Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:40:17 (3985987): wrapper (7.7.26015): starting
12:40:17 (3985987): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 12:40:17] Arguments: --nthreads 8
[2025-06-03 12:40:17] Threads: 8
[2025-06-03 12:40:17] Checking for CVMFS
[2025-06-03 12:40:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 12:40:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 12:40:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 12:40:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 12:40:17] 2.12.6.0 1303481 22098 299704 146749 0 197 27314189 32935937 4493 16776704 0 68618961 99.643 72003052 34284 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 12:40:17] CVMFS is ok
[2025-06-03 12:40:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 12:40:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 12:40:17] Further information can be found at the LHC@home message board.
[2025-06-03 12:40:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:40:17] Checking for apptainer binary...
[2025-06-03 12:40:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 12:40:17] Running /usr/bin/apptainer --version
[2025-06-03 12:40:17] apptainer version 1.4.1-1.el9
[2025-06-03 12:40:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:40:18] c6-6-39-4.aglt2.org
[2025-06-03 12:40:18] apptainer works
[2025-06-03 12:40:18] Set ATHENA_PROC_NUMBER=8
[2025-06-03 12:40:18] Set ATHENA_CORE_NUMBER=8
[2025-06-03 12:40:18] Starting ATLAS job with PandaID=6677677354
[2025-06-03 12:40:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:50:03]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:50:03]  is_tar=False
[2025-06-03 13:50:03]  lfn=log.45006595._037164.job.log.tgz.1
[2025-06-03 13:50:03]  mtime=0
[2025-06-03 13:50:03]  protocol_id=None
[2025-06-03 13:50:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 13:50:03]  replicas=None
[2025-06-03 13:50:03]  scope=mc23_13p6TeV
[2025-06-03 13:50:03]  status=None
[2025-06-03 13:50:03]  status_code=0
[2025-06-03 13:50:03]  storage_token=
[2025-06-03 13:50:03]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6677677354/log.45006595._037164.job.log.tgz.1
[2025-06-03 13:50:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/9b/log.45006595._037164.job.log.tgz.1
[2025-06-03 13:50:03]  workdir=None
[2025-06-03 13:50:03] ]
[2025-06-03 13:50:03] 2025-06-03 17:49:36,165 | INFO     | transferring file log.45006595._037164.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6677677354/log.45006595._037164.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 13:50:03] 2025-06-03 17:49:36,165 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6677677354/log.45006595._037164.job.log.tgz.1 /tmp/boinchome/slots/5/log.45006595._037164.job
[2025-06-03 13:50:03] 2025-06-03 17:49:36,181 | INFO     | adding to output.list: log.45006595._037164.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/9b/log.45006595._037164.job.log.tg
[2025-06-03 13:50:03] 2025-06-03 17:49:36,182 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 13:50:03] 2025-06-03 17:49:36,182 | INFO     | summary of transferred files:
[2025-06-03 13:50:03] 2025-06-03 17:49:36,182 | INFO     |  -- lfn=log.45006595._037164.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 13:50:03] 2025-06-03 17:49:36,182 | INFO     | stage-out finished correctly
[2025-06-03 13:50:03] 2025-06-03 17:49:36,904 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 13:50:03] 2025-06-03 17:49:38,293 | INFO     | monitor loop #312: job 0:6677677354 is in state 'finished'
[2025-06-03 13:50:03] 2025-06-03 17:49:38,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:50:03] 2025-06-03 17:49:39,427 | INFO     | job 6677677354 has state=finished
[2025-06-03 13:50:03] 2025-06-03 17:49:39,427 | INFO     | preparing for final server update for job 6677677354 in state='finished'
[2025-06-03 13:50:03] 2025-06-03 17:49:39,488 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-03 13:50:03] 2025-06-03 17:49:39,488 | INFO     | this job has now completed (state=finished)
[2025-06-03 13:50:03] 2025-06-03 17:49:39,488 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 13:50:03] 2025-06-03 17:49:39,488 | INFO     | log transfer has been attempted: DONE
[2025-06-03 13:50:03] 2025-06-03 17:49:39,488 | INFO     | job 6677677354 has finished - writing final server update
[2025-06-03 13:50:03] 2025-06-03 17:49:39,489 | INFO     | total number of processed events: 400 (read)
[2025-06-03 13:50:03] 2025-06-03 17:49:39,504 | INFO     | executing command: lscpu
[2025-06-03 13:50:03] 2025-06-03 17:49:39,563 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 13:50:03] 2025-06-03 17:49:40,796 | INFO     | monitor loop #313: job 0:6677677354 is in state 'finished'
[2025-06-03 13:50:03] 2025-06-03 17:49:40,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:50:03] 2025-06-03 17:49:43,118 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 13:50:03] 2025-06-03 17:49:43,119 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6677677354/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:50:03] 2025-06-03 17:49:43,119 | INFO     | extracted standard info from prmon json
[2025-06-03 13:50:03] 2025-06-03 17:49:43,119 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:50:03] 2025-06-03 17:49:43,120 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:50:03] 2025-06-03 17:49:43,120 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:50:03] 2025-06-03 17:49:43,120 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:50:03] 2025-06-03 17:49:43,122 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:50:03] 2025-06-03 17:49:43,122 | INFO     | sum of square deviations: 70364110.0
[2025-06-03 13:50:03] 2025-06-03 17:49:43,123 | INFO     | sum of deviations: 6613744561.999999
[2025-06-03 13:50:03] 2025-06-03 17:49:43,123 | INFO     | mean x: 1748970987.0
[2025-06-03 13:50:03] 2025-06-03 17:49:43,123 | INFO     | mean y: 2140198.819672131
[2025-06-03 13:50:03] 2025-06-03 17:49:43,123 | INFO     | -- intersect: -164389157500.6328
[2025-06-03 13:50:03] 2025-06-03 17:49:43,123 | INFO     | intersect: -164389157500.6328
[2025-06-03 13:50:03] 2025-06-03 17:49:43,123 | INFO     | chi2: 1.0223962873499732
[2025-06-03 13:50:03] 2025-06-03 17:49:43,123 | INFO     | -- intersect: -164389157500.6328
[2025-06-03 13:50:03] 2025-06-03 17:49:43,123 | INFO     | current memory leak: 93.99 B/s (using 61 data points, chi2=1.02)
[2025-06-03 13:50:03] 2025-06-03 17:49:43,124 | INFO     | ..............................
[2025-06-03 13:50:03] 2025-06-03 17:49:43,124 | INFO     | . Timing measurements:
[2025-06-03 13:50:03] 2025-06-03 17:49:43,124 | INFO     | . get job = 0 s
[2025-06-03 13:50:03] 2025-06-03 17:49:43,124 | INFO     | . initial setup = 2 s
[2025-06-03 13:50:03] 2025-06-03 17:49:43,124 | INFO     | . payload setup = 5 s
[2025-06-03 13:50:03] 2025-06-03 17:49:43,124 | INFO     | . stage-in = 0 s
[2025-06-03 13:50:03] 2025-06-03 17:49:43,124 | INFO     | . payload execution = 4123 s
[2025-06-03 13:50:03] 2025-06-03 17:49:43,124 | INFO     | . stage-out = 0 s
[2025-06-03 13:50:03] 2025-06-03 17:49:43,124 | INFO     | . log creation = 0 s
[2025-06-03 13:50:03] 2025-06-03 17:49:43,124 | INFO     | ..............................
[2025-06-03 13:50:03] 2025-06-03 17:49:43,607 | INFO     | 
[2025-06-03 13:50:03] 2025-06-03 17:49:43,608 | INFO     | job summary report
[2025-06-03 13:50:03] 2025-06-03 17:49:43,608 | INFO     | --------------------------------------------------
[2025-06-03 13:50:03] 2025-06-03 17:49:43,608 | INFO     | PanDA job id: 6677677354
[2025-06-03 13:50:03] 2025-06-03 17:49:43,608 | INFO     | task id: 45006595
[2025-06-03 13:50:03] 2025-06-03 17:49:43,608 | INFO     | errors: (none)
[2025-06-03 13:50:03] 2025-06-03 17:49:43,608 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:50:03] 2025-06-03 17:49:43,608 | INFO     | pilot state: finished 
[2025-06-03 13:50:03] 2025-06-03 17:49:43,608 | INFO     | transexitcode: 0
[2025-06-03 13:50:03] 2025-06-03 17:49:43,608 | INFO     | exeerrorcode: 0
[2025-06-03 13:50:03] 2025-06-03 17:49:43,608 | INFO     | exeerrordiag: 
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | exitcode: 0
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | exitmsg: OK
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | cpuconsumptiontime: 27860 s
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | nevents: 400
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | neventsw: 0
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | pid: 3999288
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | pgrp: 3999288
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | corecount: 8
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | event service: False
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | sizes: {0: 2405184, 4: 2405390, 11: 2405418, 4132: 2431268, 4133: 2440209, 4134: 2440265, 4140: 2440563}
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | --------------------------------------------------
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | 
[2025-06-03 13:50:03] 2025-06-03 17:49:43,609 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-06-03 13:50:03] 2025-06-03 17:49:43,628 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,629 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,629 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,629 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,629 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,629 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,629 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,629 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,629 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,629 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,629 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,630 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,630 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,630 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,630 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,630 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,630 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,630 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:50:03] 2025-06-03 17:49:43,630 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,630 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:50:03] 2025-06-03 17:49:43,630 | INFO     | job 6677677354 has completed (purged errors)
[2025-06-03 13:50:03] 2025-06-03 17:49:43,630 | INFO     | overall cleanup function is called
[2025-06-03 13:50:03] 2025-06-03 17:49:43,967 | INFO     | PID=3989688 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 13:50:03] 2025-06-03 17:49:43,968 | INFO     | .. there are 8 such processes running
[2025-06-03 13:50:03] 2025-06-03 17:49:44,639 | INFO     | --- collectZombieJob: --- 10, [3999288]
[2025-06-03 13:50:03] 2025-06-03 17:49:44,640 | INFO     | zombie collector waiting for pid 3999288
[2025-06-03 13:50:03] 2025-06-03 17:49:44,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:50:03] 2025-06-03 17:49:44,640 | INFO     | collected zombie processes
[2025-06-03 13:50:03] 2025-06-03 17:49:44,640 | INFO     | will attempt to kill all subprocesses of pid=3999288
[2025-06-03 13:50:03] 2025-06-03 17:49:44,875 | INFO     | process IDs to be killed: [3999288] (in reverse order)
[2025-06-03 13:50:03] 2025-06-03 17:49:44,950 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:50:03] 2025-06-03 17:49:44,950 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:50:03] 2025-06-03 17:49:44,958 | INFO     | did not find any defunct processes belonging to 3999288
[2025-06-03 13:50:03] 2025-06-03 17:49:44,966 | INFO     | did not find any defunct processes belonging to 3999288
[2025-06-03 13:50:03] 2025-06-03 17:49:44,966 | INFO     | ready for new job
[2025-06-03 13:50:03] 2025-06-03 17:49:44,966 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:50:03] 2025-06-03 17:49:44,968 | INFO     | **************************************
[2025-06-03 13:50:03] 2025-06-03 17:49:44,969 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:50:03] 2025-06-03 17:49:44,969 | INFO     | **************************************
[2025-06-03 13:50:03] 2025-06-03 17:49:44,969 | INFO     | 
[2025-06-03 13:50:03] 2025-06-03 17:49:44,984 | INFO     | architecture information:
[2025-06-03 13:50:03] 2025-06-03 17:49:44,984 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:50:03] 2025-06-03 17:49:44,997 | INFO     | cat /etc/os-release:
[2025-06-03 13:50:03] NAME="CentOS Linux"
[2025-06-03 13:50:03] VERSION="7 (Core)"
[2025-06-03 13:50:03] ID="centos"
[2025-06-03 13:50:03] ID_LIKE="rhel fedora"
[2025-06-03 13:50:03] VERSION_ID="7"
[2025-06-03 13:50:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:50:03] ANSI_COLOR="0;31"
[2025-06-03 13:50:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:50:03] HOME_URL="https://www.centos.org/"
[2025-06-03 13:50:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:50:03] 
[2025-06-03 13:50:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:50:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:50:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:50:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:50:03] 
[2025-06-03 13:50:03] 2025-06-03 17:49:44,997 | INFO     | **************************************
[2025-06-03 13:50:03] 2025-06-03 17:49:45,500 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-06-03 13:50:03] 2025-06-03 17:49:45,514 | INFO     | sufficient remaining disk space (73422340096 B)
[2025-06-03 13:50:03] 2025-06-03 17:49:45,514 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:50:03] 2025-06-03 17:49:45,515 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:50:03] 2025-06-03 17:49:45,515 | INFO     | update_server=False
[2025-06-03 13:50:03] 2025-06-03 17:49:45,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:50:03] 2025-06-03 17:49:45,803 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 13:50:03] 2025-06-03 17:49:45,803 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 13:50:03] 2025-06-03 17:49:45,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:50:03] 2025-06-03 17:49:45,803 | INFO     | will abort loop
[2025-06-03 13:50:03] 2025-06-03 17:49:45,906 | INFO     | all payload control threads have been joined
[2025-06-03 13:50:03] 2025-06-03 17:49:45,974 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:50:03] 2025-06-03 17:49:45,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:50:03] 2025-06-03 17:49:45,974 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:50:03] 2025-06-03 17:49:46,271 | INFO     | all data control threads have been joined
[2025-06-03 13:50:03] 2025-06-03 17:49:46,520 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:46,730 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:46,783 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:50:03] 2025-06-03 17:49:46,809 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:46,911 | INFO     | [payload] control thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:47,013 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:47,104 | INFO     | all job control threads have been joined
[2025-06-03 13:50:03] 2025-06-03 17:49:47,276 | INFO     | [data] control thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:47,426 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:47,500 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:50:03] 2025-06-03 17:49:47,616 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:47,789 | INFO     | [job] validate thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:47,963 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:48,047 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:48,110 | INFO     | [job] control thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:48,220 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:50:03] 2025-06-03 17:49:48,790 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:49,226 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:51,506 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:55,851 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:50:03] 2025-06-03 17:49:56,855 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:50:03] 2025-06-03 17:49:58,429 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139793007331136)>', '<ExcThread(monitor, started 139792377435904)>']
[2025-06-03 13:50:03] 2025-06-03 17:49:59,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:50:03] 2025-06-03 17:49:59,039 | INFO     | [monitor] control thread has ended
[2025-06-03 13:50:03] 2025-06-03 17:50:03,454 | INFO     | all workflow threads have been joined
[2025-06-03 13:50:03] 2025-06-03 17:50:03,454 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:50:03] 2025-06-03 17:50:03,454 | INFO     | traces error code: 0
[2025-06-03 13:50:03] 2025-06-03 17:50:03,455 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:50:03] 2025-06-03 17:50:03,599 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:50:03] 2025-06-03 17:50:03,601 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:50:03] 2025-06-03 17:50:03,603 [wrapper] pilotpid: 3989688
[2025-06-03 13:50:03] 2025-06-03 17:50:03,605 [wrapper] Pilot exit status: 0
[2025-06-03 13:50:03] 2025-06-03 17:50:03,614 [wrapper] pandaids: 6677677354
[2025-06-03 13:50:03] 2025-06-03 17:50:03,664 [wrapper] cleanup supervisor_pilot 4189717 3989689
[2025-06-03 13:50:03] 2025-06-03 17:50:03,667 [wrapper] Test setup, not cleaning
[2025-06-03 13:50:03] 2025-06-03 17:50:03,670 [wrapper] apfmon messages muted
[2025-06-03 13:50:03] 2025-06-03 17:50:03,672 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:50:03] 2025-06-03 17:50:03,674 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:50:03]  *** Error codes and diagnostics ***
[2025-06-03 13:50:03]     "exeErrorCode": 0,
[2025-06-03 13:50:03]     "exeErrorDiag": "",
[2025-06-03 13:50:03]     "pilotErrorCode": 0,
[2025-06-03 13:50:03]     "pilotErrorDiag": "",
[2025-06-03 13:50:03]  *** Listing of results directory ***
[2025-06-03 13:50:03] total 399348
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 11:35 pilot3.tar.gz
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 11:39 queuedata.json
[2025-06-03 13:50:03] -rwx------. 1 boincer umatlas     37140 Jun  3 11:40 runpilot2-wrapper.sh
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas       100 Jun  3 12:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:50:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 12:40 run_atlas
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas       105 Jun  3 12:40 job.xml
[2025-06-03 13:50:03] -rw-r--r--. 2 boincer umatlas 216838213 Jun  3 12:40 EVNT.45006593._001493.pool.root.1
[2025-06-03 13:50:03] -rw-r--r--. 2 boincer umatlas    508877 Jun  3 12:40 input.tar.gz
[2025-06-03 13:50:03] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 12:40 start_atlas.sh
[2025-06-03 13:50:03] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 12:40 shared
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas         0 Jun  3 12:40 boinc_lockfile
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 12:40 pandaJob.out
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas    983734 Jun  3 12:40 agis_schedconf.cvmfs.json
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas   1603667 Jun  3 12:40 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:50:03] drwx------. 4 boincer umatlas      4096 Jun  3 12:40 pilot3
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas      6842 Jun  3 13:45 init_data.xml
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas 186825696 Jun  3 13:49 HITS.45006595._037164.pool.root.1
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas       529 Jun  3 13:49 boinc_task_state.xml
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas      1031 Jun  3 13:49 memory_monitor_summary.json
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas        95 Jun  3 13:49 pilot_heartbeat.json
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas    297703 Jun  3 13:49 log.45006595._037164.job.log.tgz.1
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas      7709 Jun  3 13:49 heartbeat.json
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas        27 Jun  3 13:50 wrapper_checkpoint.txt
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 13:50 boinc_mmap_file
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas      4611 Jun  3 13:50 pilotlog.txt
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas    418063 Jun  3 13:50 log.45006595._037164.job.log.1
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas       357 Jun  3 13:50 output.list
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas       620 Jun  3 13:50 runtime_log
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas    737280 Jun  3 13:50 result.tar.gz
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas      8664 Jun  3 13:50 runtime_log.err
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas       651 Jun  3 13:50 bOuKDmEwig7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGrkKDmSRToPm.diag
[2025-06-03 13:50:03] -rw-r--r--. 1 boincer umatlas     21516 Jun  3 13:50 stderr.txt
[2025-06-03 13:50:03] HITS file was successfully produced:
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas 186825696 Jun  3 13:49 shared/HITS.pool.root.1
[2025-06-03 13:50:03]  *** Contents of shared directory: ***
[2025-06-03 13:50:03] total 395448
[2025-06-03 13:50:03] -rw-r--r--. 2 boincer umatlas 216838213 Jun  3 12:40 ATLAS.root_0
[2025-06-03 13:50:03] -rw-r--r--. 2 boincer umatlas    508877 Jun  3 12:40 input.tar.gz
[2025-06-03 13:50:03] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 12:40 start_atlas.sh
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas 186825696 Jun  3 13:49 HITS.pool.root.1
[2025-06-03 13:50:03] -rw-------. 1 boincer umatlas    737280 Jun  3 13:50 result.tar.gz
13:50:05 (3985987): run_atlas exited; CPU time 27958.001758
13:50:05 (3985987): called boinc_finish(0)

</stderr_txt>
]]>

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