Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:32:57 (3279660): wrapper (7.7.26015): starting
11:32:57 (3279660): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:32:57] Arguments: --nthreads 8
[2025-06-03 11:32:57] Threads: 8
[2025-06-03 11:32:57] Checking for CVMFS
[2025-06-03 11:32:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:32:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:32:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:32:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:32:57] 2.12.6.0 3646663 90563 335404 146748 0 186 21014851 32935937 2804 16776704 1 376408411 99.632 367936262 25217 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 11:32:57] CVMFS is ok
[2025-06-03 11:32:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 11:32:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 11:32:57] Further information can be found at the LHC@home message board.
[2025-06-03 11:32:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:32:57] Checking for apptainer binary...
[2025-06-03 11:32:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:32:57] Running /usr/bin/apptainer --version
[2025-06-03 11:32:57] apptainer version 1.4.1-1.el9
[2025-06-03 11:32:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:32:58] c-5-2.aglt2.org
[2025-06-03 11:32:58] apptainer works
[2025-06-03 11:32:58] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:32:58] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:32:58] Starting ATLAS job with PandaID=6677599799
[2025-06-03 11:32:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:53:13]  *** The last 200 lines of the pilot log: ***
[2025-06-03 12:53:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 12:53:13]  is_altstaged=None
[2025-06-03 12:53:13]  is_tar=False
[2025-06-03 12:53:13]  lfn=log.45006595._030885.job.log.tgz.1
[2025-06-03 12:53:13]  mtime=0
[2025-06-03 12:53:13]  protocol_id=None
[2025-06-03 12:53:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 12:53:13]  replicas=None
[2025-06-03 12:53:13]  scope=mc23_13p6TeV
[2025-06-03 12:53:13]  status=None
[2025-06-03 12:53:13]  status_code=0
[2025-06-03 12:53:13]  storage_token=
[2025-06-03 12:53:13]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6677599799/log.45006595._030885.job.log.tgz.1
[2025-06-03 12:53:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/12/log.45006595._030885.job.log.tgz.1
[2025-06-03 12:53:13]  workdir=None
[2025-06-03 12:53:13] ]
[2025-06-03 12:53:13] 2025-06-03 16:52:47,338 | INFO     | transferring file log.45006595._030885.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6677599799/log.45006595._030885.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 12:53:13] 2025-06-03 16:52:47,338 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6677599799/log.45006595._030885.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._030885.job
[2025-06-03 12:53:13] 2025-06-03 16:52:47,350 | INFO     | adding to output.list: log.45006595._030885.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/12/log.45006595._030885.job.log.tg
[2025-06-03 12:53:13] 2025-06-03 16:52:47,351 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 12:53:13] 2025-06-03 16:52:47,351 | INFO     | summary of transferred files:
[2025-06-03 12:53:13] 2025-06-03 16:52:47,351 | INFO     |  -- lfn=log.45006595._030885.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 12:53:13] 2025-06-03 16:52:47,351 | INFO     | stage-out finished correctly
[2025-06-03 12:53:13] 2025-06-03 16:52:49,285 | INFO     | monitor loop #357: job 0:6677599799 is in state 'finished'
[2025-06-03 12:53:13] 2025-06-03 16:52:49,285 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 12:53:13] 2025-06-03 16:52:49,994 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 12:53:13] 2025-06-03 16:52:50,273 | INFO     | job 6677599799 has state=finished
[2025-06-03 12:53:13] 2025-06-03 16:52:50,273 | INFO     | preparing for final server update for job 6677599799 in state='finished'
[2025-06-03 12:53:13] 2025-06-03 16:52:50,336 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-03 12:53:13] 2025-06-03 16:52:50,336 | INFO     | this job has now completed (state=finished)
[2025-06-03 12:53:13] 2025-06-03 16:52:50,336 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 12:53:13] 2025-06-03 16:52:50,336 | INFO     | log transfer has been attempted: DONE
[2025-06-03 12:53:13] 2025-06-03 16:52:50,337 | INFO     | job 6677599799 has finished - writing final server update
[2025-06-03 12:53:13] 2025-06-03 16:52:50,337 | INFO     | total number of processed events: 400 (read)
[2025-06-03 12:53:13] 2025-06-03 16:52:50,351 | INFO     | executing command: lscpu
[2025-06-03 12:53:13] 2025-06-03 16:52:50,405 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 12:53:13] 2025-06-03 16:52:51,795 | INFO     | monitor loop #358: job 0:6677599799 is in state 'finished'
[2025-06-03 12:53:13] 2025-06-03 16:52:51,795 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 12:53:13] 2025-06-03 16:52:53,088 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 12:53:13] 2025-06-03 16:52:53,089 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6677599799/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 12:53:13] 2025-06-03 16:52:53,090 | INFO     | extracted standard info from prmon json
[2025-06-03 12:53:13] 2025-06-03 16:52:53,090 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 12:53:13] 2025-06-03 16:52:53,090 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 12:53:13] 2025-06-03 16:52:53,090 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 12:53:13] 2025-06-03 16:52:53,090 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 12:53:13] 2025-06-03 16:52:53,092 | INFO     | fitting pss+swap vs Time
[2025-06-03 12:53:13] 2025-06-03 16:52:53,093 | INFO     | sum of square deviations: 110960220.0
[2025-06-03 12:53:13] 2025-06-03 16:52:53,093 | INFO     | sum of deviations: 4078893222.000004
[2025-06-03 12:53:13] 2025-06-03 16:52:53,093 | INFO     | mean x: 1748967247.0
[2025-06-03 12:53:13] 2025-06-03 16:52:53,094 | INFO     | mean y: 2216049.323943662
[2025-06-03 12:53:13] 2025-06-03 16:52:53,094 | INFO     | -- intersect: -64289749569.42038
[2025-06-03 12:53:13] 2025-06-03 16:52:53,094 | INFO     | intersect: -64289749569.42038
[2025-06-03 12:53:13] 2025-06-03 16:52:53,094 | INFO     | chi2: 0.8055839654267584
[2025-06-03 12:53:13] 2025-06-03 16:52:53,094 | INFO     | -- intersect: -64289749569.42038
[2025-06-03 12:53:13] 2025-06-03 16:52:53,094 | INFO     | current memory leak: 36.76 B/s (using 71 data points, chi2=0.81)
[2025-06-03 12:53:13] 2025-06-03 16:52:53,095 | INFO     | ..............................
[2025-06-03 12:53:13] 2025-06-03 16:52:53,095 | INFO     | . Timing measurements:
[2025-06-03 12:53:13] 2025-06-03 16:52:53,095 | INFO     | . get job = 0 s
[2025-06-03 12:53:13] 2025-06-03 16:52:53,095 | INFO     | . initial setup = 2 s
[2025-06-03 12:53:13] 2025-06-03 16:52:53,095 | INFO     | . payload setup = 4 s
[2025-06-03 12:53:13] 2025-06-03 16:52:53,095 | INFO     | . stage-in = 0 s
[2025-06-03 12:53:13] 2025-06-03 16:52:53,095 | INFO     | . payload execution = 4759 s
[2025-06-03 12:53:13] 2025-06-03 16:52:53,095 | INFO     | . stage-out = 0 s
[2025-06-03 12:53:13] 2025-06-03 16:52:53,095 | INFO     | . log creation = 0 s
[2025-06-03 12:53:13] 2025-06-03 16:52:53,096 | INFO     | ..............................
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | 
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | job summary report
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | --------------------------------------------------
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | PanDA job id: 6677599799
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | task id: 45006595
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | errors: (none)
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | pilot state: finished 
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | transexitcode: 0
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | exeerrorcode: 0
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | exeerrordiag: 
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | exitcode: 0
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | exitmsg: OK
[2025-06-03 12:53:13] 2025-06-03 16:52:53,205 | INFO     | cpuconsumptiontime: 33203 s
[2025-06-03 12:53:13] 2025-06-03 16:52:53,206 | INFO     | nevents: 400
[2025-06-03 12:53:13] 2025-06-03 16:52:53,206 | INFO     | neventsw: 0
[2025-06-03 12:53:13] 2025-06-03 16:52:53,206 | INFO     | pid: 3290388
[2025-06-03 12:53:13] 2025-06-03 16:52:53,206 | INFO     | pgrp: 3290388
[2025-06-03 12:53:13] 2025-06-03 16:52:53,206 | INFO     | corecount: 8
[2025-06-03 12:53:13] 2025-06-03 16:52:53,206 | INFO     | event service: False
[2025-06-03 12:53:13] 2025-06-03 16:52:53,206 | INFO     | sizes: {0: 2405131, 3: 2405337, 11: 2405365, 4767: 2431505, 4768: 2440501, 4771: 2440501, 4774: 2440799}
[2025-06-03 12:53:13] 2025-06-03 16:52:53,206 | INFO     | --------------------------------------------------
[2025-06-03 12:53:13] 2025-06-03 16:52:53,206 | INFO     | 
[2025-06-03 12:53:13] 2025-06-03 16:52:53,206 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-03 12:53:13] 2025-06-03 16:52:53,217 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,217 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,218 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,218 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,219 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,219 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 12:53:13] 2025-06-03 16:52:53,220 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,220 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 12:53:13] 2025-06-03 16:52:53,220 | INFO     | job 6677599799 has completed (purged errors)
[2025-06-03 12:53:13] 2025-06-03 16:52:53,220 | INFO     | overall cleanup function is called
[2025-06-03 12:53:13] 2025-06-03 16:52:54,227 | INFO     | --- collectZombieJob: --- 10, [3290388]
[2025-06-03 12:53:13] 2025-06-03 16:52:54,227 | INFO     | zombie collector waiting for pid 3290388
[2025-06-03 12:53:13] 2025-06-03 16:52:54,227 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 12:53:13] 2025-06-03 16:52:54,227 | INFO     | collected zombie processes
[2025-06-03 12:53:13] 2025-06-03 16:52:54,227 | INFO     | will attempt to kill all subprocesses of pid=3290388
[2025-06-03 12:53:13] 2025-06-03 16:52:54,420 | INFO     | process IDs to be killed: [3290388] (in reverse order)
[2025-06-03 12:53:13] 2025-06-03 16:52:54,464 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 12:53:13] 2025-06-03 16:52:54,464 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 12:53:13] 2025-06-03 16:52:54,469 | INFO     | did not find any defunct processes belonging to 3290388
[2025-06-03 12:53:13] 2025-06-03 16:52:54,474 | INFO     | did not find any defunct processes belonging to 3290388
[2025-06-03 12:53:13] 2025-06-03 16:52:54,474 | INFO     | ready for new job
[2025-06-03 12:53:13] 2025-06-03 16:52:54,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 12:53:13] 2025-06-03 16:52:54,475 | INFO     | **************************************
[2025-06-03 12:53:13] 2025-06-03 16:52:54,475 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 12:53:13] 2025-06-03 16:52:54,475 | INFO     | **************************************
[2025-06-03 12:53:13] 2025-06-03 16:52:54,475 | INFO     | 
[2025-06-03 12:53:13] 2025-06-03 16:52:54,489 | INFO     | architecture information:
[2025-06-03 12:53:13] 2025-06-03 16:52:54,489 | INFO     | executing command: cat /etc/os-release
[2025-06-03 12:53:13] 2025-06-03 16:52:54,498 | INFO     | cat /etc/os-release:
[2025-06-03 12:53:13] NAME="CentOS Linux"
[2025-06-03 12:53:13] VERSION="7 (Core)"
[2025-06-03 12:53:13] ID="centos"
[2025-06-03 12:53:13] ID_LIKE="rhel fedora"
[2025-06-03 12:53:13] VERSION_ID="7"
[2025-06-03 12:53:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 12:53:13] ANSI_COLOR="0;31"
[2025-06-03 12:53:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 12:53:13] HOME_URL="https://www.centos.org/"
[2025-06-03 12:53:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 12:53:13] 
[2025-06-03 12:53:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 12:53:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 12:53:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 12:53:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 12:53:13] 
[2025-06-03 12:53:13] 2025-06-03 16:52:54,499 | INFO     | **************************************
[2025-06-03 12:53:13] 2025-06-03 16:52:55,001 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-03 12:53:13] 2025-06-03 16:52:55,011 | INFO     | sufficient remaining disk space (74606182400 B)
[2025-06-03 12:53:13] 2025-06-03 16:52:55,012 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 12:53:13] 2025-06-03 16:52:55,012 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 12:53:13] 2025-06-03 16:52:55,012 | INFO     | update_server=False
[2025-06-03 12:53:13] 2025-06-03 16:52:55,012 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 12:53:13] 2025-06-03 16:52:55,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:53:13] 2025-06-03 16:52:55,145 | INFO     | PID=3283645 has CPU usage=10.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-03 12:53:13] 2025-06-03 16:52:55,145 | INFO     | .. there are 5 such processes running
[2025-06-03 12:53:13] 2025-06-03 16:52:55,145 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 12:53:13] 2025-06-03 16:52:55,145 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 12:53:13] 2025-06-03 16:52:55,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 12:53:13] 2025-06-03 16:52:55,273 | INFO     | all job control threads have been joined
[2025-06-03 12:53:13] 2025-06-03 16:52:55,280 | INFO     | all data control threads have been joined
[2025-06-03 12:53:13] 2025-06-03 16:52:55,302 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:53:13] 2025-06-03 16:52:55,302 | INFO     | aborting loop
[2025-06-03 12:53:13] 2025-06-03 16:52:55,418 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 12:53:13] 2025-06-03 16:52:55,619 | INFO     | all payload control threads have been joined
[2025-06-03 12:53:13] 2025-06-03 16:52:56,018 | INFO     | [job] queue monitor thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:56,018 | INFO     | [job] retrieve thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:56,103 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 12:53:13] 2025-06-03 16:52:56,271 | INFO     | [payload] failed_post thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:56,278 | INFO     | [job] control thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:56,286 | INFO     | [data] control thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:56,307 | INFO     | [job] job monitor thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:56,625 | INFO     | [payload] control thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:56,637 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:56,877 | INFO     | [job] validate thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:56,897 | INFO     | [data] copytool_in thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:57,052 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:57,140 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:57,330 | INFO     | [payload] validate_post thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:52:57,423 | INFO     | [data] copytool_out thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:53:00,109 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:53:05,433 | INFO     | job.realtimelogging is not enabled
[2025-06-03 12:53:13] 2025-06-03 16:53:06,438 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 12:53:13] 2025-06-03 16:53:08,020 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140709552506688)>', '<ExcThread(monitor, started 140709067732736)>']
[2025-06-03 12:53:13] 2025-06-03 16:53:08,205 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 12:53:13] 2025-06-03 16:53:08,205 | INFO     | [monitor] control thread has ended
[2025-06-03 12:53:13] 2025-06-03 16:53:13,046 | INFO     | all workflow threads have been joined
[2025-06-03 12:53:13] 2025-06-03 16:53:13,046 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 12:53:13] 2025-06-03 16:53:13,047 | INFO     | traces error code: 0
[2025-06-03 12:53:13] 2025-06-03 16:53:13,047 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 12:53:13] 2025-06-03 16:53:13,151 [wrapper] ==== pilot stdout END ====
[2025-06-03 12:53:13] 2025-06-03 16:53:13,152 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 12:53:13] 2025-06-03 16:53:13,154 [wrapper] pilotpid: 3283645
[2025-06-03 12:53:13] 2025-06-03 16:53:13,155 [wrapper] Pilot exit status: 0
[2025-06-03 12:53:13] 2025-06-03 16:53:13,162 [wrapper] pandaids: 6677599799
[2025-06-03 12:53:13] 2025-06-03 16:53:13,208 [wrapper] cleanup supervisor_pilot 3474060 3283646
[2025-06-03 12:53:13] 2025-06-03 16:53:13,210 [wrapper] Test setup, not cleaning
[2025-06-03 12:53:13] 2025-06-03 16:53:13,211 [wrapper] apfmon messages muted
[2025-06-03 12:53:13] 2025-06-03 16:53:13,213 [wrapper] ==== wrapper stdout END ====
[2025-06-03 12:53:13] 2025-06-03 16:53:13,214 [wrapper] ==== wrapper stderr END ====
[2025-06-03 12:53:13]  *** Error codes and diagnostics ***
[2025-06-03 12:53:13]     "exeErrorCode": 0,
[2025-06-03 12:53:13]     "exeErrorDiag": "",
[2025-06-03 12:53:13]     "pilotErrorCode": 0,
[2025-06-03 12:53:13]     "pilotErrorDiag": "",
[2025-06-03 12:53:13]  *** Listing of results directory ***
[2025-06-03 12:53:13] total 394892
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 06:57 pilot3.tar.gz
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 07:36 queuedata.json
[2025-06-03 12:53:13] -rwx------. 1 boincer umatlas     37140 Jun  3 07:37 runpilot2-wrapper.sh
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas       100 Jun  3 11:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 12:53:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 11:32 run_atlas
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas       105 Jun  3 11:32 job.xml
[2025-06-03 12:53:13] -rw-r--r--. 2 boincer umatlas 214501177 Jun  3 11:32 EVNT.45006593._001239.pool.root.1
[2025-06-03 12:53:13] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 11:32 start_atlas.sh
[2025-06-03 12:53:13] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 11:32 shared
[2025-06-03 12:53:13] -rw-r--r--. 2 boincer umatlas    508875 Jun  3 11:32 input.tar.gz
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas         0 Jun  3 11:32 boinc_lockfile
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas      2523 Jun  3 11:32 pandaJob.out
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas    983735 Jun  3 11:33 agis_schedconf.cvmfs.json
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas   1603667 Jun  3 11:33 agis_ddmendpoints.agis.ALL.json
[2025-06-03 12:53:13] drwx------. 4 boincer umatlas      4096 Jun  3 11:33 pilot3
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas      6673 Jun  3 12:48 init_data.xml
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas       529 Jun  3 12:52 boinc_task_state.xml
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas 184492200 Jun  3 12:52 HITS.45006595._030885.pool.root.1
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas        95 Jun  3 12:52 pilot_heartbeat.json
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas      1032 Jun  3 12:52 memory_monitor_summary.json
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas    295672 Jun  3 12:52 log.45006595._030885.job.log.tgz.1
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas      7699 Jun  3 12:52 heartbeat.json
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 12:53 boinc_mmap_file
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas        27 Jun  3 12:53 wrapper_checkpoint.txt
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas      4820 Jun  3 12:53 pilotlog.txt
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas    471652 Jun  3 12:53 log.45006595._030885.job.log.1
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas       357 Jun  3 12:53 output.list
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas       620 Jun  3 12:53 runtime_log
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas    788480 Jun  3 12:53 result.tar.gz
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas      8644 Jun  3 12:53 runtime_log.err
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas       648 Jun  3 12:53 ip5KDmG8eg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlpjKDm15hxvn.diag
[2025-06-03 12:53:13] -rw-r--r--. 1 boincer umatlas     21402 Jun  3 12:53 stderr.txt
[2025-06-03 12:53:13] HITS file was successfully produced:
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas 184492200 Jun  3 12:52 shared/HITS.pool.root.1
[2025-06-03 12:53:13]  *** Contents of shared directory: ***
[2025-06-03 12:53:13] total 390940
[2025-06-03 12:53:13] -rw-r--r--. 2 boincer umatlas 214501177 Jun  3 11:32 ATLAS.root_0
[2025-06-03 12:53:13] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 11:32 start_atlas.sh
[2025-06-03 12:53:13] -rw-r--r--. 2 boincer umatlas    508875 Jun  3 11:32 input.tar.gz
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas 184492200 Jun  3 12:52 HITS.pool.root.1
[2025-06-03 12:53:13] -rw-------. 1 boincer umatlas    788480 Jun  3 12:53 result.tar.gz
12:53:14 (3279660): run_atlas exited; CPU time 33327.822240
12:53:14 (3279660): called boinc_finish(0)

</stderr_txt>
]]>

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