Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:54:07 (29895): wrapper (7.7.26015): starting
02:54:07 (29895): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 02:54:07] Arguments: --nthreads 8
[2025-06-04 02:54:07] Threads: 8
[2025-06-04 02:54:07] Checking for CVMFS
[2025-06-04 02:54:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 02:54:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 02:54:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 02:54:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 02:54:10] 2.11.2.0 13438 32508 89316 146762 2 69 18654439 25165824 3906 130560 0 17864258 99.820 19189862 2182 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 02:54:10] CVMFS is ok
[2025-06-04 02:54:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 02:54:10] Checking for apptainer binary...
[2025-06-04 02:54:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 02:54:10] Running /usr/bin/apptainer --version
[2025-06-04 02:54:11] apptainer version 1.3.2-1.el7
[2025-06-04 02:54:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 02:59:44] cg-vwn257.simple-grid.lan
[2025-06-04 02:59:44] apptainer works
[2025-06-04 02:59:44] Set ATHENA_PROC_NUMBER=8
[2025-06-04 02:59:44] Set ATHENA_CORE_NUMBER=8
[2025-06-04 02:59:44] Starting ATLAS job with PandaID=6677635693
[2025-06-04 02:59:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:22:16]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:22:16] 2025-06-04 04:51:01,975 | INFO     | extracted standard info from prmon json
[2025-06-04 07:22:16] 2025-06-04 04:51:01,975 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:22:16] 2025-06-04 04:51:01,975 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:22:16] 2025-06-04 04:51:01,976 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:22:16] 2025-06-04 04:51:01,976 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:22:16] 2025-06-04 04:51:01,981 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:22:16] 2025-06-04 04:51:01,981 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 07:22:16] 2025-06-04 04:51:01,983 | INFO     | sum of deviations: 43983529029.50001
[2025-06-04 07:22:16] 2025-06-04 04:51:01,983 | INFO     | mean x: 1749005987.5
[2025-06-04 07:22:16] 2025-06-04 04:51:01,983 | INFO     | mean y: 2442910.152777778
[2025-06-04 07:22:16] 2025-06-04 04:51:01,984 | INFO     | -- intersect: -24615456879.02635
[2025-06-04 07:22:16] 2025-06-04 04:51:01,984 | INFO     | intersect: -24615456879.02635
[2025-06-04 07:22:16] 2025-06-04 04:51:01,984 | INFO     | chi2: 6.060141201567964
[2025-06-04 07:22:16] 2025-06-04 04:51:01,984 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 07:22:16] 2025-06-04 04:51:01,995 | INFO     | sum of deviations: 57128784571.99998
[2025-06-04 07:22:16] 2025-06-04 04:51:01,995 | INFO     | mean x: 1749005835.0
[2025-06-04 07:22:16] 2025-06-04 04:51:01,995 | INFO     | mean y: 2452173.5355450236
[2025-06-04 07:22:16] 2025-06-04 04:51:01,995 | INFO     | -- intersect: -34300398113.90166
[2025-06-04 07:22:16] 2025-06-04 04:51:01,995 | INFO     | intersect: -34300398113.90166
[2025-06-04 07:22:16] 2025-06-04 04:51:01,996 | INFO     | chi2: 5.348855315036854
[2025-06-04 07:22:16] 2025-06-04 04:51:01,996 | INFO     | current chi2=5.348855315036854 (change=11.73711738510443 %)
[2025-06-04 07:22:16] 2025-06-04 04:51:01,996 | INFO     | right removable region: 210
[2025-06-04 07:22:16] 2025-06-04 04:51:01,996 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 07:22:16] 2025-06-04 04:51:01,998 | INFO     | sum of deviations: -28237238428.0
[2025-06-04 07:22:16] 2025-06-04 04:51:01,998 | INFO     | mean x: 1749006140.0
[2025-06-04 07:22:16] 2025-06-04 04:51:01,998 | INFO     | mean y: 2494779.2464454975
[2025-06-04 07:22:16] 2025-06-04 04:51:01,998 | INFO     | -- intersect: 16957484080.96685
[2025-06-04 07:22:16] 2025-06-04 04:51:01,998 | INFO     | intersect: 16957484080.96685
[2025-06-04 07:22:16] 2025-06-04 04:51:01,999 | INFO     | chi2: 1.5569230708085673
[2025-06-04 07:22:16] 2025-06-04 04:51:01,999 | INFO     | current chi2=1.5569230708085673 (change=74.3087987717887 %)
[2025-06-04 07:22:16] 2025-06-04 04:51:01,999 | INFO     | sum of square deviations: 2710627567.5
[2025-06-04 07:22:16] 2025-06-04 04:51:02,001 | INFO     | sum of deviations: -48682796887.49999
[2025-06-04 07:22:16] 2025-06-04 04:51:02,001 | INFO     | mean x: 1749006292.5
[2025-06-04 07:22:16] 2025-06-04 04:51:02,001 | INFO     | mean y: 2510045.8980582524
[2025-06-04 07:22:16] 2025-06-04 04:51:02,001 | INFO     | -- intersect: 31414615166.361794
[2025-06-04 07:22:16] 2025-06-04 04:51:02,001 | INFO     | intersect: 31414615166.361794
[2025-06-04 07:22:16] 2025-06-04 04:51:02,001 | INFO     | chi2: 0.9785571078889943
[2025-06-04 07:22:16] 2025-06-04 04:51:02,002 | INFO     | current chi2=0.9785571078889943 (change=37.148011598235634 %)
[2025-06-04 07:22:16] 2025-06-04 04:51:02,002 | INFO     | sum of square deviations: 2518000700.0
[2025-06-04 07:22:16] 2025-06-04 04:51:02,003 | INFO     | sum of deviations: -44299919102.0
[2025-06-04 07:22:16] 2025-06-04 04:51:02,004 | INFO     | mean x: 1749006445.0
[2025-06-04 07:22:16] 2025-06-04 04:51:02,004 | INFO     | mean y: 2506545.0945273633
[2025-06-04 07:22:16] 2025-06-04 04:51:02,004 | INFO     | -- intersect: 30773285926.679535
[2025-06-04 07:22:16] 2025-06-04 04:51:02,004 | INFO     | intersect: 30773285926.679535
[2025-06-04 07:22:16] 2025-06-04 04:51:02,004 | INFO     | chi2: 0.9668140511155219
[2025-06-04 07:22:16] 2025-06-04 04:51:02,004 | INFO     | current chi2=0.9668140511155219 (change=1.2000379618932304 %)
[2025-06-04 07:22:16] 2025-06-04 04:51:02,004 | INFO     | left removable region: 30
[2025-06-04 07:22:16] 2025-06-04 04:51:02,005 | INFO     | sum of square deviations: 1808350185.0
[2025-06-04 07:22:16] 2025-06-04 04:51:02,006 | INFO     | sum of deviations: -8582839750.999998
[2025-06-04 07:22:16] 2025-06-04 04:51:02,006 | INFO     | mean x: 1749006719.5
[2025-06-04 07:22:16] 2025-06-04 04:51:02,006 | INFO     | mean y: 2498286.4
[2025-06-04 07:22:16] 2025-06-04 04:51:02,006 | INFO     | -- intersect: 8303680502.880214
[2025-06-04 07:22:16] 2025-06-04 04:51:02,006 | INFO     | intersect: 8303680502.880214
[2025-06-04 07:22:16] 2025-06-04 04:51:02,007 | INFO     | chi2: 0.09112675990479364
[2025-06-04 07:22:16] 2025-06-04 04:51:02,007 | INFO     | -- intersect: 8303680502.880214
[2025-06-04 07:22:16] 2025-06-04 04:51:02,007 | INFO     | current memory leak: -4.75 B/s (using 180 data points, chi2=0.09)
[2025-06-04 07:22:16] 2025-06-04 04:51:02,008 | INFO     | ..............................
[2025-06-04 07:22:16] 2025-06-04 04:51:02,008 | INFO     | . Timing measurements:
[2025-06-04 07:22:16] 2025-06-04 04:51:02,008 | INFO     | . get job = 0 s
[2025-06-04 07:22:16] 2025-06-04 04:51:02,008 | INFO     | . initial setup = 10 s
[2025-06-04 07:22:16] 2025-06-04 04:51:02,008 | INFO     | . payload setup = 141 s
[2025-06-04 07:22:16] 2025-06-04 04:51:02,008 | INFO     | . stage-in = 0 s
[2025-06-04 07:22:16] 2025-06-04 04:51:02,008 | INFO     | . payload execution = 13287 s
[2025-06-04 07:22:16] 2025-06-04 04:51:02,009 | INFO     | . stage-out = 3 s
[2025-06-04 07:22:16] 2025-06-04 04:51:02,009 | INFO     | . log creation = 1 s
[2025-06-04 07:22:16] 2025-06-04 04:51:02,009 | INFO     | ..............................
[2025-06-04 07:22:16] 2025-06-04 04:51:02,127 | INFO     | 
[2025-06-04 07:22:16] 2025-06-04 04:51:02,127 | INFO     | job summary report
[2025-06-04 07:22:16] 2025-06-04 04:51:02,127 | INFO     | --------------------------------------------------
[2025-06-04 07:22:16] 2025-06-04 04:51:02,127 | INFO     | PanDA job id: 6677635693
[2025-06-04 07:22:16] 2025-06-04 04:51:02,127 | INFO     | task id: 45006595
[2025-06-04 07:22:16] 2025-06-04 04:51:02,127 | INFO     | errors: (none)
[2025-06-04 07:22:16] 2025-06-04 04:51:02,127 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | pilot state: finished 
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | transexitcode: 0
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | exeerrorcode: 0
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | exeerrordiag: 
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | exitcode: 0
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | exitmsg: OK
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | cpuconsumptiontime: 49221 s
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | nevents: 400
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | neventsw: 0
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | pid: 18120
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | pgrp: 18120
[2025-06-04 07:22:16] 2025-06-04 04:51:02,128 | INFO     | corecount: 8
[2025-06-04 07:22:16] 2025-06-04 04:51:02,130 | INFO     | event service: False
[2025-06-04 07:22:16] 2025-06-04 04:51:02,130 | INFO     | sizes: {0: 2404356, 1: 2405041, 2: 2405240, 13: 2405240, 23: 2405296, 34: 2405324, 45: 2405480, 56: 2405508, 66: 2405536, 77: 2405564, 78: 2405826, 88: 2406162, 13
[2025-06-04 07:22:16] 2025-06-04 04:51:02,130 | INFO     | --------------------------------------------------
[2025-06-04 07:22:16] 2025-06-04 04:51:02,130 | INFO     | 
[2025-06-04 07:22:16] 2025-06-04 04:51:02,130 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 07:22:16] 2025-06-04 04:51:02,385 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,386 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,386 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,386 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,386 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,386 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,386 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,386 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,386 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,386 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,386 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,387 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,387 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,387 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,387 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,387 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,387 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,387 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:22:16] 2025-06-04 04:51:02,387 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,387 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:22:16] 2025-06-04 04:51:02,387 | INFO     | job 6677635693 has completed (purged errors)
[2025-06-04 07:22:16] 2025-06-04 04:51:02,388 | INFO     | overall cleanup function is called
[2025-06-04 07:22:16] 2025-06-04 04:51:03,397 | INFO     | --- collectZombieJob: --- 10, [18120]
[2025-06-04 07:22:16] 2025-06-04 04:51:03,397 | INFO     | zombie collector waiting for pid 18120
[2025-06-04 07:22:16] 2025-06-04 04:51:03,397 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:22:16] 2025-06-04 04:51:03,397 | INFO     | collected zombie processes
[2025-06-04 07:22:16] 2025-06-04 04:51:03,397 | INFO     | will attempt to kill all subprocesses of pid=18120
[2025-06-04 07:22:16] 2025-06-04 04:51:03,533 | INFO     | process IDs to be killed: [18120] (in reverse order)
[2025-06-04 07:22:16] 2025-06-04 04:51:04,457 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:22:16] 2025-06-04 04:51:04,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:22:16] 2025-06-04 04:51:04,461 | INFO     | did not find any defunct processes belonging to 18120
[2025-06-04 07:22:16] 2025-06-04 04:51:04,465 | INFO     | did not find any defunct processes belonging to 18120
[2025-06-04 07:22:16] 2025-06-04 04:51:04,465 | INFO     | ready for new job
[2025-06-04 07:22:16] 2025-06-04 04:51:04,465 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:22:16] 2025-06-04 04:51:04,467 | INFO     | **************************************
[2025-06-04 07:22:16] 2025-06-04 04:51:04,467 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:22:16] 2025-06-04 04:51:04,467 | INFO     | **************************************
[2025-06-04 07:22:16] 2025-06-04 04:51:04,467 | INFO     | 
[2025-06-04 07:22:16] 2025-06-04 04:51:04,468 | INFO     | pilot is running in a VM
[2025-06-04 07:22:16] 2025-06-04 04:51:04,468 | INFO     | architecture information:
[2025-06-04 07:22:16] 2025-06-04 04:51:04,472 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:22:16] 2025-06-04 04:51:04,649 | INFO     | cat /etc/os-release:
[2025-06-04 07:22:16] NAME="CentOS Linux"
[2025-06-04 07:22:16] VERSION="7 (Core)"
[2025-06-04 07:22:16] ID="centos"
[2025-06-04 07:22:16] ID_LIKE="rhel fedora"
[2025-06-04 07:22:16] VERSION_ID="7"
[2025-06-04 07:22:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:22:16] ANSI_COLOR="0;31"
[2025-06-04 07:22:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:22:16] HOME_URL="https://www.centos.org/"
[2025-06-04 07:22:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:22:16] 
[2025-06-04 07:22:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:22:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:22:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:22:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:22:16] 
[2025-06-04 07:22:16] 2025-06-04 04:51:04,650 | INFO     | **************************************
[2025-06-04 07:22:16] 2025-06-04 04:51:05,152 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 07:22:16] 2025-06-04 04:51:05,357 | INFO     | sufficient remaining disk space (496951623680 B)
[2025-06-04 07:22:16] 2025-06-04 04:51:05,358 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:22:16] 2025-06-04 04:51:05,358 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:22:16] 2025-06-04 04:51:05,358 | INFO     | update_server=False
[2025-06-04 07:22:16] 2025-06-04 04:51:05,358 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:22:16] 2025-06-04 04:51:05,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:22:16] 2025-06-04 04:51:05,360 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 07:22:16] 2025-06-04 04:51:05,360 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:22:16] 2025-06-04 04:51:05,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:22:16] 2025-06-04 04:51:05,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:22:16] 2025-06-04 04:51:05,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:22:16] 2025-06-04 04:51:05,363 | INFO     | aborting loop
[2025-06-04 07:22:16] 2025-06-04 04:51:05,505 | INFO     | all payload control threads have been joined
[2025-06-04 07:22:16] 2025-06-04 04:51:06,297 | INFO     | all job control threads have been joined
[2025-06-04 07:22:16] 2025-06-04 04:51:06,364 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:06,369 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:06,385 | INFO     | all data control threads have been joined
[2025-06-04 07:22:16] 2025-06-04 04:51:06,438 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:06,511 | INFO     | [payload] control thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:06,528 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:06,764 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:07,143 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:22:16] 2025-06-04 04:51:07,303 | INFO     | [job] control thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:07,354 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:07,366 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:07,391 | INFO     | [data] control thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:07,436 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:07,450 | INFO     | [job] validate thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:07,589 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:07,768 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:08,149 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:08,447 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:22:16] 2025-06-04 04:51:12,456 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:22:16] 2025-06-04 04:51:13,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139772662916928)>', '<ExcThread(monitor, started 139772353816320)>']
[2025-06-04 07:22:16] 2025-06-04 04:51:14,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:22:16] 2025-06-04 04:51:14,413 | INFO     | [monitor] control thread has ended
[2025-06-04 07:22:16] 2025-06-04 04:51:18,660 | INFO     | all workflow threads have been joined
[2025-06-04 07:22:16] 2025-06-04 04:51:18,660 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:22:16] 2025-06-04 04:51:18,660 | INFO     | traces error code: 0
[2025-06-04 07:22:16] 2025-06-04 04:51:18,660 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:22:16] 2025-06-04 04:51:18,890 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:22:16] 2025-06-04 04:51:18,898 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:22:16] 2025-06-04 04:51:18,907 [wrapper] pilotpid: 5537
[2025-06-04 07:22:16] 2025-06-04 04:51:19,001 [wrapper] Pilot exit status: 0
[2025-06-04 07:22:16] 2025-06-04 04:51:19,567 [wrapper] pandaids: 6677635693
[2025-06-04 07:22:16] 2025-06-04 04:51:20,467 [wrapper] cleanup supervisor_pilot 14383 5538
[2025-06-04 07:22:16] 2025-06-04 04:51:20,510 [wrapper] Test setup, not cleaning
[2025-06-04 07:22:16] 2025-06-04 04:51:20,587 [wrapper] apfmon messages muted
[2025-06-04 07:22:16] 2025-06-04 04:51:20,681 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:22:16] 2025-06-04 04:51:20,754 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:22:16]  *** Error codes and diagnostics ***
[2025-06-04 07:22:16]     "exeErrorCode": 0,
[2025-06-04 07:22:16]     "exeErrorDiag": "",
[2025-06-04 07:22:16]     "pilotErrorCode": 0,
[2025-06-04 07:22:16]     "pilotErrorDiag": "",
[2025-06-04 07:22:16]  *** Listing of results directory ***
[2025-06-04 07:22:16] total 389592
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc    495897 Jun  3 14:59 pilot3.tar.gz
[2025-06-04 07:22:16] -rwx------. 1 boinc boinc     37140 Jun  3 15:38 runpilot2-wrapper.sh
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc      5111 Jun  3 15:38 queuedata.json
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc       100 Jun  4 02:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:22:16] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 02:54 run_atlas
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc       105 Jun  4 02:54 job.xml
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc      6389 Jun  4 02:54 init_data.xml
[2025-06-04 07:22:16] -rw-r--r--. 2 boinc boinc 214633619 Jun  4 02:54 EVNT.45006593._001375.pool.root.1
[2025-06-04 07:22:16] -rw-r--r--. 2 boinc boinc     15093 Jun  4 02:54 start_atlas.sh
[2025-06-04 07:22:16] drwxrwx--x. 2 boinc boinc        68 Jun  4 02:54 shared
[2025-06-04 07:22:16] -rw-r--r--. 2 boinc boinc    508879 Jun  4 02:54 input.tar.gz
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc         0 Jun  4 02:54 boinc_lockfile
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc      2525 Jun  4 02:59 pandaJob.out
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc    986069 Jun  4 03:02 agis_schedconf.cvmfs.json
[2025-06-04 07:22:16] drwx------. 4 boinc boinc      4096 Jun  4 03:02 pilot3
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc 177371036 Jun  4 06:48 HITS.45006595._034197.pool.root.1
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc       531 Jun  4 06:48 boinc_task_state.xml
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc      1018 Jun  4 06:49 memory_monitor_summary.json
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc   1603667 Jun  4 06:49 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc    389847 Jun  4 06:49 log.45006595._034197.job.log.tgz.1
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc        95 Jun  4 06:50 pilot_heartbeat.json
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc      7690 Jun  4 06:51 heartbeat.json
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc      4539 Jun  4 06:51 pilotlog.txt
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc   1169630 Jun  4 06:51 log.45006595._034197.job.log.1
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc       357 Jun  4 06:51 output.list
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc       620 Jun  4 06:51 runtime_log
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc   1576960 Jun  4 06:51 result.tar.gz
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc       657 Jun  4 06:51 rVVLDmW1gg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmXmYKDmBeqdEn.diag
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc      8659 Jun  4 06:51 runtime_log.err
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc      8192 Jun  4 07:22 boinc_mmap_file
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc        28 Jun  4 07:22 wrapper_checkpoint.txt
[2025-06-04 07:22:16] -rw-r--r--. 1 boinc boinc     20501 Jun  4 07:22 stderr.txt
[2025-06-04 07:22:16] HITS file was successfully produced:
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc 177371036 Jun  4 06:48 shared/HITS.pool.root.1
[2025-06-04 07:22:16]  *** Contents of shared directory: ***
[2025-06-04 07:22:16] total 384876
[2025-06-04 07:22:16] -rw-r--r--. 2 boinc boinc 214633619 Jun  4 02:54 ATLAS.root_0
[2025-06-04 07:22:16] -rw-r--r--. 2 boinc boinc     15093 Jun  4 02:54 start_atlas.sh
[2025-06-04 07:22:16] -rw-r--r--. 2 boinc boinc    508879 Jun  4 02:54 input.tar.gz
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc 177371036 Jun  4 06:48 HITS.pool.root.1
[2025-06-04 07:22:16] -rw-------. 1 boinc boinc   1576960 Jun  4 06:51 result.tar.gz
07:22:18 (29895): run_atlas exited; CPU time 49411.646559
07:22:18 (29895): called boinc_finish(0)

</stderr_txt>
]]>

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