Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:05:41 (27986): wrapper (7.7.26015): starting
03:05:41 (27986): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 03:05:41] Arguments: --nthreads 8
[2025-06-04 03:05:41] Threads: 8
[2025-06-04 03:05:41] Checking for CVMFS
[2025-06-04 03:05:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 03:05:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 03:05:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 03:05:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 03:05:42] 2.11.2.0 6477 32540 94700 146762 2 210 24911736 25165824 3504 130560 0 16787391 99.834 18537599 1900 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 03:05:42] CVMFS is ok
[2025-06-04 03:05:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 03:05:42] Checking for apptainer binary...
[2025-06-04 03:05:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 03:05:42] Running /usr/bin/apptainer --version
[2025-06-04 03:05:42] apptainer version 1.3.2-1.el7
[2025-06-04 03:05:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 03:05:44] cg-vwn261.simple-grid.lan
[2025-06-04 03:05:44] apptainer works
[2025-06-04 03:05:44] Set ATHENA_PROC_NUMBER=8
[2025-06-04 03:05:44] Set ATHENA_CORE_NUMBER=8
[2025-06-04 03:05:44] Starting ATLAS job with PandaID=6677619520
[2025-06-04 03:05:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:47:08]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:47:08] 2025-06-04 05:06:00,254 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:47:08] 2025-06-04 05:06:00,254 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:47:08] 2025-06-04 05:06:00,255 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:47:08] 2025-06-04 05:06:00,255 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:47:08] 2025-06-04 05:06:00,260 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:47:08] 2025-06-04 05:06:00,260 | INFO     | sum of square deviations: 3871990738.0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,262 | INFO     | sum of deviations: 63649094702.00001
[2025-06-04 10:47:08] 2025-06-04 05:06:00,263 | INFO     | mean x: 1749006379.5
[2025-06-04 10:47:08] 2025-06-04 05:06:00,263 | INFO     | mean y: 2451854.0086206896
[2025-06-04 10:47:08] 2025-06-04 05:06:00,263 | INFO     | -- intersect: -28748307178.204144
[2025-06-04 10:47:08] 2025-06-04 05:06:00,263 | INFO     | intersect: -28748307178.204144
[2025-06-04 10:47:08] 2025-06-04 05:06:00,263 | INFO     | chi2: 6.384125150351279
[2025-06-04 10:47:08] 2025-06-04 05:06:00,264 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,266 | INFO     | sum of deviations: 77512504739.00002
[2025-06-04 10:47:08] 2025-06-04 05:06:00,266 | INFO     | mean x: 1749006227.0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,266 | INFO     | mean y: 2460316.1453744494
[2025-06-04 10:47:08] 2025-06-04 05:06:00,266 | INFO     | -- intersect: -37375496616.81251
[2025-06-04 10:47:08] 2025-06-04 05:06:00,266 | INFO     | intersect: -37375496616.81251
[2025-06-04 10:47:08] 2025-06-04 05:06:00,267 | INFO     | chi2: 5.667816290884473
[2025-06-04 10:47:08] 2025-06-04 05:06:00,267 | INFO     | current chi2=5.667816290884473 (change=11.22015691417628 %)
[2025-06-04 10:47:08] 2025-06-04 05:06:00,267 | INFO     | right removable region: 226
[2025-06-04 10:47:08] 2025-06-04 05:06:00,267 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,269 | INFO     | sum of deviations: -13353719168.999998
[2025-06-04 10:47:08] 2025-06-04 05:06:00,269 | INFO     | mean x: 1749006532.0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,269 | INFO     | mean y: 2499734.6343612336
[2025-06-04 10:47:08] 2025-06-04 05:06:00,269 | INFO     | -- intersect: 6441910107.3976345
[2025-06-04 10:47:08] 2025-06-04 05:06:00,269 | INFO     | intersect: 6441910107.3976345
[2025-06-04 10:47:08] 2025-06-04 05:06:00,270 | INFO     | chi2: 1.994111952438283
[2025-06-04 10:47:08] 2025-06-04 05:06:00,270 | INFO     | current chi2=1.994111952438283 (change=68.76452285199079 %)
[2025-06-04 10:47:08] 2025-06-04 05:06:00,270 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 10:47:08] 2025-06-04 05:06:00,272 | INFO     | sum of deviations: -45897003015.5
[2025-06-04 10:47:08] 2025-06-04 05:06:00,272 | INFO     | mean x: 1749006684.5
[2025-06-04 10:47:08] 2025-06-04 05:06:00,272 | INFO     | mean y: 2520756.1756756757
[2025-06-04 10:47:08] 2025-06-04 05:06:00,272 | INFO     | -- intersect: 23664292579.602203
[2025-06-04 10:47:08] 2025-06-04 05:06:00,272 | INFO     | intersect: 23664292579.602203
[2025-06-04 10:47:08] 2025-06-04 05:06:00,273 | INFO     | chi2: 0.9864580068224305
[2025-06-04 10:47:08] 2025-06-04 05:06:00,273 | INFO     | current chi2=0.9864580068224305 (change=50.531463109869655 %)
[2025-06-04 10:47:08] 2025-06-04 05:06:00,273 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,275 | INFO     | sum of deviations: -47745031474.0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,275 | INFO     | mean x: 1749006837.0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,275 | INFO     | mean y: 2521994.0829493087
[2025-06-04 10:47:08] 2025-06-04 05:06:00,275 | INFO     | -- intersect: 26358023740.051014
[2025-06-04 10:47:08] 2025-06-04 05:06:00,276 | INFO     | intersect: 26358023740.051014
[2025-06-04 10:47:08] 2025-06-04 05:06:00,276 | INFO     | chi2: 0.9669791808738594
[2025-06-04 10:47:08] 2025-06-04 05:06:00,276 | INFO     | current chi2=0.9669791808738594 (change=1.9746229250362217 %)
[2025-06-04 10:47:08] 2025-06-04 05:06:00,276 | INFO     | left removable region: 30
[2025-06-04 10:47:08] 2025-06-04 05:06:00,276 | INFO     | sum of square deviations: 2334722845.0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,278 | INFO     | sum of deviations: -11553892178.499998
[2025-06-04 10:47:08] 2025-06-04 05:06:00,278 | INFO     | mean x: 1749007111.5
[2025-06-04 10:47:08] 2025-06-04 05:06:00,278 | INFO     | mean y: 2516300.352040816
[2025-06-04 10:47:08] 2025-06-04 05:06:00,278 | INFO     | -- intersect: 8657864676.703207
[2025-06-04 10:47:08] 2025-06-04 05:06:00,278 | INFO     | intersect: 8657864676.703207
[2025-06-04 10:47:08] 2025-06-04 05:06:00,279 | INFO     | chi2: 0.10965442439175468
[2025-06-04 10:47:08] 2025-06-04 05:06:00,279 | INFO     | -- intersect: 8657864676.703207
[2025-06-04 10:47:08] 2025-06-04 05:06:00,279 | INFO     | current memory leak: -4.95 B/s (using 196 data points, chi2=0.11)
[2025-06-04 10:47:08] 2025-06-04 05:06:00,280 | INFO     | ..............................
[2025-06-04 10:47:08] 2025-06-04 05:06:00,280 | INFO     | . Timing measurements:
[2025-06-04 10:47:08] 2025-06-04 05:06:00,280 | INFO     | . get job = 0 s
[2025-06-04 10:47:08] 2025-06-04 05:06:00,280 | INFO     | . initial setup = 2 s
[2025-06-04 10:47:08] 2025-06-04 05:06:00,280 | INFO     | . payload setup = 33 s
[2025-06-04 10:47:08] 2025-06-04 05:06:00,280 | INFO     | . stage-in = 0 s
[2025-06-04 10:47:08] 2025-06-04 05:06:00,280 | INFO     | . payload execution = 14208 s
[2025-06-04 10:47:08] 2025-06-04 05:06:00,280 | INFO     | . stage-out = 3 s
[2025-06-04 10:47:08] 2025-06-04 05:06:00,280 | INFO     | . log creation = 1 s
[2025-06-04 10:47:08] 2025-06-04 05:06:00,281 | INFO     | ..............................
[2025-06-04 10:47:08] 2025-06-04 05:06:00,679 | INFO     | 
[2025-06-04 10:47:08] 2025-06-04 05:06:00,680 | INFO     | job summary report
[2025-06-04 10:47:08] 2025-06-04 05:06:00,680 | INFO     | --------------------------------------------------
[2025-06-04 10:47:08] 2025-06-04 05:06:00,680 | INFO     | PanDA job id: 6677619520
[2025-06-04 10:47:08] 2025-06-04 05:06:00,680 | INFO     | task id: 45006595
[2025-06-04 10:47:08] 2025-06-04 05:06:00,680 | INFO     | errors: (none)
[2025-06-04 10:47:08] 2025-06-04 05:06:00,680 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:47:08] 2025-06-04 05:06:00,680 | INFO     | pilot state: finished 
[2025-06-04 10:47:08] 2025-06-04 05:06:00,680 | INFO     | transexitcode: 0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,680 | INFO     | exeerrorcode: 0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,681 | INFO     | exeerrordiag: 
[2025-06-04 10:47:08] 2025-06-04 05:06:00,681 | INFO     | exitcode: 0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,681 | INFO     | exitmsg: OK
[2025-06-04 10:47:08] 2025-06-04 05:06:00,681 | INFO     | cpuconsumptiontime: 52368 s
[2025-06-04 10:47:08] 2025-06-04 05:06:00,681 | INFO     | nevents: 400
[2025-06-04 10:47:08] 2025-06-04 05:06:00,681 | INFO     | neventsw: 0
[2025-06-04 10:47:08] 2025-06-04 05:06:00,681 | INFO     | pid: 7036
[2025-06-04 10:47:08] 2025-06-04 05:06:00,681 | INFO     | pgrp: 7036
[2025-06-04 10:47:08] 2025-06-04 05:06:00,681 | INFO     | corecount: 8
[2025-06-04 10:47:08] 2025-06-04 05:06:00,682 | INFO     | event service: False
[2025-06-04 10:47:08] 2025-06-04 05:06:00,682 | INFO     | sizes: {0: 2405184, 1: 2405184, 12: 2405212, 14: 2405446, 22: 2405474, 14245: 2435237, 14246: 2435364, 14249: 2444361, 14252: 2444417, 14331: 2444587}
[2025-06-04 10:47:08] 2025-06-04 05:06:00,682 | INFO     | --------------------------------------------------
[2025-06-04 10:47:08] 2025-06-04 05:06:00,682 | INFO     | 
[2025-06-04 10:47:08] 2025-06-04 05:06:00,682 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-04 10:47:08] 2025-06-04 05:06:01,156 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,156 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,156 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,156 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,156 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,157 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,157 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,157 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,157 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,157 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,157 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,157 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,157 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,157 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,158 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,158 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,158 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,158 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:47:08] 2025-06-04 05:06:01,158 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,158 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:47:08] 2025-06-04 05:06:01,158 | INFO     | job 6677619520 has completed (purged errors)
[2025-06-04 10:47:08] 2025-06-04 05:06:01,158 | INFO     | overall cleanup function is called
[2025-06-04 10:47:08] 2025-06-04 05:06:02,167 | INFO     | --- collectZombieJob: --- 10, [7036]
[2025-06-04 10:47:08] 2025-06-04 05:06:02,168 | INFO     | zombie collector waiting for pid 7036
[2025-06-04 10:47:08] 2025-06-04 05:06:02,168 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:47:08] 2025-06-04 05:06:02,168 | INFO     | collected zombie processes
[2025-06-04 10:47:08] 2025-06-04 05:06:02,168 | INFO     | will attempt to kill all subprocesses of pid=7036
[2025-06-04 10:47:08] 2025-06-04 05:06:02,286 | INFO     | process IDs to be killed: [7036] (in reverse order)
[2025-06-04 10:47:08] 2025-06-04 05:06:03,034 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:47:08] 2025-06-04 05:06:03,034 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:47:08] 2025-06-04 05:06:03,037 | INFO     | did not find any defunct processes belonging to 7036
[2025-06-04 10:47:08] 2025-06-04 05:06:03,040 | INFO     | did not find any defunct processes belonging to 7036
[2025-06-04 10:47:08] 2025-06-04 05:06:03,040 | INFO     | ready for new job
[2025-06-04 10:47:08] 2025-06-04 05:06:03,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:47:08] 2025-06-04 05:06:03,042 | INFO     | **************************************
[2025-06-04 10:47:08] 2025-06-04 05:06:03,043 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:47:08] 2025-06-04 05:06:03,043 | INFO     | **************************************
[2025-06-04 10:47:08] 2025-06-04 05:06:03,043 | INFO     | 
[2025-06-04 10:47:08] 2025-06-04 05:06:03,043 | INFO     | pilot is running in a VM
[2025-06-04 10:47:08] 2025-06-04 05:06:03,044 | INFO     | architecture information:
[2025-06-04 10:47:08] 2025-06-04 05:06:03,057 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:47:08] 2025-06-04 05:06:03,280 | INFO     | cat /etc/os-release:
[2025-06-04 10:47:08] NAME="CentOS Linux"
[2025-06-04 10:47:08] VERSION="7 (Core)"
[2025-06-04 10:47:08] ID="centos"
[2025-06-04 10:47:08] ID_LIKE="rhel fedora"
[2025-06-04 10:47:08] VERSION_ID="7"
[2025-06-04 10:47:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:47:08] ANSI_COLOR="0;31"
[2025-06-04 10:47:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:47:08] HOME_URL="https://www.centos.org/"
[2025-06-04 10:47:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:47:08] 
[2025-06-04 10:47:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:47:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:47:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:47:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:47:08] 
[2025-06-04 10:47:08] 2025-06-04 05:06:03,280 | INFO     | **************************************
[2025-06-04 10:47:08] 2025-06-04 05:06:03,783 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-04 10:47:08] 2025-06-04 05:06:03,965 | INFO     | sufficient remaining disk space (496794337280 B)
[2025-06-04 10:47:08] 2025-06-04 05:06:03,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:47:08] 2025-06-04 05:06:03,965 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:47:08] 2025-06-04 05:06:03,965 | INFO     | update_server=False
[2025-06-04 10:47:08] 2025-06-04 05:06:03,965 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:47:08] 2025-06-04 05:06:03,969 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:47:08] 2025-06-04 05:06:03,970 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:47:08] 2025-06-04 05:06:03,970 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:47:08] 2025-06-04 05:06:03,970 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:47:08] 2025-06-04 05:06:04,498 | INFO     | all data control threads have been joined
[2025-06-04 10:47:08] 2025-06-04 05:06:04,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:47:08] 2025-06-04 05:06:04,778 | INFO     | aborting loop
[2025-06-04 10:47:08] 2025-06-04 05:06:04,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:47:08] 2025-06-04 05:06:04,826 | INFO     | all job control threads have been joined
[2025-06-04 10:47:08] 2025-06-04 05:06:04,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:47:08] 2025-06-04 05:06:04,971 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:05,072 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:05,125 | INFO     | all payload control threads have been joined
[2025-06-04 10:47:08] 2025-06-04 05:06:05,366 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:05,461 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:05,476 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:47:08] 2025-06-04 05:06:05,504 | INFO     | [data] control thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:05,715 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:05,783 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:05,832 | INFO     | [job] control thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:05,901 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:06,131 | INFO     | [payload] control thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:06,453 | INFO     | [job] validate thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:06,482 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:06,575 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:06,811 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:08,970 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:14,763 | INFO     | job.realtimelogging is not enabled
[2025-06-04 10:47:08] 2025-06-04 05:06:15,769 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:47:08] 2025-06-04 05:06:15,983 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140041599014720)>', '<ExcThread(monitor, started 140041007384320)>']
[2025-06-04 10:47:08] 2025-06-04 05:06:16,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:47:08] 2025-06-04 05:06:16,043 | INFO     | [monitor] control thread has ended
[2025-06-04 10:47:08] 2025-06-04 05:06:21,009 | INFO     | all workflow threads have been joined
[2025-06-04 10:47:08] 2025-06-04 05:06:21,010 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:47:08] 2025-06-04 05:06:21,010 | INFO     | traces error code: 0
[2025-06-04 10:47:08] 2025-06-04 05:06:21,010 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:47:08] 2025-06-04 05:06:21,375 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:47:08] 2025-06-04 05:06:21,454 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:47:08] 2025-06-04 05:06:21,518 [wrapper] pilotpid: 9895
[2025-06-04 10:47:08] 2025-06-04 05:06:21,585 [wrapper] Pilot exit status: 0
[2025-06-04 10:47:08] 2025-06-04 05:06:21,912 [wrapper] pandaids: 6677619520
[2025-06-04 10:47:08] 2025-06-04 05:06:22,099 [wrapper] cleanup supervisor_pilot  4192 9896
[2025-06-04 10:47:08] 2025-06-04 05:06:22,213 [wrapper] Test setup, not cleaning
[2025-06-04 10:47:08] 2025-06-04 05:06:22,271 [wrapper] apfmon messages muted
[2025-06-04 10:47:08] 2025-06-04 05:06:22,296 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:47:08] 2025-06-04 05:06:22,361 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:47:08]  *** Error codes and diagnostics ***
[2025-06-04 10:47:08]     "exeErrorCode": 0,
[2025-06-04 10:47:08]     "exeErrorDiag": "",
[2025-06-04 10:47:08]     "pilotErrorCode": 0,
[2025-06-04 10:47:08]     "pilotErrorDiag": "",
[2025-06-04 10:47:08]  *** Listing of results directory ***
[2025-06-04 10:47:08] total 396064
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc    495897 Jun  3 14:33 pilot3.tar.gz
[2025-06-04 10:47:08] -rwx------. 1 boinc boinc     37140 Jun  3 14:41 runpilot2-wrapper.sh
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc      5111 Jun  3 14:41 queuedata.json
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc       100 Jun  4 03:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:47:08] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 03:05 run_atlas
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc       105 Jun  4 03:05 job.xml
[2025-06-04 10:47:08] -rw-r--r--. 2 boinc boinc 213133043 Jun  4 03:05 EVNT.45006593._001317.pool.root.1
[2025-06-04 10:47:08] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:05 start_atlas.sh
[2025-06-04 10:47:08] drwxrwx--x. 2 boinc boinc        68 Jun  4 03:05 shared
[2025-06-04 10:47:08] -rw-r--r--. 2 boinc boinc    508880 Jun  4 03:05 input.tar.gz
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc      6391 Jun  4 03:05 init_data.xml
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc         0 Jun  4 03:05 boinc_lockfile
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc      2525 Jun  4 03:05 pandaJob.out
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc    986069 Jun  4 03:06 agis_schedconf.cvmfs.json
[2025-06-04 10:47:08] drwx------. 4 boinc boinc      4096 Jun  4 03:06 pilot3
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc 185356084 Jun  4 07:03 HITS.45006595._032740.pool.root.1
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc       531 Jun  4 07:03 boinc_task_state.xml
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc      1019 Jun  4 07:04 memory_monitor_summary.json
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc   1603667 Jun  4 07:04 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc    401102 Jun  4 07:04 log.45006595._032740.job.log.tgz.1
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc        95 Jun  4 07:05 pilot_heartbeat.json
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc      7706 Jun  4 07:06 heartbeat.json
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc      4611 Jun  4 07:06 pilotlog.txt
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc   1231155 Jun  4 07:06 log.45006595._032740.job.log.1
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc       357 Jun  4 07:06 output.list
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc       620 Jun  4 07:06 runtime_log
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc   1648640 Jun  4 07:06 result.tar.gz
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc      8659 Jun  4 07:06 runtime_log.err
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc       656 Jun  4 07:06 qpOMDmK8fg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm38jKDmRzE3Oo.diag
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc      8192 Jun  4 10:47 boinc_mmap_file
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc        28 Jun  4 10:47 wrapper_checkpoint.txt
[2025-06-04 10:47:08] -rw-r--r--. 1 boinc boinc     20487 Jun  4 10:47 stderr.txt
[2025-06-04 10:47:08] HITS file was successfully produced:
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc 185356084 Jun  4 07:03 shared/HITS.pool.root.1
[2025-06-04 10:47:08]  *** Contents of shared directory: ***
[2025-06-04 10:47:08] total 391280
[2025-06-04 10:47:08] -rw-r--r--. 2 boinc boinc 213133043 Jun  4 03:05 ATLAS.root_0
[2025-06-04 10:47:08] -rw-r--r--. 2 boinc boinc     15093 Jun  4 03:05 start_atlas.sh
[2025-06-04 10:47:08] -rw-r--r--. 2 boinc boinc    508880 Jun  4 03:05 input.tar.gz
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc 185356084 Jun  4 07:03 HITS.pool.root.1
[2025-06-04 10:47:08] -rw-------. 1 boinc boinc   1648640 Jun  4 07:06 result.tar.gz
10:47:10 (27986): run_atlas exited; CPU time 52558.700080
10:47:10 (27986): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN