Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:26:42 (13028): wrapper (7.7.26015): starting
03:26:42 (13028): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 03:26:42] Arguments: --nthreads 8
[2025-06-04 03:26:42] Threads: 8
[2025-06-04 03:26:42] Checking for CVMFS
[2025-06-04 03:26:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 03:26:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 03:26:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 03:26:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 03:26:43] 2.11.2.0 31726 32546 90304 146762 0 244 15553575 25165825 3642 130560 0 16767360 99.746 20485709 1982 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 03:26:43] CVMFS is ok
[2025-06-04 03:26:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 03:26:43] Checking for apptainer binary...
[2025-06-04 03:26:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 03:26:43] Running /usr/bin/apptainer --version
[2025-06-04 03:26:43] apptainer version 1.3.2-1.el7
[2025-06-04 03:26:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 03:26:44] cg-vwn427.simple-grid.lan
[2025-06-04 03:26:44] apptainer works
[2025-06-04 03:26:44] Set ATHENA_PROC_NUMBER=8
[2025-06-04 03:26:44] Set ATHENA_CORE_NUMBER=8
[2025-06-04 03:26:44] Starting ATLAS job with PandaID=6677619956
[2025-06-04 03:26:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:28:04]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:28:04] 2025-06-04 05:14:50,601 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6677619956/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 07:28:04] 2025-06-04 05:14:50,602 | INFO     | extracted standard info from prmon json
[2025-06-04 07:28:04] 2025-06-04 05:14:50,602 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:28:04] 2025-06-04 05:14:50,602 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:28:04] 2025-06-04 05:14:50,602 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:28:04] 2025-06-04 05:14:50,603 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:28:04] 2025-06-04 05:14:50,608 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:28:04] 2025-06-04 05:14:50,608 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 07:28:04] 2025-06-04 05:14:50,610 | INFO     | sum of deviations: 8086495164.499998
[2025-06-04 07:28:04] 2025-06-04 05:14:50,611 | INFO     | mean x: 1749007224.5
[2025-06-04 07:28:04] 2025-06-04 05:14:50,611 | INFO     | mean y: 2469571.1396396398
[2025-06-04 07:28:04] 2025-06-04 05:14:50,611 | INFO     | -- intersect: -4166448875.3406177
[2025-06-04 07:28:04] 2025-06-04 05:14:50,611 | INFO     | intersect: -4166448875.3406177
[2025-06-04 07:28:04] 2025-06-04 05:14:50,611 | INFO     | chi2: 2.6883054030054723
[2025-06-04 07:28:04] 2025-06-04 05:14:50,612 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,614 | INFO     | sum of deviations: 22336473761.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,614 | INFO     | mean x: 1749007072.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,614 | INFO     | mean y: 2479086.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,614 | INFO     | -- intersect: -12327370411.005573
[2025-06-04 07:28:04] 2025-06-04 05:14:50,614 | INFO     | intersect: -12327370411.005573
[2025-06-04 07:28:04] 2025-06-04 05:14:50,615 | INFO     | chi2: 1.9227255795414941
[2025-06-04 07:28:04] 2025-06-04 05:14:50,615 | INFO     | current chi2=1.9227255795414941 (change=28.478156633843575 %)
[2025-06-04 07:28:04] 2025-06-04 05:14:50,615 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,617 | INFO     | sum of deviations: 21695433087.5
[2025-06-04 07:28:04] 2025-06-04 05:14:50,617 | INFO     | mean x: 1749006919.5
[2025-06-04 07:28:04] 2025-06-04 05:14:50,617 | INFO     | mean y: 2478629.1745283017
[2025-06-04 07:28:04] 2025-06-04 05:14:50,617 | INFO     | -- intersect: -12841024859.541946
[2025-06-04 07:28:04] 2025-06-04 05:14:50,617 | INFO     | intersect: -12841024859.541946
[2025-06-04 07:28:04] 2025-06-04 05:14:50,618 | INFO     | chi2: 1.9240060539263981
[2025-06-04 07:28:04] 2025-06-04 05:14:50,618 | INFO     | current chi2=1.9240060539263981 (change=-0.06659683516611475 %)
[2025-06-04 07:28:04] 2025-06-04 05:14:50,618 | INFO     | right removable region: 211
[2025-06-04 07:28:04] 2025-06-04 05:14:50,619 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,620 | INFO     | sum of deviations: -32810536772.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,621 | INFO     | mean x: 1749007377.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,621 | INFO     | mean y: 2497179.718894009
[2025-06-04 07:28:04] 2025-06-04 05:14:50,621 | INFO     | -- intersect: 18114087003.185776
[2025-06-04 07:28:04] 2025-06-04 05:14:50,621 | INFO     | intersect: 18114087003.185776
[2025-06-04 07:28:04] 2025-06-04 05:14:50,621 | INFO     | chi2: 0.9307448409309123
[2025-06-04 07:28:04] 2025-06-04 05:14:50,621 | INFO     | current chi2=0.9307448409309123 (change=65.37800951148043 %)
[2025-06-04 07:28:04] 2025-06-04 05:14:50,622 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,624 | INFO     | sum of deviations: -29962822471.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,624 | INFO     | mean x: 1749007529.5
[2025-06-04 07:28:04] 2025-06-04 05:14:50,624 | INFO     | mean y: 2495111.783018868
[2025-06-04 07:28:04] 2025-06-04 05:14:50,624 | INFO     | -- intersect: 17740225794.646328
[2025-06-04 07:28:04] 2025-06-04 05:14:50,624 | INFO     | intersect: 17740225794.646328
[2025-06-04 07:28:04] 2025-06-04 05:14:50,625 | INFO     | chi2: 0.9147444460100527
[2025-06-04 07:28:04] 2025-06-04 05:14:50,625 | INFO     | current chi2=0.9147444460100527 (change=1.719095741090148 %)
[2025-06-04 07:28:04] 2025-06-04 05:14:50,625 | INFO     | left removable region: 20
[2025-06-04 07:28:04] 2025-06-04 05:14:50,625 | INFO     | sum of square deviations: 2160561440.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,627 | INFO     | sum of deviations: -149570718.99999923
[2025-06-04 07:28:04] 2025-06-04 05:14:50,627 | INFO     | mean x: 1749007499.0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,627 | INFO     | mean y: 2493012.623036649
[2025-06-04 07:28:04] 2025-06-04 05:14:50,627 | INFO     | -- intersect: 123572795.09005153
[2025-06-04 07:28:04] 2025-06-04 05:14:50,627 | INFO     | intersect: 123572795.09005153
[2025-06-04 07:28:04] 2025-06-04 05:14:50,628 | INFO     | chi2: 0.03817791945088889
[2025-06-04 07:28:04] 2025-06-04 05:14:50,628 | INFO     | -- intersect: 123572795.09005153
[2025-06-04 07:28:04] 2025-06-04 05:14:50,628 | INFO     | current memory leak: -0.07 B/s (using 191 data points, chi2=0.04)
[2025-06-04 07:28:04] 2025-06-04 05:14:50,629 | INFO     | ..............................
[2025-06-04 07:28:04] 2025-06-04 05:14:50,629 | INFO     | . Timing measurements:
[2025-06-04 07:28:04] 2025-06-04 05:14:50,629 | INFO     | . get job = 0 s
[2025-06-04 07:28:04] 2025-06-04 05:14:50,629 | INFO     | . initial setup = 3 s
[2025-06-04 07:28:04] 2025-06-04 05:14:50,629 | INFO     | . payload setup = 14 s
[2025-06-04 07:28:04] 2025-06-04 05:14:50,629 | INFO     | . stage-in = 0 s
[2025-06-04 07:28:04] 2025-06-04 05:14:50,629 | INFO     | . payload execution = 13529 s
[2025-06-04 07:28:04] 2025-06-04 05:14:50,629 | INFO     | . stage-out = 3 s
[2025-06-04 07:28:04] 2025-06-04 05:14:50,630 | INFO     | . log creation = 1 s
[2025-06-04 07:28:04] 2025-06-04 05:14:50,630 | INFO     | ..............................
[2025-06-04 07:28:04] 2025-06-04 05:14:50,793 | INFO     | 
[2025-06-04 07:28:04] 2025-06-04 05:14:50,794 | INFO     | job summary report
[2025-06-04 07:28:04] 2025-06-04 05:14:50,794 | INFO     | --------------------------------------------------
[2025-06-04 07:28:04] 2025-06-04 05:14:50,794 | INFO     | PanDA job id: 6677619956
[2025-06-04 07:28:04] 2025-06-04 05:14:50,794 | INFO     | task id: 45006595
[2025-06-04 07:28:04] 2025-06-04 05:14:50,794 | INFO     | errors: (none)
[2025-06-04 07:28:04] 2025-06-04 05:14:50,794 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:28:04] 2025-06-04 05:14:50,794 | INFO     | pilot state: finished 
[2025-06-04 07:28:04] 2025-06-04 05:14:50,794 | INFO     | transexitcode: 0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,795 | INFO     | exeerrorcode: 0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,795 | INFO     | exeerrordiag: 
[2025-06-04 07:28:04] 2025-06-04 05:14:50,795 | INFO     | exitcode: 0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,795 | INFO     | exitmsg: OK
[2025-06-04 07:28:04] 2025-06-04 05:14:50,795 | INFO     | cpuconsumptiontime: 49534 s
[2025-06-04 07:28:04] 2025-06-04 05:14:50,795 | INFO     | nevents: 400
[2025-06-04 07:28:04] 2025-06-04 05:14:50,795 | INFO     | neventsw: 0
[2025-06-04 07:28:04] 2025-06-04 05:14:50,795 | INFO     | pid: 23393
[2025-06-04 07:28:04] 2025-06-04 05:14:50,795 | INFO     | pgrp: 23393
[2025-06-04 07:28:04] 2025-06-04 05:14:50,795 | INFO     | corecount: 8
[2025-06-04 07:28:04] 2025-06-04 05:14:50,795 | INFO     | event service: False
[2025-06-04 07:28:04] 2025-06-04 05:14:50,796 | INFO     | sizes: {0: 2405014, 1: 2405213, 9: 2405419, 12: 2405447, 13548: 2435076, 13549: 2435103, 13554: 2444230, 13555: 2444286, 13647: 2444456}
[2025-06-04 07:28:04] 2025-06-04 05:14:50,796 | INFO     | --------------------------------------------------
[2025-06-04 07:28:04] 2025-06-04 05:14:50,796 | INFO     | 
[2025-06-04 07:28:04] 2025-06-04 05:14:50,796 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-06-04 07:28:04] 2025-06-04 05:14:51,258 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,258 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,258 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,259 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,259 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,259 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,259 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,259 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,259 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,259 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,259 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,260 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,260 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,260 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,260 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,260 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,260 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,260 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:28:04] 2025-06-04 05:14:51,260 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,260 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:28:04] 2025-06-04 05:14:51,261 | INFO     | job 6677619956 has completed (purged errors)
[2025-06-04 07:28:04] 2025-06-04 05:14:51,261 | INFO     | overall cleanup function is called
[2025-06-04 07:28:04] 2025-06-04 05:14:52,277 | INFO     | --- collectZombieJob: --- 10, [23393]
[2025-06-04 07:28:04] 2025-06-04 05:14:52,278 | INFO     | zombie collector waiting for pid 23393
[2025-06-04 07:28:04] 2025-06-04 05:14:52,278 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:28:04] 2025-06-04 05:14:52,278 | INFO     | collected zombie processes
[2025-06-04 07:28:04] 2025-06-04 05:14:52,278 | INFO     | will attempt to kill all subprocesses of pid=23393
[2025-06-04 07:28:04] 2025-06-04 05:14:52,405 | INFO     | process IDs to be killed: [23393] (in reverse order)
[2025-06-04 07:28:04] 2025-06-04 05:14:53,065 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:28:04] 2025-06-04 05:14:53,066 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:28:04] 2025-06-04 05:14:53,069 | INFO     | did not find any defunct processes belonging to 23393
[2025-06-04 07:28:04] 2025-06-04 05:14:53,072 | INFO     | did not find any defunct processes belonging to 23393
[2025-06-04 07:28:04] 2025-06-04 05:14:53,073 | INFO     | ready for new job
[2025-06-04 07:28:04] 2025-06-04 05:14:53,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:28:04] 2025-06-04 05:14:53,075 | INFO     | **************************************
[2025-06-04 07:28:04] 2025-06-04 05:14:53,075 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:28:04] 2025-06-04 05:14:53,075 | INFO     | **************************************
[2025-06-04 07:28:04] 2025-06-04 05:14:53,075 | INFO     | 
[2025-06-04 07:28:04] 2025-06-04 05:14:53,076 | INFO     | pilot is running in a VM
[2025-06-04 07:28:04] 2025-06-04 05:14:53,076 | INFO     | architecture information:
[2025-06-04 07:28:04] 2025-06-04 05:14:53,088 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:28:04] 2025-06-04 05:14:53,231 | INFO     | cat /etc/os-release:
[2025-06-04 07:28:04] NAME="CentOS Linux"
[2025-06-04 07:28:04] VERSION="7 (Core)"
[2025-06-04 07:28:04] ID="centos"
[2025-06-04 07:28:04] ID_LIKE="rhel fedora"
[2025-06-04 07:28:04] VERSION_ID="7"
[2025-06-04 07:28:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:28:04] ANSI_COLOR="0;31"
[2025-06-04 07:28:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:28:04] HOME_URL="https://www.centos.org/"
[2025-06-04 07:28:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:28:04] 
[2025-06-04 07:28:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:28:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:28:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:28:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:28:04] 
[2025-06-04 07:28:04] 2025-06-04 05:14:53,231 | INFO     | **************************************
[2025-06-04 07:28:04] 2025-06-04 05:14:53,734 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-06-04 07:28:04] 2025-06-04 05:14:53,996 | INFO     | sufficient remaining disk space (496560504832 B)
[2025-06-04 07:28:04] 2025-06-04 05:14:53,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:28:04] 2025-06-04 05:14:53,997 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:28:04] 2025-06-04 05:14:53,997 | INFO     | update_server=False
[2025-06-04 07:28:04] 2025-06-04 05:14:53,997 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:28:04] 2025-06-04 05:14:54,007 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:28:04] 2025-06-04 05:14:54,007 | INFO     | aborting loop
[2025-06-04 07:28:04] 2025-06-04 05:14:54,009 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:28:04] 2025-06-04 05:14:54,386 | INFO     | all data control threads have been joined
[2025-06-04 07:28:04] 2025-06-04 05:14:54,571 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:28:04] 2025-06-04 05:14:54,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:28:04] 2025-06-04 05:14:54,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:28:04] 2025-06-04 05:14:54,778 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:28:04] 2025-06-04 05:14:54,824 | INFO     | all job control threads have been joined
[2025-06-04 07:28:04] 2025-06-04 05:14:54,915 | INFO     | all payload control threads have been joined
[2025-06-04 07:28:04] 2025-06-04 05:14:55,012 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:55,013 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:55,203 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:55,341 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:55,392 | INFO     | [data] control thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:55,430 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:55,813 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:28:04] 2025-06-04 05:14:55,831 | INFO     | [job] control thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:55,922 | INFO     | [payload] control thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:56,017 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:56,029 | INFO     | [job] validate thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:56,191 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:56,221 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:56,295 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:56,500 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:56,820 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:58,788 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:28:04] 2025-06-04 05:14:59,931 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310146930496)>', '<ExcThread(monitor, started 140309702883072)>']
[2025-06-04 07:28:04] 2025-06-04 05:15:00,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:28:04] 2025-06-04 05:15:00,607 | INFO     | [monitor] control thread has ended
[2025-06-04 07:28:04] 2025-06-04 05:15:04,956 | INFO     | all workflow threads have been joined
[2025-06-04 07:28:04] 2025-06-04 05:15:04,957 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:28:04] 2025-06-04 05:15:04,957 | INFO     | traces error code: 0
[2025-06-04 07:28:04] 2025-06-04 05:15:04,957 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:28:04] 2025-06-04 05:15:05,294 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:28:04] 2025-06-04 05:15:05,388 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:28:04] 2025-06-04 05:15:05,430 [wrapper] pilotpid: 16707
[2025-06-04 07:28:04] 2025-06-04 05:15:05,463 [wrapper] Pilot exit status: 0
[2025-06-04 07:28:04] 2025-06-04 05:15:05,993 [wrapper] pandaids: 6677619956
[2025-06-04 07:28:04] 2025-06-04 05:15:06,803 [wrapper] cleanup supervisor_pilot  6346 16708
[2025-06-04 07:28:04] 2025-06-04 05:15:06,858 [wrapper] Test setup, not cleaning
[2025-06-04 07:28:04] 2025-06-04 05:15:06,915 [wrapper] apfmon messages muted
[2025-06-04 07:28:04] 2025-06-04 05:15:06,977 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:28:04] 2025-06-04 05:15:07,027 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:28:04]  *** Error codes and diagnostics ***
[2025-06-04 07:28:04]     "exeErrorCode": 0,
[2025-06-04 07:28:04]     "exeErrorDiag": "",
[2025-06-04 07:28:04]     "pilotErrorCode": 0,
[2025-06-04 07:28:04]     "pilotErrorDiag": "",
[2025-06-04 07:28:04]  *** Listing of results directory ***
[2025-06-04 07:28:04] total 387708
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc    495897 Jun  3 14:45 pilot3.tar.gz
[2025-06-04 07:28:04] -rwx------. 1 boinc boinc     37140 Jun  3 14:56 runpilot2-wrapper.sh
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc      5111 Jun  3 14:56 queuedata.json
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc       100 Jun  4 03:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:28:04] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 03:26 run_atlas
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc       105 Jun  4 03:26 job.xml
[2025-06-04 07:28:04] -rw-r--r--. 2 boinc boinc 214723746 Jun  4 03:26 EVNT.45006593._001329.pool.root.1
[2025-06-04 07:28:04] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:26 start_atlas.sh
[2025-06-04 07:28:04] drwxrwx--x. 2 boinc boinc        68 Jun  4 03:26 shared
[2025-06-04 07:28:04] -rw-r--r--. 2 boinc boinc    508883 Jun  4 03:26 input.tar.gz
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc      6392 Jun  4 03:26 init_data.xml
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc         0 Jun  4 03:26 boinc_lockfile
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc      2525 Jun  4 03:26 pandaJob.out
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc    986069 Jun  4 03:27 agis_schedconf.cvmfs.json
[2025-06-04 07:28:04] drwx------. 4 boinc boinc      4096 Jun  4 03:27 pilot3
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc 175336080 Jun  4 07:12 HITS.45006595._033024.pool.root.1
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc       531 Jun  4 07:12 boinc_task_state.xml
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc      1030 Jun  4 07:13 memory_monitor_summary.json
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc   1603667 Jun  4 07:13 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc    378045 Jun  4 07:13 log.45006595._033024.job.log.tgz.1
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc        95 Jun  4 07:14 pilot_heartbeat.json
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc      7687 Jun  4 07:14 heartbeat.json
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc      4417 Jun  4 07:15 pilotlog.txt
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc   1187316 Jun  4 07:15 log.45006595._033024.job.log.1
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc       357 Jun  4 07:15 output.list
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc       620 Jun  4 07:15 runtime_log
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc   1587200 Jun  4 07:15 result.tar.gz
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc       656 Jun  4 07:15 yM8NDmRNgg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm4eYKDmaDU8Im.diag
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc      8673 Jun  4 07:15 runtime_log.err
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc      8192 Jun  4 07:28 boinc_mmap_file
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc        28 Jun  4 07:28 wrapper_checkpoint.txt
[2025-06-04 07:28:04] -rw-r--r--. 1 boinc boinc     20503 Jun  4 07:28 stderr.txt
[2025-06-04 07:28:04] HITS file was successfully produced:
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc 175336080 Jun  4 07:12 shared/HITS.pool.root.1
[2025-06-04 07:28:04]  *** Contents of shared directory: ***
[2025-06-04 07:28:04] total 382988
[2025-06-04 07:28:04] -rw-r--r--. 2 boinc boinc 214723746 Jun  4 03:26 ATLAS.root_0
[2025-06-04 07:28:04] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:26 start_atlas.sh
[2025-06-04 07:28:04] -rw-r--r--. 2 boinc boinc    508883 Jun  4 03:26 input.tar.gz
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc 175336080 Jun  4 07:12 HITS.pool.root.1
[2025-06-04 07:28:04] -rw-------. 1 boinc boinc   1587200 Jun  4 07:15 result.tar.gz
07:28:06 (13028): run_atlas exited; CPU time 49712.503520
07:28:06 (13028): called boinc_finish(0)

</stderr_txt>
]]>

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