Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:52:25 (1433): wrapper (7.7.26015): starting
03:52:25 (1433): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 03:52:25] Arguments: --nthreads 8
[2025-06-04 03:52:25] Threads: 8
[2025-06-04 03:52:25] Checking for CVMFS
[2025-06-04 03:52:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 03:52:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 03:52:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 03:52:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 03:52:26] 2.11.2.0 361 32596 93000 146763 1 208 18590369 25165825 4183 130560 0 16370623 99.787 19862496 2354 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 03:52:26] CVMFS is ok
[2025-06-04 03:52:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 03:52:26] Checking for apptainer binary...
[2025-06-04 03:52:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 03:52:26] Running /usr/bin/apptainer --version
[2025-06-04 03:52:26] apptainer version 1.3.2-1.el7
[2025-06-04 03:52:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 03:52:28] cg-vwn321.simple-grid.lan
[2025-06-04 03:52:28] apptainer works
[2025-06-04 03:52:28] Set ATHENA_PROC_NUMBER=8
[2025-06-04 03:52:28] Set ATHENA_CORE_NUMBER=8
[2025-06-04 03:52:28] Starting ATLAS job with PandaID=6677636322
[2025-06-04 03:52:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:30:12]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:30:12] 2025-06-04 05:26:54,042 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:30:12] 2025-06-04 05:26:54,043 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:30:12] 2025-06-04 05:26:54,043 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:30:12] 2025-06-04 05:26:54,043 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:30:12] 2025-06-04 05:26:54,049 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:30:12] 2025-06-04 05:26:54,049 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,051 | INFO     | sum of deviations: -36722119102.500015
[2025-06-04 12:30:12] 2025-06-04 05:26:54,051 | INFO     | mean x: 1749008367.5
[2025-06-04 12:30:12] 2025-06-04 05:26:54,052 | INFO     | mean y: 2523231.360576923
[2025-06-04 12:30:12] 2025-06-04 05:26:54,052 | INFO     | -- intersect: 23020186456.26033
[2025-06-04 12:30:12] 2025-06-04 05:26:54,053 | INFO     | intersect: 23020186456.26033
[2025-06-04 12:30:12] 2025-06-04 05:26:54,053 | INFO     | chi2: 2.597419494578962
[2025-06-04 12:30:12] 2025-06-04 05:26:54,053 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,055 | INFO     | sum of deviations: -21734101444.999996
[2025-06-04 12:30:12] 2025-06-04 05:26:54,055 | INFO     | mean x: 1749008215.0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,055 | INFO     | mean y: 2534659.7536945813
[2025-06-04 12:30:12] 2025-06-04 05:26:54,056 | INFO     | -- intersect: 14657255178.879929
[2025-06-04 12:30:12] 2025-06-04 05:26:54,056 | INFO     | intersect: 14657255178.879929
[2025-06-04 12:30:12] 2025-06-04 05:26:54,056 | INFO     | chi2: 1.8298246812047483
[2025-06-04 12:30:12] 2025-06-04 05:26:54,056 | INFO     | current chi2=1.8298246812047483 (change=29.552208065591646 %)
[2025-06-04 12:30:12] 2025-06-04 05:26:54,057 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 12:30:12] 2025-06-04 05:26:54,058 | INFO     | sum of deviations: -20703614811.499992
[2025-06-04 12:30:12] 2025-06-04 05:26:54,059 | INFO     | mean x: 1749008062.5
[2025-06-04 12:30:12] 2025-06-04 05:26:54,059 | INFO     | mean y: 2535500.5303030303
[2025-06-04 12:30:12] 2025-06-04 05:26:54,059 | INFO     | -- intersect: 15046942491.757782
[2025-06-04 12:30:12] 2025-06-04 05:26:54,059 | INFO     | intersect: 15046942491.757782
[2025-06-04 12:30:12] 2025-06-04 05:26:54,059 | INFO     | chi2: 1.8284106026037434
[2025-06-04 12:30:12] 2025-06-04 05:26:54,059 | INFO     | current chi2=1.8284106026037434 (change=0.07727945827432053 %)
[2025-06-04 12:30:12] 2025-06-04 05:26:54,060 | INFO     | right removable region: 197
[2025-06-04 12:30:12] 2025-06-04 05:26:54,060 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,062 | INFO     | sum of deviations: -70713848010.0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,062 | INFO     | mean x: 1749008520.0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,062 | INFO     | mean y: 2549359.2463054187
[2025-06-04 12:30:12] 2025-06-04 05:26:54,062 | INFO     | -- intersect: 47683005013.42635
[2025-06-04 12:30:12] 2025-06-04 05:26:54,062 | INFO     | intersect: 47683005013.42635
[2025-06-04 12:30:12] 2025-06-04 05:26:54,063 | INFO     | chi2: 1.0227225378646805
[2025-06-04 12:30:12] 2025-06-04 05:26:54,063 | INFO     | current chi2=1.0227225378646805 (change=60.62543843999052 %)
[2025-06-04 12:30:12] 2025-06-04 05:26:54,063 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 12:30:12] 2025-06-04 05:26:54,065 | INFO     | sum of deviations: -69712739220.5
[2025-06-04 12:30:12] 2025-06-04 05:26:54,065 | INFO     | mean x: 1749008672.5
[2025-06-04 12:30:12] 2025-06-04 05:26:54,065 | INFO     | mean y: 2548499.6616161615
[2025-06-04 12:30:12] 2025-06-04 05:26:54,065 | INFO     | -- intersect: 50659749990.31173
[2025-06-04 12:30:12] 2025-06-04 05:26:54,065 | INFO     | intersect: 50659749990.31173
[2025-06-04 12:30:12] 2025-06-04 05:26:54,066 | INFO     | chi2: 1.0011487016820806
[2025-06-04 12:30:12] 2025-06-04 05:26:54,066 | INFO     | current chi2=1.0011487016820806 (change=2.109451526084819 %)
[2025-06-04 12:30:12] 2025-06-04 05:26:54,066 | INFO     | left removable region: 20
[2025-06-04 12:30:12] 2025-06-04 05:26:54,066 | INFO     | sum of square deviations: 1719429448.0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,068 | INFO     | sum of deviations: -42771965543.0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,069 | INFO     | mean x: 1749008642.0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,069 | INFO     | mean y: 2553484.8587570623
[2025-06-04 12:30:12] 2025-06-04 05:26:54,069 | INFO     | -- intersect: 43510321399.99407
[2025-06-04 12:30:12] 2025-06-04 05:26:54,069 | INFO     | intersect: 43510321399.99407
[2025-06-04 12:30:12] 2025-06-04 05:26:54,069 | INFO     | chi2: 0.1964087477939655
[2025-06-04 12:30:12] 2025-06-04 05:26:54,070 | INFO     | -- intersect: 43510321399.99407
[2025-06-04 12:30:12] 2025-06-04 05:26:54,070 | INFO     | current memory leak: -24.88 B/s (using 177 data points, chi2=0.20)
[2025-06-04 12:30:12] 2025-06-04 05:26:54,071 | INFO     | ..............................
[2025-06-04 12:30:12] 2025-06-04 05:26:54,071 | INFO     | . Timing measurements:
[2025-06-04 12:30:12] 2025-06-04 05:26:54,071 | INFO     | . get job = 0 s
[2025-06-04 12:30:12] 2025-06-04 05:26:54,071 | INFO     | . initial setup = 2 s
[2025-06-04 12:30:12] 2025-06-04 05:26:54,071 | INFO     | . payload setup = 30 s
[2025-06-04 12:30:12] 2025-06-04 05:26:54,071 | INFO     | . stage-in = 0 s
[2025-06-04 12:30:12] 2025-06-04 05:26:54,071 | INFO     | . payload execution = 12688 s
[2025-06-04 12:30:12] 2025-06-04 05:26:54,071 | INFO     | . stage-out = 3 s
[2025-06-04 12:30:12] 2025-06-04 05:26:54,072 | INFO     | . log creation = 1 s
[2025-06-04 12:30:12] 2025-06-04 05:26:54,072 | INFO     | ..............................
[2025-06-04 12:30:12] 2025-06-04 05:26:54,213 | INFO     | 
[2025-06-04 12:30:12] 2025-06-04 05:26:54,213 | INFO     | job summary report
[2025-06-04 12:30:12] 2025-06-04 05:26:54,213 | INFO     | --------------------------------------------------
[2025-06-04 12:30:12] 2025-06-04 05:26:54,213 | INFO     | PanDA job id: 6677636322
[2025-06-04 12:30:12] 2025-06-04 05:26:54,214 | INFO     | task id: 45006595
[2025-06-04 12:30:12] 2025-06-04 05:26:54,214 | INFO     | errors: (none)
[2025-06-04 12:30:12] 2025-06-04 05:26:54,214 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:30:12] 2025-06-04 05:26:54,214 | INFO     | pilot state: finished 
[2025-06-04 12:30:12] 2025-06-04 05:26:54,214 | INFO     | transexitcode: 0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,214 | INFO     | exeerrorcode: 0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,214 | INFO     | exeerrordiag: 
[2025-06-04 12:30:12] 2025-06-04 05:26:54,214 | INFO     | exitcode: 0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,214 | INFO     | exitmsg: OK
[2025-06-04 12:30:12] 2025-06-04 05:26:54,214 | INFO     | cpuconsumptiontime: 48290 s
[2025-06-04 12:30:12] 2025-06-04 05:26:54,214 | INFO     | nevents: 400
[2025-06-04 12:30:12] 2025-06-04 05:26:54,215 | INFO     | neventsw: 0
[2025-06-04 12:30:12] 2025-06-04 05:26:54,215 | INFO     | pid: 16446
[2025-06-04 12:30:12] 2025-06-04 05:26:54,215 | INFO     | pgrp: 16446
[2025-06-04 12:30:12] 2025-06-04 05:26:54,215 | INFO     | corecount: 8
[2025-06-04 12:30:12] 2025-06-04 05:26:54,215 | INFO     | event service: False
[2025-06-04 12:30:12] 2025-06-04 05:26:54,215 | INFO     | sizes: {0: 2405013, 1: 2405212, 9: 2405418, 12: 2405446, 12723: 2434565, 12727: 2443506, 12728: 2443690, 12822: 2443860}
[2025-06-04 12:30:12] 2025-06-04 05:26:54,215 | INFO     | --------------------------------------------------
[2025-06-04 12:30:12] 2025-06-04 05:26:54,215 | INFO     | 
[2025-06-04 12:30:12] 2025-06-04 05:26:54,215 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-04 12:30:12] 2025-06-04 05:26:54,502 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,503 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,503 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,503 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,503 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,503 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,503 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,503 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,504 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,504 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,504 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,504 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,504 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,504 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,505 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:30:12] 2025-06-04 05:26:54,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,505 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:30:12] 2025-06-04 05:26:54,505 | INFO     | job 6677636322 has completed (purged errors)
[2025-06-04 12:30:12] 2025-06-04 05:26:54,505 | INFO     | overall cleanup function is called
[2025-06-04 12:30:12] 2025-06-04 05:26:55,515 | INFO     | --- collectZombieJob: --- 10, [16446]
[2025-06-04 12:30:12] 2025-06-04 05:26:55,515 | INFO     | zombie collector waiting for pid 16446
[2025-06-04 12:30:12] 2025-06-04 05:26:55,515 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:30:12] 2025-06-04 05:26:55,515 | INFO     | collected zombie processes
[2025-06-04 12:30:12] 2025-06-04 05:26:55,515 | INFO     | will attempt to kill all subprocesses of pid=16446
[2025-06-04 12:30:12] 2025-06-04 05:26:55,657 | INFO     | process IDs to be killed: [16446] (in reverse order)
[2025-06-04 12:30:12] 2025-06-04 05:26:56,622 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:30:12] 2025-06-04 05:26:56,622 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:30:12] 2025-06-04 05:26:56,628 | INFO     | did not find any defunct processes belonging to 16446
[2025-06-04 12:30:12] 2025-06-04 05:26:56,632 | INFO     | did not find any defunct processes belonging to 16446
[2025-06-04 12:30:12] 2025-06-04 05:26:56,632 | INFO     | ready for new job
[2025-06-04 12:30:12] 2025-06-04 05:26:56,632 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:30:12] 2025-06-04 05:26:56,639 | INFO     | **************************************
[2025-06-04 12:30:12] 2025-06-04 05:26:56,639 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:30:12] 2025-06-04 05:26:56,639 | INFO     | **************************************
[2025-06-04 12:30:12] 2025-06-04 05:26:56,639 | INFO     | 
[2025-06-04 12:30:12] 2025-06-04 05:26:56,640 | INFO     | pilot is running in a VM
[2025-06-04 12:30:12] 2025-06-04 05:26:56,640 | INFO     | architecture information:
[2025-06-04 12:30:12] 2025-06-04 05:26:56,660 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:30:12] 2025-06-04 05:26:56,979 | INFO     | cat /etc/os-release:
[2025-06-04 12:30:12] NAME="CentOS Linux"
[2025-06-04 12:30:12] VERSION="7 (Core)"
[2025-06-04 12:30:12] ID="centos"
[2025-06-04 12:30:12] ID_LIKE="rhel fedora"
[2025-06-04 12:30:12] VERSION_ID="7"
[2025-06-04 12:30:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:30:12] ANSI_COLOR="0;31"
[2025-06-04 12:30:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:30:12] HOME_URL="https://www.centos.org/"
[2025-06-04 12:30:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:30:12] 
[2025-06-04 12:30:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:30:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:30:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:30:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:30:12] 
[2025-06-04 12:30:12] 2025-06-04 05:26:56,980 | INFO     | **************************************
[2025-06-04 12:30:12] 2025-06-04 05:26:57,483 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-04 12:30:12] 2025-06-04 05:26:57,778 | INFO     | sufficient remaining disk space (496974692352 B)
[2025-06-04 12:30:12] 2025-06-04 05:26:57,778 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:30:12] 2025-06-04 05:26:57,779 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:30:12] 2025-06-04 05:26:57,779 | INFO     | update_server=False
[2025-06-04 12:30:12] 2025-06-04 05:26:57,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:30:12] 2025-06-04 05:26:57,782 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:30:12] 2025-06-04 05:26:57,934 | INFO     | all data control threads have been joined
[2025-06-04 12:30:12] 2025-06-04 05:26:58,370 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:30:12] 2025-06-04 05:26:58,370 | INFO     | aborting loop
[2025-06-04 12:30:12] 2025-06-04 05:26:58,710 | INFO     | all job control threads have been joined
[2025-06-04 12:30:12] 2025-06-04 05:26:58,791 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:58,809 | INFO     | all payload control threads have been joined
[2025-06-04 12:30:12] 2025-06-04 05:26:58,861 | INFO     | PID=5086 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 12:30:12] 2025-06-04 05:26:58,862 | INFO     | .. there are 9 such processes running
[2025-06-04 12:30:12] 2025-06-04 05:26:58,862 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:30:12] 2025-06-04 05:26:58,862 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:30:12] 2025-06-04 05:26:58,862 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:30:12] 2025-06-04 05:26:58,876 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:58,940 | INFO     | [data] control thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:58,993 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:59,098 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:59,147 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:59,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:30:12] 2025-06-04 05:26:59,325 | INFO     | [job] validate thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:59,376 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:59,715 | INFO     | [job] control thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:59,794 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:59,815 | INFO     | [payload] control thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:59,834 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:59,857 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:26:59,915 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:27:00,234 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:27:00,752 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:30:12] 2025-06-04 05:27:04,761 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:30:12] 2025-06-04 05:27:06,817 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140344570341184)>', '<ExcThread(monitor, started 140344121337600)>']
[2025-06-04 12:30:12] 2025-06-04 05:27:06,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:30:12] 2025-06-04 05:27:06,912 | INFO     | [monitor] control thread has ended
[2025-06-04 12:30:12] 2025-06-04 05:27:11,843 | INFO     | all workflow threads have been joined
[2025-06-04 12:30:12] 2025-06-04 05:27:11,843 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:30:12] 2025-06-04 05:27:11,843 | INFO     | traces error code: 0
[2025-06-04 12:30:12] 2025-06-04 05:27:11,844 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:30:12] 2025-06-04 05:27:12,297 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:30:12] 2025-06-04 05:27:12,389 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:30:12] 2025-06-04 05:27:12,422 [wrapper] pilotpid: 5086
[2025-06-04 12:30:12] 2025-06-04 05:27:12,480 [wrapper] Pilot exit status: 0
[2025-06-04 12:30:12] 2025-06-04 05:27:12,752 [wrapper] pandaids: 6677636322
[2025-06-04 12:30:12] 2025-06-04 05:27:13,387 [wrapper] cleanup supervisor_pilot 15790 5087
[2025-06-04 12:30:12] 2025-06-04 05:27:13,424 [wrapper] Test setup, not cleaning
[2025-06-04 12:30:12] 2025-06-04 05:27:13,513 [wrapper] apfmon messages muted
[2025-06-04 12:30:12] 2025-06-04 05:27:13,612 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:30:12] 2025-06-04 05:27:13,688 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:30:12]  *** Error codes and diagnostics ***
[2025-06-04 12:30:12]     "exeErrorCode": 0,
[2025-06-04 12:30:12]     "exeErrorDiag": "",
[2025-06-04 12:30:12]     "pilotErrorCode": 0,
[2025-06-04 12:30:12]     "pilotErrorDiag": "",
[2025-06-04 12:30:12]  *** Listing of results directory ***
[2025-06-04 12:30:12] total 388012
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc    495897 Jun  3 15:40 pilot3.tar.gz
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc      5111 Jun  3 15:44 queuedata.json
[2025-06-04 12:30:12] -rwx------. 1 boinc boinc     37140 Jun  3 15:45 runpilot2-wrapper.sh
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc       100 Jun  4 03:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:30:12] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 03:52 run_atlas
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc       105 Jun  4 03:52 job.xml
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc      6391 Jun  4 03:52 init_data.xml
[2025-06-04 12:30:12] -rw-r--r--. 2 boinc boinc 215429284 Jun  4 03:52 EVNT.45006593._001384.pool.root.1
[2025-06-04 12:30:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:52 start_atlas.sh
[2025-06-04 12:30:12] drwxrwx--x. 2 boinc boinc        68 Jun  4 03:52 shared
[2025-06-04 12:30:12] -rw-r--r--. 2 boinc boinc    508882 Jun  4 03:52 input.tar.gz
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc         0 Jun  4 03:52 boinc_lockfile
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc      2525 Jun  4 03:52 pandaJob.out
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc    986077 Jun  4 03:52 agis_schedconf.cvmfs.json
[2025-06-04 12:30:12] drwx------. 4 boinc boinc      4096 Jun  4 03:52 pilot3
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc 175078501 Jun  4 07:23 HITS.45006595._034421.pool.root.1
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc       530 Jun  4 07:24 boinc_task_state.xml
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc      1017 Jun  4 07:25 memory_monitor_summary.json
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc   1603667 Jun  4 07:25 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc    381694 Jun  4 07:25 log.45006595._034421.job.log.tgz.1
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc        95 Jun  4 07:26 pilot_heartbeat.json
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc      7689 Jun  4 07:26 heartbeat.json
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc      4807 Jun  4 07:27 pilotlog.txt
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc   1114310 Jun  4 07:27 log.45006595._034421.job.log.1
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc       357 Jun  4 07:27 output.list
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc       620 Jun  4 07:27 runtime_log
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc   1515520 Jun  4 07:27 result.tar.gz
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc      8659 Jun  4 07:27 runtime_log.err
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc       656 Jun  4 07:27 hhENDmF8gg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPPkKDmZevpan.diag
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc      8192 Jun  4 12:30 boinc_mmap_file
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc        28 Jun  4 12:30 wrapper_checkpoint.txt
[2025-06-04 12:30:12] -rw-r--r--. 1 boinc boinc     20539 Jun  4 12:30 stderr.txt
[2025-06-04 12:30:12] HITS file was successfully produced:
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc 175078501 Jun  4 07:23 shared/HITS.pool.root.1
[2025-06-04 12:30:12]  *** Contents of shared directory: ***
[2025-06-04 12:30:12] total 383356
[2025-06-04 12:30:12] -rw-r--r--. 2 boinc boinc 215429284 Jun  4 03:52 ATLAS.root_0
[2025-06-04 12:30:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:52 start_atlas.sh
[2025-06-04 12:30:12] -rw-r--r--. 2 boinc boinc    508882 Jun  4 03:52 input.tar.gz
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc 175078501 Jun  4 07:23 HITS.pool.root.1
[2025-06-04 12:30:12] -rw-------. 1 boinc boinc   1515520 Jun  4 07:27 result.tar.gz
12:30:14 (1433): run_atlas exited; CPU time 48453.813408
12:30:14 (1433): called boinc_finish(0)

</stderr_txt>
]]>

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