 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,781 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,781 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,781 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,782 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,782 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 17:07:00] 2025-06-03 21:06:46,782 | INFO     | job 6677677402 has completed (purged errors)
[2025-06-03 17:07:00] 2025-06-03 21:06:46,782 | INFO     | overall cleanup function is called
[2025-06-03 17:07:00] 2025-06-03 21:06:46,856 | INFO     | number of running child processes to parent process 27256: 1
[2025-06-03 17:07:00] 2025-06-03 21:06:46,857 | INFO     | maximum number of monitored processes: 6
[2025-06-03 17:07:00] 2025-06-03 21:06:46,857 | INFO     | aborting job monitoring since job object (job id=6677677402) has expired
[2025-06-03 17:07:00] 2025-06-03 21:06:47,792 | INFO     | --- collectZombieJob: --- 10, [27256]
[2025-06-03 17:07:00] 2025-06-03 21:06:47,792 | INFO     | zombie collector waiting for pid 27256
[2025-06-03 17:07:00] 2025-06-03 21:06:47,793 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 17:07:00] 2025-06-03 21:06:47,793 | INFO     | collected zombie processes
[2025-06-03 17:07:00] 2025-06-03 21:06:47,793 | INFO     | will attempt to kill all subprocesses of pid=27256
[2025-06-03 17:07:00] 2025-06-03 21:06:47,886 | INFO     | process IDs to be killed: [27256] (in reverse order)
[2025-06-03 17:07:00] 2025-06-03 21:06:47,946 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 17:07:00] 2025-06-03 21:06:47,947 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 17:07:00] 2025-06-03 21:06:47,952 | INFO     | did not find any defunct processes belonging to 27256
[2025-06-03 17:07:00] 2025-06-03 21:06:47,955 | INFO     | did not find any defunct processes belonging to 27256
[2025-06-03 17:07:00] 2025-06-03 21:06:47,956 | INFO     | ready for new job
[2025-06-03 17:07:00] 2025-06-03 21:06:47,956 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 17:07:00] 2025-06-03 21:06:47,958 | INFO     | **************************************
[2025-06-03 17:07:00] 2025-06-03 21:06:47,959 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 17:07:00] 2025-06-03 21:06:47,959 | INFO     | **************************************
[2025-06-03 17:07:00] 2025-06-03 21:06:47,959 | INFO     | 
[2025-06-03 17:07:00] 2025-06-03 21:06:47,960 | INFO     | architecture information:
[2025-06-03 17:07:00] 2025-06-03 21:06:47,961 | INFO     | executing command: cat /etc/os-release
[2025-06-03 17:07:00] 2025-06-03 21:06:47,978 | INFO     | cat /etc/os-release:
[2025-06-03 17:07:00] NAME="CentOS Linux"
[2025-06-03 17:07:00] VERSION="7 (Core)"
[2025-06-03 17:07:00] ID="centos"
[2025-06-03 17:07:00] ID_LIKE="rhel fedora"
[2025-06-03 17:07:00] VERSION_ID="7"
[2025-06-03 17:07:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 17:07:00] ANSI_COLOR="0;31"
[2025-06-03 17:07:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 17:07:00] HOME_URL="https://www.centos.org/"
[2025-06-03 17:07:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 17:07:00] 
[2025-06-03 17:07:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 17:07:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 17:07:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 17:07:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 17:07:00] 
[2025-06-03 17:07:00] 2025-06-03 21:06:47,979 | INFO     | **************************************
[2025-06-03 17:07:00] 2025-06-03 21:06:48,482 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 17:07:00] 2025-06-03 21:06:48,502 | INFO     | sufficient remaining disk space (18614321152 B)
[2025-06-03 17:07:00] 2025-06-03 21:06:48,502 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 17:07:00] 2025-06-03 21:06:48,503 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 17:07:00] 2025-06-03 21:06:48,503 | INFO     | update_server=False
[2025-06-03 17:07:00] 2025-06-03 21:06:48,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 17:07:00] 2025-06-03 21:06:48,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:07:00] 2025-06-03 21:06:48,504 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:07:00] 2025-06-03 21:06:48,504 | INFO     | aborting loop
[2025-06-03 17:07:00] 2025-06-03 21:06:48,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 17:07:00] 2025-06-03 21:06:48,505 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 17:07:00] 2025-06-03 21:06:48,506 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 17:07:00] 2025-06-03 21:06:48,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 17:07:00] 2025-06-03 21:06:48,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 17:07:00] 2025-06-03 21:06:48,601 | INFO     | all job control threads have been joined
[2025-06-03 17:07:00] 2025-06-03 21:06:48,663 | INFO     | all payload control threads have been joined
[2025-06-03 17:07:00] 2025-06-03 21:06:49,112 | INFO     | all data control threads have been joined
[2025-06-03 17:07:00] 2025-06-03 21:06:49,509 | INFO     | [job] retrieve thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:49,509 | INFO     | [job] queue monitor thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:49,510 | INFO     | [job] job monitor thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:49,607 | INFO     | [job] control thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:49,669 | INFO     | [payload] control thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:49,966 | INFO     | [job] validate thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:50,118 | INFO     | [data] control thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:50,266 | INFO     | [payload] failed_post thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:50,268 | INFO     | [payload] validate_post thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:50,274 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:50,274 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:50,309 | INFO     | [data] copytool_in thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:50,333 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:50,389 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 17:07:00] 2025-06-03 21:06:50,511 | INFO     | [data] copytool_out thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:50,854 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:54,394 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 17:07:00] 2025-06-03 21:06:54,680 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140657361200960)>', '<ExcThread(monitor, started 140656471168768)>']
[2025-06-03 17:07:00] 2025-06-03 21:06:55,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 17:07:00] 2025-06-03 21:06:55,537 | INFO     | [monitor] control thread has ended
[2025-06-03 17:07:00] 2025-06-03 21:06:59,707 | INFO     | all workflow threads have been joined
[2025-06-03 17:07:00] 2025-06-03 21:06:59,715 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 17:07:00] 2025-06-03 21:06:59,715 | INFO     | traces error code: 0
[2025-06-03 17:07:00] 2025-06-03 21:06:59,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 17:07:00] 2025-06-03 21:06:59,844 [wrapper] ==== pilot stdout END ====
[2025-06-03 17:07:00] 2025-06-03 21:06:59,848 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 17:07:00] 2025-06-03 21:06:59,854 [wrapper] pilotpid: 20784
[2025-06-03 17:07:00] 2025-06-03 21:06:59,859 [wrapper] Pilot exit status: 0
[2025-06-03 17:07:00] 2025-06-03 21:06:59,884 [wrapper] pandaids: 6677677402 6677677402
[2025-06-03 17:07:00] 2025-06-03 21:06:59,930 [wrapper] cleanup supervisor_pilot  6950 20785
[2025-06-03 17:07:00] 2025-06-03 21:06:59,935 [wrapper] Test setup, not cleaning
[2025-06-03 17:07:00] 2025-06-03 21:06:59,940 [wrapper] apfmon messages muted
[2025-06-03 17:07:00] 2025-06-03 21:06:59,945 [wrapper] ==== wrapper stdout END ====
[2025-06-03 17:07:00] 2025-06-03 21:06:59,949 [wrapper] ==== wrapper stderr END ====
[2025-06-03 17:07:00]  *** Error codes and diagnostics ***
[2025-06-03 17:07:00]     "exeErrorCode": 0,
[2025-06-03 17:07:00]     "exeErrorDiag": "",
[2025-06-03 17:07:00]     "pilotErrorCode": 0,
[2025-06-03 17:07:00]     "pilotErrorDiag": "",
[2025-06-03 17:07:00]  *** Listing of results directory ***
[2025-06-03 17:07:00] total 598060
[2025-06-03 17:07:00] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 11:35 pilot3.tar.gz
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 11:41 queuedata.json
[2025-06-03 17:07:00] -rwx------ 1 boincer umatlas     37140 Jun  3 11:41 runpilot2-wrapper.sh
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas       100 Jun  3 12:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 17:07:00] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 12:41 run_atlas
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas       105 Jun  3 12:41 job.xml
[2025-06-03 17:07:00] -rw-r--r-- 3 boincer umatlas 213856888 Jun  3 12:41 EVNT.45006593._001495.pool.root.1
[2025-06-03 17:07:00] -rw-r--r-- 3 boincer umatlas 213856888 Jun  3 12:41 ATLAS.root_0
[2025-06-03 17:07:00] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 12:41 start_atlas.sh
[2025-06-03 17:07:00] drwxrwx--x 2 boincer umatlas      4096 Jun  3 12:41 shared
[2025-06-03 17:07:00] -rw-r--r-- 2 boincer umatlas    508879 Jun  3 12:41 input.tar.gz
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas         0 Jun  3 12:41 boinc_lockfile
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 15:10 pandaJob.out
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas    986893 Jun  3 15:10 agis_schedconf.cvmfs.json
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas      5906 Jun  3 17:01 init_data.xml
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas 178948418 Jun  3 17:06 HITS.45006595._037212.pool.root.1
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas       531 Jun  3 17:06 boinc_task_state.xml
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas        96 Jun  3 17:06 pilot_heartbeat.json
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas      1048 Jun  3 17:06 memory_monitor_summary.json
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas   1603667 Jun  3 17:06 agis_ddmendpoints.agis.ALL.json
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas    319877 Jun  3 17:06 log.45006595._037212.job.log.tgz.1
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 17:06 boinc_mmap_file
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas        28 Jun  3 17:06 wrapper_checkpoint.txt
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas      7743 Jun  3 17:06 heartbeat.json
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas      4476 Jun  3 17:06 pilotlog.txt
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas    638486 Jun  3 17:06 log.45006595._037212.job.log.1
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas       357 Jun  3 17:07 output.list
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas       620 Jun  3 17:07 runtime_log
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas    972800 Jun  3 17:07 result.tar.gz
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas       785 Jun  3 17:07 5L4LDmWwig7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlrkKDmviYtHo.diag
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas      8744 Jun  3 17:07 runtime_log.err
[2025-06-03 17:07:00] -rw-r--r-- 1 boincer umatlas     23292 Jun  3 17:07 stderr.txt
[2025-06-03 17:07:00] HITS file was successfully produced:
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas 178948418 Jun  3 17:06 shared/HITS.pool.root.1
[2025-06-03 17:07:00]  *** Contents of shared directory: ***
[2025-06-03 17:07:00] total 385076
[2025-06-03 17:07:00] -rw-r--r-- 3 boincer umatlas 213856888 Jun  3 12:41 ATLAS.root_0
[2025-06-03 17:07:00] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 12:41 start_atlas.sh
[2025-06-03 17:07:00] -rw-r--r-- 2 boincer umatlas    508879 Jun  3 12:41 input.tar.gz
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas 178948418 Jun  3 17:06 HITS.pool.root.1
[2025-06-03 17:07:00] -rw------- 1 boincer umatlas    972800 Jun  3 17:07 result.tar.gz
17:07:01 (16759): run_atlas exited; CPU time 49732.943397
17:07:01 (16759): called boinc_finish(0)

</stderr_txt>
]]>

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