Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:52:53 (1197091): wrapper (7.7.26015): starting
11:52:53 (1197091): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:52:53] Arguments: --nthreads 8
[2025-06-03 11:52:53] Threads: 8
[2025-06-03 11:52:53] Checking for CVMFS
[2025-06-03 11:52:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:52:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:52:53] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:52:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:52:53] 2.12.6.0 814677 89407 878776 146748 2 197 17138486 21551104 3606 16776704 1 293403994 99.329 535868328 27516 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 11:52:53] CVMFS is ok
[2025-06-03 11:52:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 11:52:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 11:52:53] Further information can be found at the LHC@home message board.
[2025-06-03 11:52:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:52:53] Checking for apptainer binary...
[2025-06-03 11:52:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:52:53] Running /usr/bin/apptainer --version
[2025-06-03 11:52:53] apptainer version 1.4.1-1.el9
[2025-06-03 11:52:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:52:53] c-16-30.aglt2.org
[2025-06-03 11:52:53] apptainer works
[2025-06-03 11:52:53] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:52:53] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:52:53] Starting ATLAS job with PandaID=6677621491
[2025-06-03 11:52:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/condor/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 14:44:10]  *** The last 200 lines of the pilot log: ***
[2025-06-03 14:44:10] 2025-06-03 18:43:47,505 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 14:44:10] 2025-06-03 18:43:47,506 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 14:44:10] 2025-06-03 18:43:47,506 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 14:44:10] 2025-06-03 18:43:47,511 | INFO     | fitting pss+swap vs Time
[2025-06-03 14:44:10] 2025-06-03 18:43:47,511 | INFO     | sum of square deviations: 1470248962.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,512 | INFO     | sum of deviations: 52042917380.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,512 | INFO     | mean x: 1748971103.5
[2025-06-03 14:44:10] 2025-06-03 18:43:47,513 | INFO     | mean y: 2044619.75
[2025-06-03 14:44:10] 2025-06-03 18:43:47,513 | INFO     | -- intersect: -61906898009.69424
[2025-06-03 14:44:10] 2025-06-03 18:43:47,513 | INFO     | intersect: -61906898009.69424
[2025-06-03 14:44:10] 2025-06-03 18:43:47,513 | INFO     | chi2: 4.65800623133647
[2025-06-03 14:44:10] 2025-06-03 18:43:47,513 | INFO     | sum of square deviations: 1342841922.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,514 | INFO     | sum of deviations: 61130472656.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,514 | INFO     | mean x: 1748970951.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,514 | INFO     | mean y: 2055238.3312883435
[2025-06-03 14:44:10] 2025-06-03 18:43:47,514 | INFO     | -- intersect: -79616713839.8684
[2025-06-03 14:44:10] 2025-06-03 18:43:47,514 | INFO     | intersect: -79616713839.8684
[2025-06-03 14:44:10] 2025-06-03 18:43:47,515 | INFO     | chi2: 3.8886221280165736
[2025-06-03 14:44:10] 2025-06-03 18:43:47,515 | INFO     | current chi2=3.8886221280165736 (change=16.517455432839682 %)
[2025-06-03 14:44:10] 2025-06-03 18:43:47,515 | INFO     | right removable region: 162
[2025-06-03 14:44:10] 2025-06-03 18:43:47,515 | INFO     | sum of square deviations: 1342841922.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,516 | INFO     | sum of deviations: 16063091326.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,516 | INFO     | mean x: 1748971256.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,516 | INFO     | mean y: 2087554.680981595
[2025-06-03 14:44:10] 2025-06-03 18:43:47,516 | INFO     | -- intersect: -20919127780.80281
[2025-06-03 14:44:10] 2025-06-03 18:43:47,516 | INFO     | intersect: -20919127780.80281
[2025-06-03 14:44:10] 2025-06-03 18:43:47,516 | INFO     | chi2: 2.0290101821938697
[2025-06-03 14:44:10] 2025-06-03 18:43:47,517 | INFO     | current chi2=2.0290101821938697 (change=56.44037209431323 %)
[2025-06-03 14:44:10] 2025-06-03 18:43:47,517 | INFO     | sum of square deviations: 1223016419.5
[2025-06-03 14:44:10] 2025-06-03 18:43:47,517 | INFO     | sum of deviations: -7240677826.500002
[2025-06-03 14:44:10] 2025-06-03 18:43:47,518 | INFO     | mean x: 1748971408.5
[2025-06-03 14:44:10] 2025-06-03 18:43:47,518 | INFO     | mean y: 2117143.4620253164
[2025-06-03 14:44:10] 2025-06-03 18:43:47,518 | INFO     | -- intersect: 10356629392.68079
[2025-06-03 14:44:10] 2025-06-03 18:43:47,518 | INFO     | intersect: 10356629392.68079
[2025-06-03 14:44:10] 2025-06-03 18:43:47,518 | INFO     | chi2: 0.9679535564307458
[2025-06-03 14:44:10] 2025-06-03 18:43:47,518 | INFO     | current chi2=0.9679535564307458 (change=52.29429773565035 %)
[2025-06-03 14:44:10] 2025-06-03 18:43:47,518 | INFO     | sum of square deviations: 1110539892.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,519 | INFO     | sum of deviations: -12828972708.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,519 | INFO     | mean x: 1748971561.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,519 | INFO     | mean y: 2124645.633986928
[2025-06-03 14:44:10] 2025-06-03 18:43:47,519 | INFO     | -- intersect: 20206269120.560383
[2025-06-03 14:44:10] 2025-06-03 18:43:47,519 | INFO     | intersect: 20206269120.560383
[2025-06-03 14:44:10] 2025-06-03 18:43:47,520 | INFO     | chi2: 0.8736680711552408
[2025-06-03 14:44:10] 2025-06-03 18:43:47,520 | INFO     | current chi2=0.8736680711552408 (change=9.740703430356248 %)
[2025-06-03 14:44:10] 2025-06-03 18:43:47,520 | INFO     | left removable region: 30
[2025-06-03 14:44:10] 2025-06-03 18:43:47,520 | INFO     | sum of square deviations: 713140813.0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,521 | INFO     | sum of deviations: -898275111.5000005
[2025-06-03 14:44:10] 2025-06-03 18:43:47,521 | INFO     | mean x: 1748971835.5
[2025-06-03 14:44:10] 2025-06-03 18:43:47,521 | INFO     | mean y: 2137222.962121212
[2025-06-03 14:44:10] 2025-06-03 18:43:47,521 | INFO     | -- intersect: 2205149365.7324758
[2025-06-03 14:44:10] 2025-06-03 18:43:47,521 | INFO     | intersect: 2205149365.7324758
[2025-06-03 14:44:10] 2025-06-03 18:43:47,521 | INFO     | chi2: 0.0699323620517328
[2025-06-03 14:44:10] 2025-06-03 18:43:47,521 | INFO     | -- intersect: 2205149365.7324758
[2025-06-03 14:44:10] 2025-06-03 18:43:47,521 | INFO     | current memory leak: -1.26 B/s (using 132 data points, chi2=0.07)
[2025-06-03 14:44:10] 2025-06-03 18:43:47,522 | INFO     | ..............................
[2025-06-03 14:44:10] 2025-06-03 18:43:47,522 | INFO     | . Timing measurements:
[2025-06-03 14:44:10] 2025-06-03 18:43:47,522 | INFO     | . get job = 0 s
[2025-06-03 14:44:10] 2025-06-03 18:43:47,522 | INFO     | . initial setup = 2 s
[2025-06-03 14:44:10] 2025-06-03 18:43:47,522 | INFO     | . payload setup = 6 s
[2025-06-03 14:44:10] 2025-06-03 18:43:47,522 | INFO     | . stage-in = 0 s
[2025-06-03 14:44:10] 2025-06-03 18:43:47,522 | INFO     | . payload execution = 10203 s
[2025-06-03 14:44:10] 2025-06-03 18:43:47,522 | INFO     | . stage-out = 1 s
[2025-06-03 14:44:10] 2025-06-03 18:43:47,523 | INFO     | . log creation = 0 s
[2025-06-03 14:44:10] 2025-06-03 18:43:47,523 | INFO     | ..............................
[2025-06-03 14:44:10] 2025-06-03 18:43:47,742 | INFO     | 
[2025-06-03 14:44:10] 2025-06-03 18:43:47,742 | INFO     | job summary report
[2025-06-03 14:44:10] 2025-06-03 18:43:47,742 | INFO     | --------------------------------------------------
[2025-06-03 14:44:10] 2025-06-03 18:43:47,743 | INFO     | PanDA job id: 6677621491
[2025-06-03 14:44:10] 2025-06-03 18:43:47,743 | INFO     | task id: 45006595
[2025-06-03 14:44:10] 2025-06-03 18:43:47,743 | INFO     | errors: (none)
[2025-06-03 14:44:10] 2025-06-03 18:43:47,743 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 14:44:10] 2025-06-03 18:43:47,743 | INFO     | pilot state: finished 
[2025-06-03 14:44:10] 2025-06-03 18:43:47,743 | INFO     | transexitcode: 0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,743 | INFO     | exeerrorcode: 0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,744 | INFO     | exeerrordiag: 
[2025-06-03 14:44:10] 2025-06-03 18:43:47,744 | INFO     | exitcode: 0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,744 | INFO     | exitmsg: OK
[2025-06-03 14:44:10] 2025-06-03 18:43:47,744 | INFO     | cpuconsumptiontime: 67049 s
[2025-06-03 14:44:10] 2025-06-03 18:43:47,744 | INFO     | nevents: 400
[2025-06-03 14:44:10] 2025-06-03 18:43:47,744 | INFO     | neventsw: 0
[2025-06-03 14:44:10] 2025-06-03 18:43:47,744 | INFO     | pid: 1207558
[2025-06-03 14:44:10] 2025-06-03 18:43:47,744 | INFO     | pgrp: 1207558
[2025-06-03 14:44:10] 2025-06-03 18:43:47,745 | INFO     | corecount: 8
[2025-06-03 14:44:10] 2025-06-03 18:43:47,745 | INFO     | event service: False
[2025-06-03 14:44:10] 2025-06-03 18:43:47,745 | INFO     | sizes: {0: 2405024, 1: 2405223, 5: 2405429, 12: 2405485, 10214: 2434026, 10216: 2442989, 10219: 2443173, 10228: 2443343}
[2025-06-03 14:44:10] 2025-06-03 18:43:47,745 | INFO     | --------------------------------------------------
[2025-06-03 14:44:10] 2025-06-03 18:43:47,745 | INFO     | 
[2025-06-03 14:44:10] 2025-06-03 18:43:47,746 | INFO     | executing command: ls -lF /var/lib/condor/boinchome/slots/4
[2025-06-03 14:44:10] 2025-06-03 18:43:47,773 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,774 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,774 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,774 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,774 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,774 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,774 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,775 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,775 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,775 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,775 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,776 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,776 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 14:44:10] 2025-06-03 18:43:47,776 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,777 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 14:44:10] 2025-06-03 18:43:47,777 | INFO     | job 6677621491 has completed (purged errors)
[2025-06-03 14:44:10] 2025-06-03 18:43:47,777 | INFO     | overall cleanup function is called
[2025-06-03 14:44:10] 2025-06-03 18:43:48,786 | INFO     | --- collectZombieJob: --- 10, [1207558]
[2025-06-03 14:44:10] 2025-06-03 18:43:48,786 | INFO     | zombie collector waiting for pid 1207558
[2025-06-03 14:44:10] 2025-06-03 18:43:48,786 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 14:44:10] 2025-06-03 18:43:48,787 | INFO     | collected zombie processes
[2025-06-03 14:44:10] 2025-06-03 18:43:48,787 | INFO     | will attempt to kill all subprocesses of pid=1207558
[2025-06-03 14:44:10] 2025-06-03 18:43:49,996 | INFO     | process IDs to be killed: [1207558] (in reverse order)
[2025-06-03 14:44:10] 2025-06-03 18:43:50,023 | INFO     | PID=1200680 has CPU usage=16.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-03 14:44:10] 2025-06-03 18:43:50,024 | INFO     | .. there are 20 such processes running
[2025-06-03 14:44:10] 2025-06-03 18:43:50,142 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 14:44:10] 2025-06-03 18:43:50,142 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 14:44:10] 2025-06-03 18:43:50,166 | INFO     | did not find any defunct processes belonging to 1207558
[2025-06-03 14:44:10] 2025-06-03 18:43:50,189 | INFO     | did not find any defunct processes belonging to 1207558
[2025-06-03 14:44:10] 2025-06-03 18:43:50,189 | INFO     | ready for new job
[2025-06-03 14:44:10] 2025-06-03 18:43:50,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 14:44:10] 2025-06-03 18:43:50,192 | INFO     | **************************************
[2025-06-03 14:44:10] 2025-06-03 18:43:50,192 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 14:44:10] 2025-06-03 18:43:50,192 | INFO     | **************************************
[2025-06-03 14:44:10] 2025-06-03 18:43:50,192 | INFO     | 
[2025-06-03 14:44:10] 2025-06-03 18:43:50,195 | INFO     | architecture information:
[2025-06-03 14:44:10] 2025-06-03 18:43:50,195 | INFO     | executing command: cat /etc/os-release
[2025-06-03 14:44:10] 2025-06-03 18:43:50,216 | INFO     | cat /etc/os-release:
[2025-06-03 14:44:10] NAME="CentOS Linux"
[2025-06-03 14:44:10] VERSION="7 (Core)"
[2025-06-03 14:44:10] ID="centos"
[2025-06-03 14:44:10] ID_LIKE="rhel fedora"
[2025-06-03 14:44:10] VERSION_ID="7"
[2025-06-03 14:44:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 14:44:10] ANSI_COLOR="0;31"
[2025-06-03 14:44:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 14:44:10] HOME_URL="https://www.centos.org/"
[2025-06-03 14:44:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 14:44:10] 
[2025-06-03 14:44:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 14:44:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 14:44:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 14:44:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 14:44:10] 
[2025-06-03 14:44:10] 2025-06-03 18:43:50,216 | INFO     | **************************************
[2025-06-03 14:44:10] 2025-06-03 18:43:50,719 | INFO     | executing command: df -mP /var/lib/condor/boinchome/slots/4
[2025-06-03 14:44:10] 2025-06-03 18:43:50,738 | INFO     | sufficient remaining disk space (1859368517632 B)
[2025-06-03 14:44:10] 2025-06-03 18:43:50,738 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 14:44:10] 2025-06-03 18:43:50,739 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 14:44:10] 2025-06-03 18:43:50,739 | INFO     | update_server=False
[2025-06-03 14:44:10] 2025-06-03 18:43:50,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 14:44:10] 2025-06-03 18:43:50,739 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 14:44:10] 2025-06-03 18:43:50,740 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 14:44:10] 2025-06-03 18:43:50,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 14:44:10] 2025-06-03 18:43:50,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 14:44:10] 2025-06-03 18:43:50,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:44:10] 2025-06-03 18:43:50,767 | INFO     | aborting loop
[2025-06-03 14:44:10] 2025-06-03 18:43:50,890 | INFO     | all data control threads have been joined
[2025-06-03 14:44:10] 2025-06-03 18:43:51,285 | INFO     | all payload control threads have been joined
[2025-06-03 14:44:10] 2025-06-03 18:43:51,376 | INFO     | all job control threads have been joined
[2025-06-03 14:44:10] 2025-06-03 18:43:51,745 | INFO     | [job] retrieve thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:51,774 | INFO     | [job] job monitor thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:51,876 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 14:44:10] 2025-06-03 18:43:51,896 | INFO     | [data] control thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:51,950 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:52,181 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:52,291 | INFO     | [payload] control thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:52,382 | INFO     | [job] control thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:52,546 | INFO     | [payload] failed_post thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:52,556 | INFO     | [payload] validate_post thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:52,730 | INFO     | [job] validate thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:52,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 14:44:10] 2025-06-03 18:43:52,769 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:52,950 | INFO     | [data] copytool_in thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:53,765 | INFO     | [job] queue monitor thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:53,883 | INFO     | [data] copytool_out thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:43:54,026 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 14:44:10] 2025-06-03 18:43:58,036 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:44:01,500 | INFO     | job.realtimelogging is not enabled
[2025-06-03 14:44:10] 2025-06-03 18:44:02,505 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 14:44:10] 2025-06-03 18:44:04,594 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140079812548416)>', '<ExcThread(monitor, started 140079326545664)>']
[2025-06-03 14:44:10] 2025-06-03 18:44:04,823 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 14:44:10] 2025-06-03 18:44:04,824 | INFO     | [monitor] control thread has ended
[2025-06-03 14:44:10] 2025-06-03 18:44:09,621 | INFO     | all workflow threads have been joined
[2025-06-03 14:44:10] 2025-06-03 18:44:09,621 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 14:44:10] 2025-06-03 18:44:09,621 | INFO     | traces error code: 0
[2025-06-03 14:44:10] 2025-06-03 18:44:09,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 14:44:10] 2025-06-03 18:44:09,902 [wrapper] ==== pilot stdout END ====
[2025-06-03 14:44:10] 2025-06-03 18:44:09,917 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 14:44:10] 2025-06-03 18:44:09,922 [wrapper] pilotpid: 1200680
[2025-06-03 14:44:10] 2025-06-03 18:44:09,926 [wrapper] Pilot exit status: 0
[2025-06-03 14:44:10] 2025-06-03 18:44:09,974 [wrapper] pandaids: 6677621491
[2025-06-03 14:44:10] 2025-06-03 18:44:10,102 [wrapper] cleanup supervisor_pilot 1777167 1200681
[2025-06-03 14:44:10] 2025-06-03 18:44:10,111 [wrapper] Test setup, not cleaning
[2025-06-03 14:44:10] 2025-06-03 18:44:10,114 [wrapper] apfmon messages muted
[2025-06-03 14:44:10] 2025-06-03 18:44:10,116 [wrapper] ==== wrapper stdout END ====
[2025-06-03 14:44:10] 2025-06-03 18:44:10,122 [wrapper] ==== wrapper stderr END ====
[2025-06-03 14:44:10]  *** Error codes and diagnostics ***
[2025-06-03 14:44:10]     "exeErrorCode": 0,
[2025-06-03 14:44:10]     "exeErrorDiag": "",
[2025-06-03 14:44:10]     "pilotErrorCode": 0,
[2025-06-03 14:44:10]     "pilotErrorDiag": "",
[2025-06-03 14:44:10]  *** Listing of results directory ***
[2025-06-03 14:44:10] total 395364
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 08:59 pilot3.tar.gz
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 09:16 queuedata.json
[2025-06-03 14:44:10] -rwx------. 1 boincer umatlas     37140 Jun  3 09:17 runpilot2-wrapper.sh
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas       100 Jun  3 11:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 14:44:10] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 11:52 run_atlas
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas       105 Jun  3 11:52 job.xml
[2025-06-03 14:44:10] -rw-r--r--. 2 boincer umatlas 216774173 Jun  3 11:52 EVNT.45006593._001352.pool.root.1
[2025-06-03 14:44:10] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 11:52 start_atlas.sh
[2025-06-03 14:44:10] drwxrwx--x. 2 boincer umatlas        68 Jun  3 11:52 shared
[2025-06-03 14:44:10] -rw-r--r--. 2 boincer umatlas    508880 Jun  3 11:52 input.tar.gz
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas         0 Jun  3 11:52 boinc_lockfile
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 11:52 pandaJob.out
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas    983735 Jun  3 11:53 agis_schedconf.cvmfs.json
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas   1603667 Jun  3 11:53 agis_ddmendpoints.agis.ALL.json
[2025-06-03 14:44:10] drwx------. 4 boincer umatlas      4096 Jun  3 11:53 pilot3
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas      6550 Jun  3 14:37 init_data.xml
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas 181643872 Jun  3 14:42 HITS.45006595._033597.pool.root.1
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas       529 Jun  3 14:43 boinc_task_state.xml
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas      1034 Jun  3 14:43 memory_monitor_summary.json
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas    350814 Jun  3 14:43 log.45006595._033597.job.log.tgz.1
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas        95 Jun  3 14:43 pilot_heartbeat.json
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas      7705 Jun  3 14:43 heartbeat.json
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 14:43 boinc_mmap_file
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas        27 Jun  3 14:43 wrapper_checkpoint.txt
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas      4561 Jun  3 14:44 pilotlog.txt
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas    955481 Jun  3 14:44 log.45006595._033597.job.log.1
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas       357 Jun  3 14:44 output.list
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas       620 Jun  3 14:44 runtime_log
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas   1320960 Jun  3 14:44 result.tar.gz
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas      8809 Jun  3 14:44 runtime_log.err
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas       654 Jun  3 14:44 nlfMDmChgg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeJkKDmczPCbm.diag
[2025-06-03 14:44:10] -rw-r--r--. 1 boincer umatlas     20933 Jun  3 14:44 stderr.txt
[2025-06-03 14:44:10] HITS file was successfully produced:
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas 181643872 Jun  3 14:42 shared/HITS.pool.root.1
[2025-06-03 14:44:10]  *** Contents of shared directory: ***
[2025-06-03 14:44:10] total 390896
[2025-06-03 14:44:10] -rw-r--r--. 2 boincer umatlas 216774173 Jun  3 11:52 ATLAS.root_0
[2025-06-03 14:44:10] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 11:52 start_atlas.sh
[2025-06-03 14:44:10] -rw-r--r--. 2 boincer umatlas    508880 Jun  3 11:52 input.tar.gz
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas 181643872 Jun  3 14:42 HITS.pool.root.1
[2025-06-03 14:44:10] -rw-------. 1 boincer umatlas   1320960 Jun  3 14:44 result.tar.gz
14:44:11 (1197091): run_atlas exited; CPU time 67450.574033
14:44:11 (1197091): called boinc_finish(0)

</stderr_txt>
]]>

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