Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:03:33 (16816): wrapper (7.7.26015): starting
12:03:33 (16816): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 12:03:33] Arguments: --nthreads 4
[2025-06-03 12:03:33] Threads: 4
[2025-06-03 12:03:33] Checking for CVMFS
[2025-06-03 12:03:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 12:03:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 12:03:33] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 12:03:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 12:03:33] 2.11.2.0 3101 15208 75756 146748 2 60 14577162 20275201 1 130560 0 6867395 99.982 2923306 4192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 12:03:33] CVMFS is ok
[2025-06-03 12:03:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 12:03:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 12:03:33] Further information can be found at the LHC@home message board.
[2025-06-03 12:03:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:03:33] Checking for apptainer binary...
[2025-06-03 12:03:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 12:03:33] Running /usr/bin/apptainer --version
[2025-06-03 12:03:33] apptainer version 1.3.2-1.el7
[2025-06-03 12:03:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:03:34] c-204-15.aglt2.org
[2025-06-03 12:03:34] apptainer works
[2025-06-03 12:03:34] Set ATHENA_PROC_NUMBER=4
[2025-06-03 12:03:34] Set ATHENA_CORE_NUMBER=4
[2025-06-03 12:03:34] Starting ATLAS job with PandaID=6677621700
[2025-06-03 12:03:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:12:08 (9893): wrapper (7.7.26015): starting
14:12:08 (9893): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 14:12:08] Arguments: --nthreads 4
[2025-06-03 14:12:08] Threads: 4
[2025-06-03 14:12:08] This job has been restarted, cleaning up previous attempt
[2025-06-03 14:12:08] Checking for CVMFS
[2025-06-03 14:12:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 14:12:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 14:12:08] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 14:12:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 14:12:08] 2.11.2.0 3101 15337 76608 146751 1 1 14651406 20275201 1 130560 0 6952247 99.982 2927276 4197 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 14:12:08] CVMFS is ok
[2025-06-03 14:12:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 14:12:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 14:12:08] Further information can be found at the LHC@home message board.
[2025-06-03 14:12:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 14:12:08] Checking for apptainer binary...
[2025-06-03 14:12:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 14:12:08] Running /usr/bin/apptainer --version
[2025-06-03 14:12:08] apptainer version 1.3.2-1.el7
[2025-06-03 14:12:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 14:12:09] c-204-15.aglt2.org
[2025-06-03 14:12:09] apptainer works
[2025-06-03 14:12:09] Set ATHENA_PROC_NUMBER=4
[2025-06-03 14:12:09] Set ATHENA_CORE_NUMBER=4
[2025-06-03 14:12:09] Starting ATLAS job with PandaID=6677621700
[2025-06-03 14:12:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 17:53:45]  *** The last 200 lines of the pilot log: ***
[2025-06-03 17:53:45] 2025-06-03 21:53:30,963 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677621700/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 17:53:45] 2025-06-03 21:53:30,964 | INFO     | extracted standard info from prmon json
[2025-06-03 17:53:45] 2025-06-03 21:53:30,964 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 17:53:45] 2025-06-03 21:53:30,964 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 17:53:45] 2025-06-03 21:53:30,965 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 17:53:45] 2025-06-03 21:53:30,965 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 17:53:45] 2025-06-03 21:53:30,971 | INFO     | fitting pss+swap vs Time
[2025-06-03 17:53:45] 2025-06-03 21:53:30,972 | INFO     | sum of square deviations: 3168461268.0
[2025-06-03 17:53:45] 2025-06-03 21:53:30,973 | INFO     | sum of deviations: 22060822264.0
[2025-06-03 17:53:45] 2025-06-03 21:53:30,974 | INFO     | mean x: 1748980955.0
[2025-06-03 17:53:45] 2025-06-03 21:53:30,974 | INFO     | mean y: 2316976.115207373
[2025-06-03 17:53:45] 2025-06-03 21:53:30,974 | INFO     | -- intersect: -12175189620.243156
[2025-06-03 17:53:45] 2025-06-03 21:53:30,974 | INFO     | intersect: -12175189620.243156
[2025-06-03 17:53:45] 2025-06-03 21:53:30,974 | INFO     | chi2: 1.2924765280149948
[2025-06-03 17:53:45] 2025-06-03 21:53:30,975 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 17:53:45] 2025-06-03 21:53:30,976 | INFO     | sum of deviations: 21534013362.500004
[2025-06-03 17:53:45] 2025-06-03 21:53:30,976 | INFO     | mean x: 1748980802.5
[2025-06-03 17:53:45] 2025-06-03 21:53:30,976 | INFO     | mean y: 2316600.6650943398
[2025-06-03 17:53:45] 2025-06-03 21:53:30,976 | INFO     | -- intersect: -12745437487.724825
[2025-06-03 17:53:45] 2025-06-03 21:53:30,976 | INFO     | intersect: -12745437487.724825
[2025-06-03 17:53:45] 2025-06-03 21:53:30,977 | INFO     | chi2: 1.293106952116231
[2025-06-03 17:53:45] 2025-06-03 21:53:30,977 | INFO     | current chi2=1.293106952116231 (change=-0.048776444877066734 %)
[2025-06-03 17:53:45] 2025-06-03 21:53:30,977 | INFO     | right removable region: 211
[2025-06-03 17:53:45] 2025-06-03 21:53:30,977 | INFO     | sum of square deviations: 2954447953.0
[2025-06-03 17:53:45] 2025-06-03 21:53:30,979 | INFO     | sum of deviations: -2663154409.0
[2025-06-03 17:53:45] 2025-06-03 21:53:30,979 | INFO     | mean x: 1748981107.5
[2025-06-03 17:53:45] 2025-06-03 21:53:30,979 | INFO     | mean y: 2334346.5
[2025-06-03 17:53:45] 2025-06-03 21:53:30,979 | INFO     | -- intersect: 1578874810.8418093
[2025-06-03 17:53:45] 2025-06-03 21:53:30,979 | INFO     | intersect: 1578874810.8418093
[2025-06-03 17:53:45] 2025-06-03 21:53:30,979 | INFO     | chi2: 0.03840605084950671
[2025-06-03 17:53:45] 2025-06-03 21:53:30,980 | INFO     | current chi2=0.03840605084950671 (change=97.02849142579855 %)
[2025-06-03 17:53:45] 2025-06-03 21:53:30,980 | INFO     | sum of square deviations: 2750295288.0
[2025-06-03 17:53:45] 2025-06-03 21:53:30,981 | INFO     | sum of deviations: -6470596350.000001
[2025-06-03 17:53:45] 2025-06-03 21:53:30,981 | INFO     | mean x: 1748981260.0
[2025-06-03 17:53:45] 2025-06-03 21:53:30,981 | INFO     | mean y: 2337201.574879227
[2025-06-03 17:53:45] 2025-06-03 21:53:30,981 | INFO     | -- intersect: 4117150547.8188853
[2025-06-03 17:53:45] 2025-06-03 21:53:30,982 | INFO     | intersect: 4117150547.8188853
[2025-06-03 17:53:45] 2025-06-03 21:53:30,982 | INFO     | chi2: 0.009004895576513523
[2025-06-03 17:53:45] 2025-06-03 21:53:30,982 | INFO     | current chi2=0.009004895576513523 (change=76.55344567500832 %)
[2025-06-03 17:53:45] 2025-06-03 21:53:30,982 | INFO     | sum of square deviations: 2555770710.5
[2025-06-03 17:53:45] 2025-06-03 21:53:30,983 | INFO     | sum of deviations: -6821644091.000001
[2025-06-03 17:53:45] 2025-06-03 21:53:30,984 | INFO     | mean x: 1748981412.5
[2025-06-03 17:53:45] 2025-06-03 21:53:30,984 | INFO     | mean y: 2337473.198019802
[2025-06-03 17:53:45] 2025-06-03 21:53:30,984 | INFO     | -- intersect: 4670568730.733382
[2025-06-03 17:53:45] 2025-06-03 21:53:30,984 | INFO     | intersect: 4670568730.733382
[2025-06-03 17:53:45] 2025-06-03 21:53:30,984 | INFO     | chi2: 0.008239794455548599
[2025-06-03 17:53:45] 2025-06-03 21:53:30,984 | INFO     | current chi2=0.008239794455548599 (change=8.496501869055022 %)
[2025-06-03 17:53:45] 2025-06-03 21:53:30,985 | INFO     | left removable region: 30
[2025-06-03 17:53:45] 2025-06-03 21:53:30,985 | INFO     | sum of square deviations: 1838657730.0
[2025-06-03 17:53:45] 2025-06-03 21:53:30,986 | INFO     | sum of deviations: -4760199660.0
[2025-06-03 17:53:45] 2025-06-03 21:53:30,986 | INFO     | mean x: 1748981687.0
[2025-06-03 17:53:45] 2025-06-03 21:53:30,986 | INFO     | mean y: 2335841.1602209946
[2025-06-03 17:53:45] 2025-06-03 21:53:30,986 | INFO     | -- intersect: 4530368381.40012
[2025-06-03 17:53:45] 2025-06-03 21:53:30,986 | INFO     | intersect: 4530368381.40012
[2025-06-03 17:53:45] 2025-06-03 21:53:30,987 | INFO     | chi2: 0.007807698045218406
[2025-06-03 17:53:45] 2025-06-03 21:53:30,987 | INFO     | -- intersect: 4530368381.40012
[2025-06-03 17:53:45] 2025-06-03 21:53:30,987 | INFO     | current memory leak: -2.59 B/s (using 181 data points, chi2=0.01)
[2025-06-03 17:53:45] 2025-06-03 21:53:30,987 | INFO     | ..............................
[2025-06-03 17:53:45] 2025-06-03 21:53:30,988 | INFO     | . Timing measurements:
[2025-06-03 17:53:45] 2025-06-03 21:53:30,988 | INFO     | . get job = 0 s
[2025-06-03 17:53:45] 2025-06-03 21:53:30,988 | INFO     | . initial setup = 1 s
[2025-06-03 17:53:45] 2025-06-03 21:53:30,988 | INFO     | . payload setup = 7 s
[2025-06-03 17:53:45] 2025-06-03 21:53:30,988 | INFO     | . stage-in = 0 s
[2025-06-03 17:53:45] 2025-06-03 21:53:30,988 | INFO     | . payload execution = 13237 s
[2025-06-03 17:53:45] 2025-06-03 21:53:30,988 | INFO     | . stage-out = 2 s
[2025-06-03 17:53:45] 2025-06-03 21:53:30,988 | INFO     | . log creation = 0 s
[2025-06-03 17:53:45] 2025-06-03 21:53:30,988 | INFO     | ..............................
[2025-06-03 17:53:45] 2025-06-03 21:53:31,432 | INFO     | 
[2025-06-03 17:53:45] 2025-06-03 21:53:31,432 | INFO     | job summary report
[2025-06-03 17:53:45] 2025-06-03 21:53:31,433 | INFO     | --------------------------------------------------
[2025-06-03 17:53:45] 2025-06-03 21:53:31,433 | INFO     | PanDA job id: 6677621700
[2025-06-03 17:53:45] 2025-06-03 21:53:31,433 | INFO     | task id: 45006595
[2025-06-03 17:53:45] 2025-06-03 21:53:31,433 | INFO     | errors: (none)
[2025-06-03 17:53:45] 2025-06-03 21:53:31,433 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 17:53:45] 2025-06-03 21:53:31,433 | INFO     | pilot state: finished 
[2025-06-03 17:53:45] 2025-06-03 21:53:31,434 | INFO     | transexitcode: 0
[2025-06-03 17:53:45] 2025-06-03 21:53:31,434 | INFO     | exeerrorcode: 0
[2025-06-03 17:53:45] 2025-06-03 21:53:31,434 | INFO     | exeerrordiag: 
[2025-06-03 17:53:45] 2025-06-03 21:53:31,434 | INFO     | exitcode: 0
[2025-06-03 17:53:45] 2025-06-03 21:53:31,434 | INFO     | exitmsg: OK
[2025-06-03 17:53:45] 2025-06-03 21:53:31,435 | INFO     | cpuconsumptiontime: 51178 s
[2025-06-03 17:53:45] 2025-06-03 21:53:31,435 | INFO     | nevents: 400
[2025-06-03 17:53:45] 2025-06-03 21:53:31,435 | INFO     | neventsw: 0
[2025-06-03 17:53:45] 2025-06-03 21:53:31,435 | INFO     | pid: 20209
[2025-06-03 17:53:45] 2025-06-03 21:53:31,435 | INFO     | pgrp: 20209
[2025-06-03 17:53:45] 2025-06-03 21:53:31,435 | INFO     | corecount: 4
[2025-06-03 17:53:45] 2025-06-03 21:53:31,436 | INFO     | event service: False
[2025-06-03 17:53:45] 2025-06-03 21:53:31,436 | INFO     | sizes: {0: 2405013, 1: 2405212, 5: 2405418, 11: 2405474, 13245: 2435432, 13246: 2435431, 13249: 2444612, 13256: 2444726}
[2025-06-03 17:53:45] 2025-06-03 21:53:31,436 | INFO     | --------------------------------------------------
[2025-06-03 17:53:45] 2025-06-03 21:53:31,436 | INFO     | 
[2025-06-03 17:53:45] 2025-06-03 21:53:31,436 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 17:53:45] 2025-06-03 21:53:31,467 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,467 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,467 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,470 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 17:53:45] 2025-06-03 21:53:31,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,471 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 17:53:45] 2025-06-03 21:53:31,471 | INFO     | job 6677621700 has completed (purged errors)
[2025-06-03 17:53:45] 2025-06-03 21:53:31,471 | INFO     | overall cleanup function is called
[2025-06-03 17:53:45] 2025-06-03 21:53:32,479 | INFO     | --- collectZombieJob: --- 10, [20209]
[2025-06-03 17:53:45] 2025-06-03 21:53:32,479 | INFO     | zombie collector waiting for pid 20209
[2025-06-03 17:53:45] 2025-06-03 21:53:32,480 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 17:53:45] 2025-06-03 21:53:32,480 | INFO     | collected zombie processes
[2025-06-03 17:53:45] 2025-06-03 21:53:32,480 | INFO     | will attempt to kill all subprocesses of pid=20209
[2025-06-03 17:53:45] 2025-06-03 21:53:32,567 | INFO     | process IDs to be killed: [20209] (in reverse order)
[2025-06-03 17:53:45] 2025-06-03 21:53:32,625 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 17:53:45] 2025-06-03 21:53:32,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 17:53:45] 2025-06-03 21:53:32,629 | INFO     | did not find any defunct processes belonging to 20209
[2025-06-03 17:53:45] 2025-06-03 21:53:32,633 | INFO     | did not find any defunct processes belonging to 20209
[2025-06-03 17:53:45] 2025-06-03 21:53:32,633 | INFO     | ready for new job
[2025-06-03 17:53:45] 2025-06-03 21:53:32,634 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 17:53:45] 2025-06-03 21:53:32,636 | INFO     | **************************************
[2025-06-03 17:53:45] 2025-06-03 21:53:32,636 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 17:53:45] 2025-06-03 21:53:32,636 | INFO     | **************************************
[2025-06-03 17:53:45] 2025-06-03 21:53:32,636 | INFO     | 
[2025-06-03 17:53:45] 2025-06-03 21:53:32,637 | INFO     | architecture information:
[2025-06-03 17:53:45] 2025-06-03 21:53:32,637 | INFO     | executing command: cat /etc/os-release
[2025-06-03 17:53:45] 2025-06-03 21:53:32,655 | INFO     | cat /etc/os-release:
[2025-06-03 17:53:45] NAME="CentOS Linux"
[2025-06-03 17:53:45] VERSION="7 (Core)"
[2025-06-03 17:53:45] ID="centos"
[2025-06-03 17:53:45] ID_LIKE="rhel fedora"
[2025-06-03 17:53:45] VERSION_ID="7"
[2025-06-03 17:53:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 17:53:45] ANSI_COLOR="0;31"
[2025-06-03 17:53:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 17:53:45] HOME_URL="https://www.centos.org/"
[2025-06-03 17:53:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 17:53:45] 
[2025-06-03 17:53:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 17:53:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 17:53:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 17:53:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 17:53:45] 
[2025-06-03 17:53:45] 2025-06-03 21:53:32,656 | INFO     | **************************************
[2025-06-03 17:53:45] 2025-06-03 21:53:33,159 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 17:53:45] 2025-06-03 21:53:33,181 | INFO     | sufficient remaining disk space (18634244096 B)
[2025-06-03 17:53:45] 2025-06-03 21:53:33,182 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 17:53:45] 2025-06-03 21:53:33,182 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 17:53:45] 2025-06-03 21:53:33,182 | INFO     | update_server=False
[2025-06-03 17:53:45] 2025-06-03 21:53:33,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 17:53:45] 2025-06-03 21:53:33,183 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 17:53:45] 2025-06-03 21:53:33,183 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 17:53:45] 2025-06-03 21:53:33,183 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 17:53:45] 2025-06-03 21:53:33,183 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 17:53:45] 2025-06-03 21:53:33,269 | INFO     | all payload control threads have been joined
[2025-06-03 17:53:45] 2025-06-03 21:53:33,958 | INFO     | all data control threads have been joined
[2025-06-03 17:53:45] 2025-06-03 21:53:34,114 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:53:45] 2025-06-03 21:53:34,114 | INFO     | aborting loop
[2025-06-03 17:53:45] 2025-06-03 21:53:34,187 | INFO     | [job] retrieve thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:34,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 17:53:45] 2025-06-03 21:53:34,274 | INFO     | [payload] control thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:34,315 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 17:53:45] 2025-06-03 21:53:34,380 | INFO     | [payload] validate_post thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:34,391 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:34,538 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:34,558 | INFO     | all job control threads have been joined
[2025-06-03 17:53:45] 2025-06-03 21:53:34,710 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:34,959 | INFO     | [data] control thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:35,115 | INFO     | [job] job monitor thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:35,197 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:35,241 | INFO     | [job] validate thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:35,248 | INFO     | [data] copytool_in thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:35,564 | INFO     | [job] control thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:35,643 | INFO     | [payload] failed_post thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:36,089 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:53:45] 2025-06-03 21:53:36,228 | INFO     | [data] copytool_out thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:37,090 | INFO     | [job] queue monitor thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:38,321 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 17:53:45] 2025-06-03 21:53:39,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139831092852544)>', '<ExcThread(monitor, started 139830411376384)>']
[2025-06-03 17:53:45] 2025-06-03 21:53:40,217 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 17:53:45] 2025-06-03 21:53:40,217 | INFO     | [monitor] control thread has ended
[2025-06-03 17:53:45] 2025-06-03 21:53:44,600 | INFO     | all workflow threads have been joined
[2025-06-03 17:53:45] 2025-06-03 21:53:44,600 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 17:53:45] 2025-06-03 21:53:44,608 | INFO     | traces error code: 0
[2025-06-03 17:53:45] 2025-06-03 21:53:44,608 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 17:53:45] 2025-06-03 21:53:44,716 [wrapper] ==== pilot stdout END ====
[2025-06-03 17:53:45] 2025-06-03 21:53:44,721 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 17:53:45] 2025-06-03 21:53:44,725 [wrapper] pilotpid: 13783
[2025-06-03 17:53:45] 2025-06-03 21:53:44,730 [wrapper] Pilot exit status: 0
[2025-06-03 17:53:45] 2025-06-03 21:53:44,748 [wrapper] pandaids: 6677621700 6677621700
[2025-06-03 17:53:45] 2025-06-03 21:53:44,789 [wrapper] cleanup supervisor_pilot 18061 13784
[2025-06-03 17:53:45] 2025-06-03 21:53:44,795 [wrapper] Test setup, not cleaning
[2025-06-03 17:53:45] 2025-06-03 21:53:44,799 [wrapper] apfmon messages muted
[2025-06-03 17:53:45] 2025-06-03 21:53:44,804 [wrapper] ==== wrapper stdout END ====
[2025-06-03 17:53:45] 2025-06-03 21:53:44,808 [wrapper] ==== wrapper stderr END ====
[2025-06-03 17:53:45]  *** Error codes and diagnostics ***
[2025-06-03 17:53:45]     "exeErrorCode": 0,
[2025-06-03 17:53:45]     "exeErrorDiag": "",
[2025-06-03 17:53:45]     "pilotErrorCode": 0,
[2025-06-03 17:53:45]     "pilotErrorDiag": "",
[2025-06-03 17:53:45]  *** Listing of results directory ***
[2025-06-03 17:53:45] total 611484
[2025-06-03 17:53:45] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 08:59 pilot3.tar.gz
[2025-06-03 17:53:45] -rwx------ 1 boincer umatlas     37140 Jun  3 09:25 runpilot2-wrapper.sh
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 09:25 queuedata.json
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas       100 Jun  3 12:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 17:53:45] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 12:03 run_atlas
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas       105 Jun  3 12:03 job.xml
[2025-06-03 17:53:45] -rw-r--r-- 3 boincer umatlas 215304294 Jun  3 12:03 EVNT.45006593._001360.pool.root.1
[2025-06-03 17:53:45] -rw-r--r-- 3 boincer umatlas 215304294 Jun  3 12:03 ATLAS.root_0
[2025-06-03 17:53:45] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 12:03 start_atlas.sh
[2025-06-03 17:53:45] drwxrwx--x 2 boincer umatlas      4096 Jun  3 12:03 shared
[2025-06-03 17:53:45] -rw-r--r-- 2 boincer umatlas    508884 Jun  3 12:03 input.tar.gz
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas         0 Jun  3 12:03 boinc_lockfile
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 14:12 pandaJob.out
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas    985078 Jun  3 14:12 agis_schedconf.cvmfs.json
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas      5825 Jun  3 17:48 init_data.xml
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas 188660641 Jun  3 17:52 HITS.45006595._033806.pool.root.1
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas        96 Jun  3 17:52 pilot_heartbeat.json
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas       530 Jun  3 17:53 boinc_task_state.xml
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas      1058 Jun  3 17:53 memory_monitor_summary.json
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas   1603667 Jun  3 17:53 agis_ddmendpoints.agis.ALL.json
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas    331242 Jun  3 17:53 log.45006595._033806.job.log.tgz.1
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas      7751 Jun  3 17:53 heartbeat.json
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 17:53 boinc_mmap_file
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas        28 Jun  3 17:53 wrapper_checkpoint.txt
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas      4476 Jun  3 17:53 pilotlog.txt
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas   1198862 Jun  3 17:53 log.45006595._033806.job.log.1
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas       357 Jun  3 17:53 output.list
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas       620 Jun  3 17:53 runtime_log
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas   1546240 Jun  3 17:53 result.tar.gz
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas       788 Jun  3 17:53 V0tKDmBpgg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOLkKDmNDTCJm.diag
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas      8745 Jun  3 17:53 runtime_log.err
[2025-06-03 17:53:45] -rw-r--r-- 1 boincer umatlas     22978 Jun  3 17:53 stderr.txt
[2025-06-03 17:53:45] HITS file was successfully produced:
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas 188660641 Jun  3 17:52 shared/HITS.pool.root.1
[2025-06-03 17:53:45]  *** Contents of shared directory: ***
[2025-06-03 17:53:45] total 396532
[2025-06-03 17:53:45] -rw-r--r-- 3 boincer umatlas 215304294 Jun  3 12:03 ATLAS.root_0
[2025-06-03 17:53:45] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 12:03 start_atlas.sh
[2025-06-03 17:53:45] -rw-r--r-- 2 boincer umatlas    508884 Jun  3 12:03 input.tar.gz
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas 188660641 Jun  3 17:52 HITS.pool.root.1
[2025-06-03 17:53:45] -rw------- 1 boincer umatlas   1546240 Jun  3 17:53 result.tar.gz
17:53:46 (9893): run_atlas exited; CPU time 50897.984634
17:53:46 (9893): called boinc_finish(0)

</stderr_txt>
]]>

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