Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:43:10 (949774): wrapper (7.7.26015): starting
12:43:10 (949774): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 12:43:10] Arguments: --nthreads 8
[2025-06-03 12:43:10] Threads: 8
[2025-06-03 12:43:10] Checking for CVMFS
[2025-06-03 12:43:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 12:43:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 12:43:10] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 12:43:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 12:43:11] 2.12.6.0 5760 153 83768 146749 3 186 29734137 40960001 8945 16776704 0 2192954 99.992 143224 54292 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 12:43:11] CVMFS is ok
[2025-06-03 12:43:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 12:43:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 12:43:11] Further information can be found at the LHC@home message board.
[2025-06-03 12:43:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:43:11] Checking for apptainer binary...
[2025-06-03 12:43:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 12:43:11] Running /usr/bin/apptainer --version
[2025-06-03 12:43:11] apptainer version 1.4.1-1.el9
[2025-06-03 12:43:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:43:11] c7-3-35.aglt2.org
[2025-06-03 12:43:11] apptainer works
[2025-06-03 12:43:11] Set ATHENA_PROC_NUMBER=8
[2025-06-03 12:43:11] Set ATHENA_CORE_NUMBER=8
[2025-06-03 12:43:11] Starting ATLAS job with PandaID=6677619380
[2025-06-03 12:43:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:49:06]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:49:06]  guid=90806141-169f-4678-95ec-a75de19db53a
[2025-06-03 13:49:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 13:49:06]  is_altstaged=None
[2025-06-03 13:49:06]  is_tar=False
[2025-06-03 13:49:06]  lfn=log.45006595._032600.job.log.tgz.1
[2025-06-03 13:49:06]  mtime=0
[2025-06-03 13:49:06]  protocol_id=None
[2025-06-03 13:49:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 13:49:06]  replicas=None
[2025-06-03 13:49:06]  scope=mc23_13p6TeV
[2025-06-03 13:49:06]  status=None
[2025-06-03 13:49:06]  status_code=0
[2025-06-03 13:49:06]  storage_token=
[2025-06-03 13:49:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677619380/log.45006595._032600.job.log.tgz.1
[2025-06-03 13:49:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/68/log.45006595._032600.job.log.tgz.1
[2025-06-03 13:49:06]  workdir=None
[2025-06-03 13:49:06] ]
[2025-06-03 13:49:06] 2025-06-03 17:48:41,726 | INFO     | transferring file log.45006595._032600.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677619380/log.45006595._032600.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 13:49:06] 2025-06-03 17:48:41,726 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677619380/log.45006595._032600.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._032600.job
[2025-06-03 13:49:06] 2025-06-03 17:48:41,746 | INFO     | adding to output.list: log.45006595._032600.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8f/68/log.45006595._032600.job.log.tg
[2025-06-03 13:49:06] 2025-06-03 17:48:41,746 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 13:49:06] 2025-06-03 17:48:41,746 | INFO     | summary of transferred files:
[2025-06-03 13:49:06] 2025-06-03 17:48:41,746 | INFO     |  -- lfn=log.45006595._032600.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 13:49:06] 2025-06-03 17:48:41,747 | INFO     | stage-out finished correctly
[2025-06-03 13:49:06] 2025-06-03 17:48:41,825 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 13:49:06] 2025-06-03 17:48:41,900 | INFO     | job 6677619380 has state=finished
[2025-06-03 13:49:06] 2025-06-03 17:48:41,900 | INFO     | preparing for final server update for job 6677619380 in state='finished'
[2025-06-03 13:49:06] 2025-06-03 17:48:41,900 | INFO     | this job has now completed (state=finished)
[2025-06-03 13:49:06] 2025-06-03 17:48:41,900 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 13:49:06] 2025-06-03 17:48:41,901 | INFO     | log transfer has been attempted: DONE
[2025-06-03 13:49:06] 2025-06-03 17:48:41,901 | INFO     | job 6677619380 has finished - writing final server update
[2025-06-03 13:49:06] 2025-06-03 17:48:41,901 | INFO     | total number of processed events: 400 (read)
[2025-06-03 13:49:06] 2025-06-03 17:48:41,919 | INFO     | executing command: lscpu
[2025-06-03 13:49:06] 2025-06-03 17:48:42,001 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 13:49:06] 2025-06-03 17:48:45,947 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 13:49:06] 2025-06-03 17:48:45,948 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677619380/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:49:06] 2025-06-03 17:48:45,949 | INFO     | extracted standard info from prmon json
[2025-06-03 13:49:06] 2025-06-03 17:48:45,950 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:49:06] 2025-06-03 17:48:45,950 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:49:06] 2025-06-03 17:48:45,950 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:49:06] 2025-06-03 17:48:45,950 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:49:06] 2025-06-03 17:48:45,952 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:49:06] 2025-06-03 17:48:45,953 | INFO     | sum of square deviations: 57407588.0
[2025-06-03 13:49:06] 2025-06-03 17:48:45,953 | INFO     | sum of deviations: 5347292574.0
[2025-06-03 13:49:06] 2025-06-03 17:48:45,953 | INFO     | mean x: 1748971041.0
[2025-06-03 13:49:06] 2025-06-03 17:48:45,953 | INFO     | mean y: 2116722.8421052634
[2025-06-03 13:49:06] 2025-06-03 17:48:45,953 | INFO     | -- intersect: -162907703833.98654
[2025-06-03 13:49:06] 2025-06-03 17:48:45,953 | INFO     | intersect: -162907703833.98654
[2025-06-03 13:49:06] 2025-06-03 17:48:45,954 | INFO     | chi2: 0.7683788580354939
[2025-06-03 13:49:06] 2025-06-03 17:48:45,954 | INFO     | -- intersect: -162907703833.98654
[2025-06-03 13:49:06] 2025-06-03 17:48:45,954 | INFO     | current memory leak: 93.15 B/s (using 57 data points, chi2=0.77)
[2025-06-03 13:49:06] 2025-06-03 17:48:45,954 | INFO     | ..............................
[2025-06-03 13:49:06] 2025-06-03 17:48:45,955 | INFO     | . Timing measurements:
[2025-06-03 13:49:06] 2025-06-03 17:48:45,955 | INFO     | . get job = 0 s
[2025-06-03 13:49:06] 2025-06-03 17:48:45,955 | INFO     | . initial setup = 2 s
[2025-06-03 13:49:06] 2025-06-03 17:48:45,955 | INFO     | . payload setup = 5 s
[2025-06-03 13:49:06] 2025-06-03 17:48:45,955 | INFO     | . stage-in = 0 s
[2025-06-03 13:49:06] 2025-06-03 17:48:45,955 | INFO     | . payload execution = 3893 s
[2025-06-03 13:49:06] 2025-06-03 17:48:45,955 | INFO     | . stage-out = 0 s
[2025-06-03 13:49:06] 2025-06-03 17:48:45,955 | INFO     | . log creation = 0 s
[2025-06-03 13:49:06] 2025-06-03 17:48:45,955 | INFO     | ..............................
[2025-06-03 13:49:06] 2025-06-03 17:48:46,279 | INFO     | 
[2025-06-03 13:49:06] 2025-06-03 17:48:46,279 | INFO     | job summary report
[2025-06-03 13:49:06] 2025-06-03 17:48:46,280 | INFO     | --------------------------------------------------
[2025-06-03 13:49:06] 2025-06-03 17:48:46,280 | INFO     | PanDA job id: 6677619380
[2025-06-03 13:49:06] 2025-06-03 17:48:46,280 | INFO     | task id: 45006595
[2025-06-03 13:49:06] 2025-06-03 17:48:46,280 | INFO     | errors: (none)
[2025-06-03 13:49:06] 2025-06-03 17:48:46,280 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:49:06] 2025-06-03 17:48:46,280 | INFO     | pilot state: finished 
[2025-06-03 13:49:06] 2025-06-03 17:48:46,280 | INFO     | transexitcode: 0
[2025-06-03 13:49:06] 2025-06-03 17:48:46,280 | INFO     | exeerrorcode: 0
[2025-06-03 13:49:06] 2025-06-03 17:48:46,281 | INFO     | exeerrordiag: 
[2025-06-03 13:49:06] 2025-06-03 17:48:46,281 | INFO     | exitcode: 0
[2025-06-03 13:49:06] 2025-06-03 17:48:46,281 | INFO     | exitmsg: OK
[2025-06-03 13:49:06] 2025-06-03 17:48:46,281 | INFO     | cpuconsumptiontime: 26362 s
[2025-06-03 13:49:06] 2025-06-03 17:48:46,281 | INFO     | nevents: 400
[2025-06-03 13:49:06] 2025-06-03 17:48:46,281 | INFO     | neventsw: 0
[2025-06-03 13:49:06] 2025-06-03 17:48:46,281 | INFO     | pid: 969463
[2025-06-03 13:49:06] 2025-06-03 17:48:46,281 | INFO     | pgrp: 969463
[2025-06-03 13:49:06] 2025-06-03 17:48:46,282 | INFO     | corecount: 8
[2025-06-03 13:49:06] 2025-06-03 17:48:46,282 | INFO     | event service: False
[2025-06-03 13:49:06] 2025-06-03 17:48:46,282 | INFO     | sizes: {0: 2405013, 1: 2405212, 5: 2405418, 11: 2405474, 3903: 2431219, 3905: 2440344, 3909: 2440458}
[2025-06-03 13:49:06] 2025-06-03 17:48:46,282 | INFO     | --------------------------------------------------
[2025-06-03 13:49:06] 2025-06-03 17:48:46,282 | INFO     | 
[2025-06-03 13:49:06] 2025-06-03 17:48:46,282 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 13:49:06] 2025-06-03 17:48:46,305 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,306 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,306 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,306 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,306 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,306 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,306 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,307 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,307 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,307 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,307 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,307 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,307 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,307 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,308 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,308 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,308 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,308 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:49:06] 2025-06-03 17:48:46,308 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,308 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:49:06] 2025-06-03 17:48:46,308 | INFO     | job 6677619380 has completed (purged errors)
[2025-06-03 13:49:06] 2025-06-03 17:48:46,309 | INFO     | overall cleanup function is called
[2025-06-03 13:49:06] 2025-06-03 17:48:46,383 | WARNING  | process 969463 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 13:49:06] 2025-06-03 17:48:46,714 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:49:06] 2025-06-03 17:48:47,108 | INFO     | number of running child processes to parent process 969463: 1
[2025-06-03 13:49:06] 2025-06-03 17:48:47,108 | INFO     | maximum number of monitored processes: 6
[2025-06-03 13:49:06] 2025-06-03 17:48:47,108 | INFO     | aborting job monitoring since job object (job id=6677619380) has expired
[2025-06-03 13:49:06] 2025-06-03 17:48:47,319 | INFO     | --- collectZombieJob: --- 10, [969463]
[2025-06-03 13:49:06] 2025-06-03 17:48:47,319 | INFO     | zombie collector waiting for pid 969463
[2025-06-03 13:49:06] 2025-06-03 17:48:47,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:49:06] 2025-06-03 17:48:47,319 | INFO     | collected zombie processes
[2025-06-03 13:49:06] 2025-06-03 17:48:47,320 | INFO     | will attempt to kill all subprocesses of pid=969463
[2025-06-03 13:49:06] 2025-06-03 17:48:47,734 | INFO     | process IDs to be killed: [969463] (in reverse order)
[2025-06-03 13:49:06] 2025-06-03 17:48:47,868 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:49:06] 2025-06-03 17:48:47,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:49:06] 2025-06-03 17:48:47,885 | INFO     | did not find any defunct processes belonging to 969463
[2025-06-03 13:49:06] 2025-06-03 17:48:47,901 | INFO     | did not find any defunct processes belonging to 969463
[2025-06-03 13:49:06] 2025-06-03 17:48:47,901 | INFO     | ready for new job
[2025-06-03 13:49:06] 2025-06-03 17:48:47,902 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:49:06] 2025-06-03 17:48:47,904 | INFO     | **************************************
[2025-06-03 13:49:06] 2025-06-03 17:48:47,904 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:49:06] 2025-06-03 17:48:47,904 | INFO     | **************************************
[2025-06-03 13:49:06] 2025-06-03 17:48:47,904 | INFO     | 
[2025-06-03 13:49:06] 2025-06-03 17:48:47,921 | INFO     | architecture information:
[2025-06-03 13:49:06] 2025-06-03 17:48:47,921 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:49:06] 2025-06-03 17:48:47,941 | INFO     | cat /etc/os-release:
[2025-06-03 13:49:06] NAME="CentOS Linux"
[2025-06-03 13:49:06] VERSION="7 (Core)"
[2025-06-03 13:49:06] ID="centos"
[2025-06-03 13:49:06] ID_LIKE="rhel fedora"
[2025-06-03 13:49:06] VERSION_ID="7"
[2025-06-03 13:49:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:49:06] ANSI_COLOR="0;31"
[2025-06-03 13:49:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:49:06] HOME_URL="https://www.centos.org/"
[2025-06-03 13:49:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:49:06] 
[2025-06-03 13:49:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:49:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:49:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:49:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:49:06] 
[2025-06-03 13:49:06] 2025-06-03 17:48:47,941 | INFO     | **************************************
[2025-06-03 13:49:06] 2025-06-03 17:48:48,444 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 13:49:06] 2025-06-03 17:48:48,466 | INFO     | sufficient remaining disk space (122963361792 B)
[2025-06-03 13:49:06] 2025-06-03 17:48:48,466 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:49:06] 2025-06-03 17:48:48,466 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:49:06] 2025-06-03 17:48:48,466 | INFO     | update_server=False
[2025-06-03 13:49:06] 2025-06-03 17:48:48,467 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:49:06] 2025-06-03 17:48:48,467 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 13:49:06] 2025-06-03 17:48:48,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:49:06] 2025-06-03 17:48:48,467 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:49:06] 2025-06-03 17:48:48,468 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:49:06] 2025-06-03 17:48:48,468 | INFO     | aborting loop
[2025-06-03 13:49:06] 2025-06-03 17:48:48,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:49:06] 2025-06-03 17:48:48,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:49:06] 2025-06-03 17:48:48,766 | INFO     | all job control threads have been joined
[2025-06-03 13:49:06] 2025-06-03 17:48:48,900 | INFO     | all data control threads have been joined
[2025-06-03 13:49:06] 2025-06-03 17:48:49,009 | INFO     | all payload control threads have been joined
[2025-06-03 13:49:06] 2025-06-03 17:48:49,472 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:49,474 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:49,771 | INFO     | [job] control thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:49,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:49:06] 2025-06-03 17:48:49,905 | INFO     | [data] control thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:49,932 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:50,014 | INFO     | [payload] control thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:50,359 | INFO     | [job] validate thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:50,590 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:50,590 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:50,613 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:50,625 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:50,684 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:51,042 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:49:06] 2025-06-03 17:48:51,837 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:52,046 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:52,474 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:48:59,456 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:49:06] 2025-06-03 17:49:00,461 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:49:06] 2025-06-03 17:49:00,851 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140553332340544)>', '<ExcThread(monitor, started 140552838297344)>']
[2025-06-03 13:49:06] 2025-06-03 17:49:01,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:49:06] 2025-06-03 17:49:01,531 | INFO     | [monitor] control thread has ended
[2025-06-03 13:49:06] 2025-06-03 17:49:05,876 | INFO     | all workflow threads have been joined
[2025-06-03 13:49:06] 2025-06-03 17:49:05,876 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:49:06] 2025-06-03 17:49:05,876 | INFO     | traces error code: 0
[2025-06-03 13:49:06] 2025-06-03 17:49:05,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:49:06] 2025-06-03 17:49:05,968 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:49:06] 2025-06-03 17:49:05,971 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:49:06] 2025-06-03 17:49:05,974 [wrapper] pilotpid: 956523
[2025-06-03 13:49:06] 2025-06-03 17:49:05,977 [wrapper] Pilot exit status: 0
[2025-06-03 13:49:06] 2025-06-03 17:49:05,987 [wrapper] pandaids: 6677619380
[2025-06-03 13:49:06] 2025-06-03 17:49:06,071 [wrapper] cleanup supervisor_pilot 1267123 956524
[2025-06-03 13:49:06] 2025-06-03 17:49:06,075 [wrapper] Test setup, not cleaning
[2025-06-03 13:49:06] 2025-06-03 17:49:06,078 [wrapper] apfmon messages muted
[2025-06-03 13:49:06] 2025-06-03 17:49:06,082 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:49:06] 2025-06-03 17:49:06,086 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:49:06]  *** Error codes and diagnostics ***
[2025-06-03 13:49:06]     "exeErrorCode": 0,
[2025-06-03 13:49:06]     "exeErrorDiag": "",
[2025-06-03 13:49:06]     "pilotErrorCode": 0,
[2025-06-03 13:49:06]     "pilotErrorDiag": "",
[2025-06-03 13:49:06]  *** Listing of results directory ***
[2025-06-03 13:49:06] total 393132
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 08:32 queuedata.json
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 08:33 pilot3.tar.gz
[2025-06-03 13:49:06] -rwx------. 1 boincer umatlas     37140 Jun  3 08:34 runpilot2-wrapper.sh
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas       100 Jun  3 12:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:49:06] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 12:43 run_atlas
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas       105 Jun  3 12:43 job.xml
[2025-06-03 13:49:06] -rw-r--r--. 2 boincer umatlas 214069213 Jun  3 12:43 EVNT.45006593._001312.pool.root.1
[2025-06-03 13:49:06] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 12:43 start_atlas.sh
[2025-06-03 13:49:06] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 12:43 shared
[2025-06-03 13:49:06] -rw-r--r--. 2 boincer umatlas    508884 Jun  3 12:43 input.tar.gz
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas         0 Jun  3 12:43 boinc_lockfile
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 12:43 pandaJob.out
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas    983734 Jun  3 12:43 agis_schedconf.cvmfs.json
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas   1603667 Jun  3 12:43 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:49:06] drwx------. 4 boincer umatlas      4096 Jun  3 12:43 pilot3
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas      6936 Jun  3 13:45 init_data.xml
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas 183303450 Jun  3 13:48 HITS.45006595._032600.pool.root.1
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas       529 Jun  3 13:48 boinc_task_state.xml
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas        95 Jun  3 13:48 pilot_heartbeat.json
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas      1027 Jun  3 13:48 memory_monitor_summary.json
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas    291752 Jun  3 13:48 log.45006595._032600.job.log.tgz.1
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas      7683 Jun  3 13:48 heartbeat.json
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas        27 Jun  3 13:49 wrapper_checkpoint.txt
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas      4549 Jun  3 13:49 pilotlog.txt
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 13:49 boinc_mmap_file
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas    390571 Jun  3 13:49 log.45006595._032600.job.log.1
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas       357 Jun  3 13:49 output.list
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas       620 Jun  3 13:49 runtime_log
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas    696320 Jun  3 13:49 result.tar.gz
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas       650 Jun  3 13:49 xMtMDmK1fg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZ7jKDmj84K7n.diag
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas      8654 Jun  3 13:49 runtime_log.err
[2025-06-03 13:49:06] -rw-r--r--. 1 boincer umatlas     21259 Jun  3 13:49 stderr.txt
[2025-06-03 13:49:06] HITS file was successfully produced:
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas 183303450 Jun  3 13:48 shared/HITS.pool.root.1
[2025-06-03 13:49:06]  *** Contents of shared directory: ***
[2025-06-03 13:49:06] total 389264
[2025-06-03 13:49:06] -rw-r--r--. 2 boincer umatlas 214069213 Jun  3 12:43 ATLAS.root_0
[2025-06-03 13:49:06] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 12:43 start_atlas.sh
[2025-06-03 13:49:06] -rw-r--r--. 2 boincer umatlas    508884 Jun  3 12:43 input.tar.gz
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas 183303450 Jun  3 13:48 HITS.pool.root.1
[2025-06-03 13:49:06] -rw-------. 1 boincer umatlas    696320 Jun  3 13:49 result.tar.gz
13:49:07 (949774): run_atlas exited; CPU time 26455.550490
13:49:07 (949774): called boinc_finish(0)

</stderr_txt>
]]>

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