Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:17:29 (1509844): wrapper (7.7.26015): starting
12:17:29 (1509844): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 12:17:29] Arguments: --nthreads 8
[2025-06-03 12:17:29] Threads: 8
[2025-06-03 12:17:29] Checking for CVMFS
[2025-06-03 12:17:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 12:17:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 12:17:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 12:17:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 12:17:29] 2.12.6.0 706982 37791 279200 146749 1 187 23605405 25181184 4324 16776704 3 189369957 99.557 220094025 24640 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 12:17:29] CVMFS is ok
[2025-06-03 12:17:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 12:17:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 12:17:29] Further information can be found at the LHC@home message board.
[2025-06-03 12:17:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:17:29] Checking for apptainer binary...
[2025-06-03 12:17:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 12:17:29] Running /usr/bin/apptainer --version
[2025-06-03 12:17:29] apptainer version 1.4.1-1.el9
[2025-06-03 12:17:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:17:30] c-16-34.aglt2.org
[2025-06-03 12:17:30] apptainer works
[2025-06-03 12:17:30] Set ATHENA_PROC_NUMBER=8
[2025-06-03 12:17:30] Set ATHENA_CORE_NUMBER=8
[2025-06-03 12:17:30] Starting ATLAS job with PandaID=6677635195
[2025-06-03 12:17:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:59:03]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:59:03]  storage_token=
[2025-06-03 13:59:03]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6677635195/log.45006595._033841.job.log.tgz.1
[2025-06-03 13:59:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/15/log.45006595._033841.job.log.tgz.1
[2025-06-03 13:59:03]  workdir=None
[2025-06-03 13:59:03] ]
[2025-06-03 13:59:03] 2025-06-03 17:58:37,851 | INFO     | transferring file log.45006595._033841.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6677635195/log.45006595._033841.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 13:59:03] 2025-06-03 17:58:37,851 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6677635195/log.45006595._033841.job.log.tgz.1 /tmp/boinchome/slots/4/log.45006595._033841.job
[2025-06-03 13:59:03] 2025-06-03 17:58:37,866 | INFO     | adding to output.list: log.45006595._033841.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/15/log.45006595._033841.job.log.tg
[2025-06-03 13:59:03] 2025-06-03 17:58:37,867 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 13:59:03] 2025-06-03 17:58:37,867 | INFO     | summary of transferred files:
[2025-06-03 13:59:03] 2025-06-03 17:58:37,867 | INFO     |  -- lfn=log.45006595._033841.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 13:59:03] 2025-06-03 17:58:37,867 | INFO     | stage-out finished correctly
[2025-06-03 13:59:03] 2025-06-03 17:58:40,865 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 13:59:03] 2025-06-03 17:58:40,972 | INFO     | job 6677635195 has state=finished
[2025-06-03 13:59:03] 2025-06-03 17:58:40,972 | INFO     | preparing for final server update for job 6677635195 in state='finished'
[2025-06-03 13:59:03] 2025-06-03 17:58:41,038 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-03 13:59:03] 2025-06-03 17:58:41,039 | INFO     | this job has now completed (state=finished)
[2025-06-03 13:59:03] 2025-06-03 17:58:41,039 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 13:59:03] 2025-06-03 17:58:41,039 | INFO     | log transfer has been attempted: DONE
[2025-06-03 13:59:03] 2025-06-03 17:58:41,040 | INFO     | job 6677635195 has finished - writing final server update
[2025-06-03 13:59:03] 2025-06-03 17:58:41,040 | INFO     | total number of processed events: 400 (read)
[2025-06-03 13:59:03] 2025-06-03 17:58:41,057 | INFO     | executing command: lscpu
[2025-06-03 13:59:03] 2025-06-03 17:58:41,128 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 13:59:03] 2025-06-03 17:58:41,388 | INFO     | PID=1513483 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 13:59:03] 2025-06-03 17:58:41,389 | INFO     | .. there are 6 such processes running
[2025-06-03 13:59:03] 2025-06-03 17:58:42,548 | WARNING  | process 1520510 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 13:59:03] 2025-06-03 17:58:42,549 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6677635195/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:59:03] 2025-06-03 17:58:42,550 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6677635195/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:59:03] 2025-06-03 17:58:42,551 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3578568 B
[2025-06-03 13:59:03] 2025-06-03 17:58:42,551 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15777 B
[2025-06-03 13:59:03] 2025-06-03 17:58:42,551 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-06-03 13:59:03] 2025-06-03 17:58:44,531 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 13:59:03] 2025-06-03 17:58:44,536 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6677635195/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:59:03] 2025-06-03 17:58:44,538 | INFO     | extracted standard info from prmon json
[2025-06-03 13:59:03] 2025-06-03 17:58:44,538 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:59:03] 2025-06-03 17:58:44,538 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:59:03] 2025-06-03 17:58:44,538 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:59:03] 2025-06-03 17:58:44,538 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:59:03] 2025-06-03 17:58:44,541 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:59:03] 2025-06-03 17:58:44,541 | INFO     | sum of square deviations: 241429643.0
[2025-06-03 13:59:03] 2025-06-03 17:58:44,542 | INFO     | sum of deviations: 10196908473.999998
[2025-06-03 13:59:03] 2025-06-03 17:58:44,542 | INFO     | mean x: 1748970564.5
[2025-06-03 13:59:03] 2025-06-03 17:58:44,542 | INFO     | mean y: 2142295.565217391
[2025-06-03 13:59:03] 2025-06-03 17:58:44,542 | INFO     | -- intersect: -73866553148.45949
[2025-06-03 13:59:03] 2025-06-03 17:58:44,542 | INFO     | intersect: -73866553148.45949
[2025-06-03 13:59:03] 2025-06-03 17:58:44,543 | INFO     | chi2: 1.068905382380094
[2025-06-03 13:59:03] 2025-06-03 17:58:44,543 | INFO     | -- intersect: -73866553148.45949
[2025-06-03 13:59:03] 2025-06-03 17:58:44,543 | INFO     | sufficient remaining disk space (62000201728 B)
[2025-06-03 13:59:03] 2025-06-03 17:58:44,544 | INFO     | current memory leak: 42.24 B/s (using 92 data points, chi2=1.07)
[2025-06-03 13:59:03] 2025-06-03 17:58:44,544 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-03 13:59:03] 2025-06-03 17:58:44,544 | INFO     | ..............................
[2025-06-03 13:59:03] 2025-06-03 17:58:44,545 | INFO     | . Timing measurements:
[2025-06-03 13:59:03] 2025-06-03 17:58:44,545 | INFO     | . get job = 0 s
[2025-06-03 13:59:03] 2025-06-03 17:58:44,545 | INFO     | . initial setup = 2 s
[2025-06-03 13:59:03] 2025-06-03 17:58:44,545 | INFO     | . payload setup = 5 s
[2025-06-03 13:59:03] 2025-06-03 17:58:44,545 | INFO     | . stage-in = 0 s
[2025-06-03 13:59:03] 2025-06-03 17:58:44,545 | INFO     | . payload execution = 6032 s
[2025-06-03 13:59:03] 2025-06-03 17:58:44,545 | INFO     | . stage-out = 0 s
[2025-06-03 13:59:03] 2025-06-03 17:58:44,546 | INFO     | . log creation = 0 s
[2025-06-03 13:59:03] 2025-06-03 17:58:44,546 | INFO     | ..............................
[2025-06-03 13:59:03] 2025-06-03 17:58:44,648 | INFO     | 
[2025-06-03 13:59:03] 2025-06-03 17:58:44,649 | INFO     | job summary report
[2025-06-03 13:59:03] 2025-06-03 17:58:44,649 | INFO     | --------------------------------------------------
[2025-06-03 13:59:03] 2025-06-03 17:58:44,649 | INFO     | PanDA job id: 6677635195
[2025-06-03 13:59:03] 2025-06-03 17:58:44,649 | INFO     | task id: 45006595
[2025-06-03 13:59:03] 2025-06-03 17:58:44,649 | INFO     | errors: (none)
[2025-06-03 13:59:03] 2025-06-03 17:58:44,650 | INFO     | size of work directory /tmp/boinchome/slots/4/PanDA_Pilot-6677635195: 3914494 B (within 2537553920 B limit)
[2025-06-03 13:59:03] 2025-06-03 17:58:44,650 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:59:03] 2025-06-03 17:58:44,650 | INFO     | pilot state: finished 
[2025-06-03 13:59:03] 2025-06-03 17:58:44,650 | INFO     | pfn file=/tmp/boinchome/slots/4/PanDA_Pilot-6677635195/HITS.45006595._033841.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-03 13:59:03] 2025-06-03 17:58:44,650 | INFO     | transexitcode: 0
[2025-06-03 13:59:03] 2025-06-03 17:58:44,651 | INFO     | total size of present files: 0 B (workdir size: 3914494 B)
[2025-06-03 13:59:03] 2025-06-03 17:58:44,651 | INFO     | exeerrorcode: 0
[2025-06-03 13:59:03] 2025-06-03 17:58:44,651 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/4/PanDA_Pilot-6677635195/HITS.45006595._033841.pool.root.1 since it does not exist
[2025-06-03 13:59:03] 2025-06-03 17:58:44,651 | INFO     | exeerrordiag: 
[2025-06-03 13:59:03] 2025-06-03 17:58:44,652 | INFO     | exitcode: 0
[2025-06-03 13:59:03] 2025-06-03 17:58:44,652 | INFO     | exitmsg: OK
[2025-06-03 13:59:03] 2025-06-03 17:58:44,652 | INFO     | cpuconsumptiontime: 41767 s
[2025-06-03 13:59:03] 2025-06-03 17:58:44,652 | INFO     | nevents: 400
[2025-06-03 13:59:03] 2025-06-03 17:58:44,652 | INFO     | neventsw: 0
[2025-06-03 13:59:03] 2025-06-03 17:58:44,652 | INFO     | pid: 1520510
[2025-06-03 13:59:03] 2025-06-03 17:58:44,652 | INFO     | pgrp: 1520510
[2025-06-03 13:59:03] 2025-06-03 17:58:44,653 | INFO     | corecount: 8
[2025-06-03 13:59:03] 2025-06-03 17:58:44,653 | INFO     | event service: False
[2025-06-03 13:59:03] 2025-06-03 17:58:44,653 | INFO     | sizes: {0: 2405126, 4: 2405332, 11: 2405360, 6042: 2432127, 6043: 2432126, 6044: 2441123, 6047: 2441307, 6050: 2441477}
[2025-06-03 13:59:03] 2025-06-03 17:58:44,653 | INFO     | --------------------------------------------------
[2025-06-03 13:59:03] 2025-06-03 17:58:44,653 | INFO     | 
[2025-06-03 13:59:03] 2025-06-03 17:58:44,654 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-06-03 13:59:03] 2025-06-03 17:58:44,670 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,670 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,671 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,671 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,671 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,671 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,671 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,672 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,672 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,672 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,672 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,672 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,673 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,673 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,673 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,673 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,674 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,674 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:59:03] 2025-06-03 17:58:44,674 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,674 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:59:03] 2025-06-03 17:58:44,674 | INFO     | job 6677635195 has completed (purged errors)
[2025-06-03 13:59:03] 2025-06-03 17:58:44,675 | INFO     | overall cleanup function is called
[2025-06-03 13:59:03] 2025-06-03 17:58:44,979 | INFO     | number of running child processes to parent process 1520510: 1
[2025-06-03 13:59:03] 2025-06-03 17:58:44,980 | INFO     | maximum number of monitored processes: 6
[2025-06-03 13:59:03] 2025-06-03 17:58:44,980 | INFO     | aborting job monitoring since job object (job id=6677635195) has expired
[2025-06-03 13:59:03] 2025-06-03 17:58:45,684 | INFO     | --- collectZombieJob: --- 10, [1520510]
[2025-06-03 13:59:03] 2025-06-03 17:58:45,684 | INFO     | zombie collector waiting for pid 1520510
[2025-06-03 13:59:03] 2025-06-03 17:58:45,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:59:03] 2025-06-03 17:58:45,685 | INFO     | collected zombie processes
[2025-06-03 13:59:03] 2025-06-03 17:58:45,685 | INFO     | will attempt to kill all subprocesses of pid=1520510
[2025-06-03 13:59:03] 2025-06-03 17:58:45,991 | INFO     | process IDs to be killed: [1520510] (in reverse order)
[2025-06-03 13:59:03] 2025-06-03 17:58:46,072 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:59:03] 2025-06-03 17:58:46,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:59:03] 2025-06-03 17:58:46,082 | INFO     | did not find any defunct processes belonging to 1520510
[2025-06-03 13:59:03] 2025-06-03 17:58:46,090 | INFO     | did not find any defunct processes belonging to 1520510
[2025-06-03 13:59:03] 2025-06-03 17:58:46,091 | INFO     | ready for new job
[2025-06-03 13:59:03] 2025-06-03 17:58:46,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:59:03] 2025-06-03 17:58:46,094 | INFO     | **************************************
[2025-06-03 13:59:03] 2025-06-03 17:58:46,094 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:59:03] 2025-06-03 17:58:46,094 | INFO     | **************************************
[2025-06-03 13:59:03] 2025-06-03 17:58:46,094 | INFO     | 
[2025-06-03 13:59:03] 2025-06-03 17:58:46,109 | INFO     | architecture information:
[2025-06-03 13:59:03] 2025-06-03 17:58:46,109 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:59:03] 2025-06-03 17:58:46,122 | INFO     | cat /etc/os-release:
[2025-06-03 13:59:03] NAME="CentOS Linux"
[2025-06-03 13:59:03] VERSION="7 (Core)"
[2025-06-03 13:59:03] ID="centos"
[2025-06-03 13:59:03] ID_LIKE="rhel fedora"
[2025-06-03 13:59:03] VERSION_ID="7"
[2025-06-03 13:59:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:59:03] ANSI_COLOR="0;31"
[2025-06-03 13:59:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:59:03] HOME_URL="https://www.centos.org/"
[2025-06-03 13:59:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:59:03] 
[2025-06-03 13:59:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:59:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:59:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:59:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:59:03] 
[2025-06-03 13:59:03] 2025-06-03 17:58:46,122 | INFO     | **************************************
[2025-06-03 13:59:03] 2025-06-03 17:58:46,626 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-06-03 13:59:03] 2025-06-03 17:58:46,640 | INFO     | sufficient remaining disk space (62005444608 B)
[2025-06-03 13:59:03] 2025-06-03 17:58:46,640 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:59:03] 2025-06-03 17:58:46,640 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:59:03] 2025-06-03 17:58:46,641 | INFO     | update_server=False
[2025-06-03 13:59:03] 2025-06-03 17:58:46,641 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:59:03] 2025-06-03 17:58:46,641 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:59:03] 2025-06-03 17:58:46,641 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:59:03] 2025-06-03 17:58:46,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:59:03] 2025-06-03 17:58:46,642 | INFO     | aborting loop
[2025-06-03 13:59:03] 2025-06-03 17:58:46,977 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:59:03] 2025-06-03 17:58:46,985 | INFO     | all data control threads have been joined
[2025-06-03 13:59:03] 2025-06-03 17:58:47,405 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:59:03] 2025-06-03 17:58:47,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:59:03] 2025-06-03 17:58:47,405 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:59:03] 2025-06-03 17:58:47,644 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:47,646 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:47,647 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:47,718 | INFO     | all payload control threads have been joined
[2025-06-03 13:59:03] 2025-06-03 17:58:47,725 | INFO     | all job control threads have been joined
[2025-06-03 13:59:03] 2025-06-03 17:58:47,968 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:47,990 | INFO     | [data] control thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:48,159 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:48,272 | INFO     | [job] validate thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:48,610 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:48,637 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:48,647 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:48,724 | INFO     | [payload] control thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:48,728 | INFO     | [job] control thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:48,781 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:49,248 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:50,983 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:56,802 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:59:03] 2025-06-03 17:58:57,807 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:59:03] 2025-06-03 17:58:58,270 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140576818702144)>', '<ExcThread(monitor, started 140576334792448)>']
[2025-06-03 13:59:03] 2025-06-03 17:58:58,455 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:59:03] 2025-06-03 17:58:58,455 | INFO     | [monitor] control thread has ended
[2025-06-03 13:59:03] 2025-06-03 17:59:03,296 | INFO     | all workflow threads have been joined
[2025-06-03 13:59:03] 2025-06-03 17:59:03,296 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:59:03] 2025-06-03 17:59:03,297 | INFO     | traces error code: 0
[2025-06-03 13:59:03] 2025-06-03 17:59:03,297 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:59:03] 2025-06-03 17:59:03,445 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:59:03] 2025-06-03 17:59:03,447 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:59:03] 2025-06-03 17:59:03,450 [wrapper] pilotpid: 1513483
[2025-06-03 13:59:03] 2025-06-03 17:59:03,452 [wrapper] Pilot exit status: 0
[2025-06-03 13:59:03] 2025-06-03 17:59:03,460 [wrapper] pandaids: 6677635195
[2025-06-03 13:59:03] 2025-06-03 17:59:03,515 [wrapper] cleanup supervisor_pilot 1734924 1513484
[2025-06-03 13:59:03] 2025-06-03 17:59:03,518 [wrapper] Test setup, not cleaning
[2025-06-03 13:59:03] 2025-06-03 17:59:03,520 [wrapper] apfmon messages muted
[2025-06-03 13:59:03] 2025-06-03 17:59:03,523 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:59:03] 2025-06-03 17:59:03,525 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:59:03]  *** Error codes and diagnostics ***
[2025-06-03 13:59:03]     "exeErrorCode": 0,
[2025-06-03 13:59:03]     "exeErrorDiag": "",
[2025-06-03 13:59:03]     "pilotErrorCode": 0,
[2025-06-03 13:59:03]     "pilotErrorDiag": "",
[2025-06-03 13:59:03]  *** Listing of results directory ***
[2025-06-03 13:59:03] total 385040
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 08:59 pilot3.tar.gz
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 09:25 queuedata.json
[2025-06-03 13:59:03] -rwx------. 1 boincer umatlas     37140 Jun  3 09:26 runpilot2-wrapper.sh
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas       100 Jun  3 12:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:59:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 12:17 run_atlas
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas       105 Jun  3 12:17 job.xml
[2025-06-03 13:59:03] -rw-r--r--. 2 boincer umatlas 216139002 Jun  3 12:17 EVNT.45006593._000061.pool.root.1
[2025-06-03 13:59:03] -rw-r--r--. 2 boincer umatlas    508882 Jun  3 12:17 input.tar.gz
[2025-06-03 13:59:03] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 12:17 start_atlas.sh
[2025-06-03 13:59:03] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 12:17 shared
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas         0 Jun  3 12:17 boinc_lockfile
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas      2521 Jun  3 12:17 pandaJob.out
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas    983734 Jun  3 12:17 agis_schedconf.cvmfs.json
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas   1603667 Jun  3 12:17 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:59:03] drwx------. 4 boincer umatlas      4096 Jun  3 12:17 pilot3
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas      6613 Jun  3 13:57 init_data.xml
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas 172501918 Jun  3 13:58 HITS.45006595._033841.pool.root.1
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas       530 Jun  3 13:58 boinc_task_state.xml
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas        95 Jun  3 13:58 pilot_heartbeat.json
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas      1032 Jun  3 13:58 memory_monitor_summary.json
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas    327616 Jun  3 13:58 log.45006595._033841.job.log.tgz.1
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas      7706 Jun  3 13:58 heartbeat.json
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas        27 Jun  3 13:58 wrapper_checkpoint.txt
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 13:58 boinc_mmap_file
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas      4425 Jun  3 13:59 pilotlog.txt
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas    577935 Jun  3 13:59 log.45006595._033841.job.log.1
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas       357 Jun  3 13:59 output.list
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas       620 Jun  3 13:59 runtime_log
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas    921600 Jun  3 13:59 result.tar.gz
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas       650 Jun  3 13:59 Xt7MDm9pgg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmCiYKDmu4ECUo.diag
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas      8654 Jun  3 13:59 runtime_log.err
[2025-06-03 13:59:03] -rw-r--r--. 1 boincer umatlas     22462 Jun  3 13:59 stderr.txt
[2025-06-03 13:59:03] HITS file was successfully produced:
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas 172501918 Jun  3 13:58 shared/HITS.pool.root.1
[2025-06-03 13:59:03]  *** Contents of shared directory: ***
[2025-06-03 13:59:03] total 380956
[2025-06-03 13:59:03] -rw-r--r--. 2 boincer umatlas 216139002 Jun  3 12:17 ATLAS.root_0
[2025-06-03 13:59:03] -rw-r--r--. 2 boincer umatlas    508882 Jun  3 12:17 input.tar.gz
[2025-06-03 13:59:03] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 12:17 start_atlas.sh
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas 172501918 Jun  3 13:58 HITS.pool.root.1
[2025-06-03 13:59:03] -rw-------. 1 boincer umatlas    921600 Jun  3 13:59 result.tar.gz
13:59:05 (1509844): run_atlas exited; CPU time 41958.082659
13:59:05 (1509844): called boinc_finish(0)

</stderr_txt>
]]>

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