Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:25:12 (3252272): wrapper (7.7.26015): starting
11:25:12 (3252272): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:25:12] Arguments: --nthreads 8
[2025-06-03 11:25:12] Threads: 8
[2025-06-03 11:25:12] Checking for CVMFS
[2025-06-03 11:25:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:25:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:25:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:25:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:25:12] 2.12.6.0 3646663 90555 333112 146748 3 56 21013794 32935937 2847 16776704 1 376351130 99.632 367936181 25217 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 11:25:12] CVMFS is ok
[2025-06-03 11:25:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 11:25:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 11:25:12] Further information can be found at the LHC@home message board.
[2025-06-03 11:25:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:25:12] Checking for apptainer binary...
[2025-06-03 11:25:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:25:12] Running /usr/bin/apptainer --version
[2025-06-03 11:25:13] apptainer version 1.4.1-1.el9
[2025-06-03 11:25:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:25:13] c-5-2.aglt2.org
[2025-06-03 11:25:13] apptainer works
[2025-06-03 11:25:13] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:25:13] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:25:13] Starting ATLAS job with PandaID=6677580102
[2025-06-03 11:25:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:42:52]  *** The last 200 lines of the pilot log: ***
[2025-06-03 12:42:52]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 12:42:52]  is_altstaged=None
[2025-06-03 12:42:52]  is_tar=False
[2025-06-03 12:42:52]  lfn=log.45006595._030081.job.log.tgz.1
[2025-06-03 12:42:52]  mtime=0
[2025-06-03 12:42:52]  protocol_id=None
[2025-06-03 12:42:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 12:42:52]  replicas=None
[2025-06-03 12:42:52]  scope=mc23_13p6TeV
[2025-06-03 12:42:52]  status=None
[2025-06-03 12:42:52]  status_code=0
[2025-06-03 12:42:52]  storage_token=
[2025-06-03 12:42:52]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6677580102/log.45006595._030081.job.log.tgz.1
[2025-06-03 12:42:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7a/b8/log.45006595._030081.job.log.tgz.1
[2025-06-03 12:42:52]  workdir=None
[2025-06-03 12:42:52] ]
[2025-06-03 12:42:52] 2025-06-03 16:42:34,147 | INFO     | transferring file log.45006595._030081.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6677580102/log.45006595._030081.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 12:42:52] 2025-06-03 16:42:34,148 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6677580102/log.45006595._030081.job.log.tgz.1 /tmp/boinchome/slots/3/log.45006595._030081.job
[2025-06-03 12:42:52] 2025-06-03 16:42:34,163 | INFO     | adding to output.list: log.45006595._030081.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7a/b8/log.45006595._030081.job.log.tg
[2025-06-03 12:42:52] 2025-06-03 16:42:34,164 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 12:42:52] 2025-06-03 16:42:34,164 | INFO     | summary of transferred files:
[2025-06-03 12:42:52] 2025-06-03 16:42:34,165 | INFO     |  -- lfn=log.45006595._030081.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 12:42:52] 2025-06-03 16:42:34,165 | INFO     | stage-out finished correctly
[2025-06-03 12:42:52] 2025-06-03 16:42:34,269 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 12:42:52] 2025-06-03 16:42:34,726 | INFO     | PID=3255885 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-03 12:42:52] 2025-06-03 16:42:34,727 | INFO     | .. there are 5 such processes running
[2025-06-03 12:42:52] 2025-06-03 16:42:34,993 | INFO     | job 6677580102 has state=finished
[2025-06-03 12:42:52] 2025-06-03 16:42:34,993 | INFO     | preparing for final server update for job 6677580102 in state='finished'
[2025-06-03 12:42:52] 2025-06-03 16:42:34,994 | INFO     | this job has now completed (state=finished)
[2025-06-03 12:42:52] 2025-06-03 16:42:34,994 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 12:42:52] 2025-06-03 16:42:34,994 | INFO     | log transfer has been attempted: DONE
[2025-06-03 12:42:52] 2025-06-03 16:42:34,994 | INFO     | job 6677580102 has finished - writing final server update
[2025-06-03 12:42:52] 2025-06-03 16:42:34,995 | INFO     | total number of processed events: 400 (read)
[2025-06-03 12:42:52] 2025-06-03 16:42:35,009 | INFO     | executing command: lscpu
[2025-06-03 12:42:52] 2025-06-03 16:42:35,062 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 12:42:52] 2025-06-03 16:42:38,460 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 12:42:52] 2025-06-03 16:42:38,461 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6677580102/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 12:42:52] 2025-06-03 16:42:38,462 | INFO     | extracted standard info from prmon json
[2025-06-03 12:42:52] 2025-06-03 16:42:38,462 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 12:42:52] 2025-06-03 16:42:38,462 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 12:42:52] 2025-06-03 16:42:38,463 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 12:42:52] 2025-06-03 16:42:38,463 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 12:42:52] 2025-06-03 16:42:38,465 | INFO     | fitting pss+swap vs Time
[2025-06-03 12:42:52] 2025-06-03 16:42:38,465 | INFO     | sum of square deviations: 101843770.0
[2025-06-03 12:42:52] 2025-06-03 16:42:38,466 | INFO     | sum of deviations: 2611946129.0000005
[2025-06-03 12:42:52] 2025-06-03 16:42:38,466 | INFO     | mean x: 1748966726.0
[2025-06-03 12:42:52] 2025-06-03 16:42:38,466 | INFO     | mean y: 2215786.8985507246
[2025-06-03 12:42:52] 2025-06-03 16:42:38,466 | INFO     | -- intersect: -44852829050.164185
[2025-06-03 12:42:52] 2025-06-03 16:42:38,466 | INFO     | intersect: -44852829050.164185
[2025-06-03 12:42:52] 2025-06-03 16:42:38,466 | INFO     | chi2: 0.7452479514087228
[2025-06-03 12:42:52] 2025-06-03 16:42:38,466 | INFO     | -- intersect: -44852829050.164185
[2025-06-03 12:42:52] 2025-06-03 16:42:38,467 | INFO     | current memory leak: 25.65 B/s (using 69 data points, chi2=0.75)
[2025-06-03 12:42:52] 2025-06-03 16:42:38,467 | INFO     | ..............................
[2025-06-03 12:42:52] 2025-06-03 16:42:38,467 | INFO     | . Timing measurements:
[2025-06-03 12:42:52] 2025-06-03 16:42:38,467 | INFO     | . get job = 0 s
[2025-06-03 12:42:52] 2025-06-03 16:42:38,467 | INFO     | . initial setup = 2 s
[2025-06-03 12:42:52] 2025-06-03 16:42:38,468 | INFO     | . payload setup = 5 s
[2025-06-03 12:42:52] 2025-06-03 16:42:38,468 | INFO     | . stage-in = 0 s
[2025-06-03 12:42:52] 2025-06-03 16:42:38,468 | INFO     | . payload execution = 4606 s
[2025-06-03 12:42:52] 2025-06-03 16:42:38,468 | INFO     | . stage-out = 0 s
[2025-06-03 12:42:52] 2025-06-03 16:42:38,468 | INFO     | . log creation = 0 s
[2025-06-03 12:42:52] 2025-06-03 16:42:38,468 | INFO     | ..............................
[2025-06-03 12:42:52] 2025-06-03 16:42:38,575 | INFO     | 
[2025-06-03 12:42:52] 2025-06-03 16:42:38,575 | INFO     | job summary report
[2025-06-03 12:42:52] 2025-06-03 16:42:38,576 | INFO     | --------------------------------------------------
[2025-06-03 12:42:52] 2025-06-03 16:42:38,576 | INFO     | PanDA job id: 6677580102
[2025-06-03 12:42:52] 2025-06-03 16:42:38,576 | INFO     | task id: 45006595
[2025-06-03 12:42:52] 2025-06-03 16:42:38,576 | INFO     | errors: (none)
[2025-06-03 12:42:52] 2025-06-03 16:42:38,576 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 12:42:52] 2025-06-03 16:42:38,576 | INFO     | pilot state: finished 
[2025-06-03 12:42:52] 2025-06-03 16:42:38,576 | INFO     | transexitcode: 0
[2025-06-03 12:42:52] 2025-06-03 16:42:38,576 | INFO     | exeerrorcode: 0
[2025-06-03 12:42:52] 2025-06-03 16:42:38,577 | INFO     | exeerrordiag: 
[2025-06-03 12:42:52] 2025-06-03 16:42:38,577 | INFO     | exitcode: 0
[2025-06-03 12:42:52] 2025-06-03 16:42:38,577 | INFO     | exitmsg: OK
[2025-06-03 12:42:52] 2025-06-03 16:42:38,577 | INFO     | cpuconsumptiontime: 31341 s
[2025-06-03 12:42:52] 2025-06-03 16:42:38,577 | INFO     | nevents: 400
[2025-06-03 12:42:52] 2025-06-03 16:42:38,577 | INFO     | neventsw: 0
[2025-06-03 12:42:52] 2025-06-03 16:42:38,577 | INFO     | pid: 3262379
[2025-06-03 12:42:52] 2025-06-03 16:42:38,577 | INFO     | pgrp: 3262379
[2025-06-03 12:42:52] 2025-06-03 16:42:38,577 | INFO     | corecount: 8
[2025-06-03 12:42:52] 2025-06-03 16:42:38,578 | INFO     | event service: False
[2025-06-03 12:42:52] 2025-06-03 16:42:38,578 | INFO     | sizes: {0: 2404957, 1: 2405212, 5: 2405418, 12: 2405474, 4615: 2431615, 4616: 2431614, 4617: 2440795, 4621: 2440909}
[2025-06-03 12:42:52] 2025-06-03 16:42:38,578 | INFO     | --------------------------------------------------
[2025-06-03 12:42:52] 2025-06-03 16:42:38,578 | INFO     | 
[2025-06-03 12:42:52] 2025-06-03 16:42:38,578 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-03 12:42:52] 2025-06-03 16:42:38,594 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,594 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,595 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,595 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,595 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,595 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,595 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,595 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,596 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,596 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,596 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 12:42:52] 2025-06-03 16:42:38,596 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,597 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 12:42:52] 2025-06-03 16:42:38,597 | INFO     | job 6677580102 has completed (purged errors)
[2025-06-03 12:42:52] 2025-06-03 16:42:38,597 | INFO     | overall cleanup function is called
[2025-06-03 12:42:52] 2025-06-03 16:42:39,442 | WARNING  | process 3262379 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 12:42:52] 2025-06-03 16:42:39,605 | INFO     | --- collectZombieJob: --- 10, [3262379]
[2025-06-03 12:42:52] 2025-06-03 16:42:39,605 | INFO     | zombie collector waiting for pid 3262379
[2025-06-03 12:42:52] 2025-06-03 16:42:39,606 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 12:42:52] 2025-06-03 16:42:39,606 | INFO     | collected zombie processes
[2025-06-03 12:42:52] 2025-06-03 16:42:39,606 | INFO     | will attempt to kill all subprocesses of pid=3262379
[2025-06-03 12:42:52] 2025-06-03 16:42:39,749 | INFO     | using path: /tmp/boinchome/slots/3/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 12:42:52] 2025-06-03 16:42:40,184 | INFO     | process IDs to be killed: [3262379] (in reverse order)
[2025-06-03 12:42:52] 2025-06-03 16:42:40,236 | INFO     | number of running child processes to parent process 3262379: 1
[2025-06-03 12:42:52] 2025-06-03 16:42:40,237 | INFO     | maximum number of monitored processes: 6
[2025-06-03 12:42:52] 2025-06-03 16:42:40,237 | INFO     | aborting job monitoring since job object (job id=6677580102) has expired
[2025-06-03 12:42:52] 2025-06-03 16:42:40,254 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 12:42:52] 2025-06-03 16:42:40,255 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 12:42:52] 2025-06-03 16:42:40,263 | INFO     | did not find any defunct processes belonging to 3262379
[2025-06-03 12:42:52] 2025-06-03 16:42:40,270 | INFO     | did not find any defunct processes belonging to 3262379
[2025-06-03 12:42:52] 2025-06-03 16:42:40,270 | INFO     | ready for new job
[2025-06-03 12:42:52] 2025-06-03 16:42:40,270 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 12:42:52] 2025-06-03 16:42:40,272 | INFO     | **************************************
[2025-06-03 12:42:52] 2025-06-03 16:42:40,272 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 12:42:52] 2025-06-03 16:42:40,273 | INFO     | **************************************
[2025-06-03 12:42:52] 2025-06-03 16:42:40,273 | INFO     | 
[2025-06-03 12:42:52] 2025-06-03 16:42:40,287 | INFO     | architecture information:
[2025-06-03 12:42:52] 2025-06-03 16:42:40,288 | INFO     | executing command: cat /etc/os-release
[2025-06-03 12:42:52] 2025-06-03 16:42:40,299 | INFO     | cat /etc/os-release:
[2025-06-03 12:42:52] NAME="CentOS Linux"
[2025-06-03 12:42:52] VERSION="7 (Core)"
[2025-06-03 12:42:52] ID="centos"
[2025-06-03 12:42:52] ID_LIKE="rhel fedora"
[2025-06-03 12:42:52] VERSION_ID="7"
[2025-06-03 12:42:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 12:42:52] ANSI_COLOR="0;31"
[2025-06-03 12:42:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 12:42:52] HOME_URL="https://www.centos.org/"
[2025-06-03 12:42:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 12:42:52] 
[2025-06-03 12:42:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 12:42:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 12:42:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 12:42:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 12:42:52] 
[2025-06-03 12:42:52] 2025-06-03 16:42:40,300 | INFO     | **************************************
[2025-06-03 12:42:52] 2025-06-03 16:42:40,803 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-03 12:42:52] 2025-06-03 16:42:40,817 | INFO     | sufficient remaining disk space (74519150592 B)
[2025-06-03 12:42:52] 2025-06-03 16:42:40,817 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 12:42:52] 2025-06-03 16:42:40,818 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 12:42:52] 2025-06-03 16:42:40,818 | INFO     | update_server=False
[2025-06-03 12:42:52] 2025-06-03 16:42:40,818 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 12:42:52] 2025-06-03 16:42:40,818 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:42:52] 2025-06-03 16:42:40,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 12:42:52] 2025-06-03 16:42:40,818 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 12:42:52] 2025-06-03 16:42:40,819 | INFO     | will abort loop
[2025-06-03 12:42:52] 2025-06-03 16:42:40,819 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 12:42:52] 2025-06-03 16:42:40,820 | INFO     | all data control threads have been joined
[2025-06-03 12:42:52] 2025-06-03 16:42:40,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 12:42:52] 2025-06-03 16:42:40,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 12:42:52] 2025-06-03 16:42:41,563 | INFO     | all payload control threads have been joined
[2025-06-03 12:42:52] 2025-06-03 16:42:41,823 | INFO     | [job] retrieve thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:41,825 | INFO     | [job] job monitor thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:41,825 | INFO     | [data] control thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:41,854 | INFO     | [job] validate thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:41,864 | INFO     | all job control threads have been joined
[2025-06-03 12:42:52] 2025-06-03 16:42:42,145 | INFO     | [payload] failed_post thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:42,215 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:42,280 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 12:42:52] 2025-06-03 16:42:42,382 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:42,568 | INFO     | [payload] control thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:42,637 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:42,870 | INFO     | [job] control thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:42,899 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:43,068 | INFO     | [data] copytool_in thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:43,328 | INFO     | [payload] validate_post thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:43,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:42:52] 2025-06-03 16:42:44,280 | INFO     | [data] copytool_out thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:44,586 | INFO     | [job] queue monitor thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:44,825 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 12:42:52] 2025-06-03 16:42:46,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140632661002048)>', '<ExcThread(monitor, started 140631640889088)>']
[2025-06-03 12:42:52] 2025-06-03 16:42:46,842 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 12:42:52] 2025-06-03 16:42:46,842 | INFO     | [monitor] control thread has ended
[2025-06-03 12:42:52] 2025-06-03 16:42:51,811 | INFO     | all workflow threads have been joined
[2025-06-03 12:42:52] 2025-06-03 16:42:51,811 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 12:42:52] 2025-06-03 16:42:51,812 | INFO     | traces error code: 0
[2025-06-03 12:42:52] 2025-06-03 16:42:51,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 12:42:52] 2025-06-03 16:42:51,927 [wrapper] ==== pilot stdout END ====
[2025-06-03 12:42:52] 2025-06-03 16:42:51,929 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 12:42:52] 2025-06-03 16:42:51,931 [wrapper] pilotpid: 3255885
[2025-06-03 12:42:52] 2025-06-03 16:42:51,933 [wrapper] Pilot exit status: 0
[2025-06-03 12:42:52] 2025-06-03 16:42:51,942 [wrapper] pandaids: 6677580102
[2025-06-03 12:42:52] 2025-06-03 16:42:51,989 [wrapper] cleanup supervisor_pilot 3444818 3255886
[2025-06-03 12:42:52] 2025-06-03 16:42:51,991 [wrapper] Test setup, not cleaning
[2025-06-03 12:42:52] 2025-06-03 16:42:51,994 [wrapper] apfmon messages muted
[2025-06-03 12:42:52] 2025-06-03 16:42:51,996 [wrapper] ==== wrapper stdout END ====
[2025-06-03 12:42:52] 2025-06-03 16:42:51,998 [wrapper] ==== wrapper stderr END ====
[2025-06-03 12:42:52]  *** Error codes and diagnostics ***
[2025-06-03 12:42:52]     "exeErrorCode": 0,
[2025-06-03 12:42:52]     "exeErrorDiag": "",
[2025-06-03 12:42:52]     "pilotErrorCode": 0,
[2025-06-03 12:42:52]     "pilotErrorDiag": "",
[2025-06-03 12:42:52]  *** Listing of results directory ***
[2025-06-03 12:42:52] total 388940
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 06:57 pilot3.tar.gz
[2025-06-03 12:42:52] -rwx------. 1 boincer umatlas     37140 Jun  3 07:12 runpilot2-wrapper.sh
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 07:12 queuedata.json
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas       100 Jun  3 11:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 12:42:52] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 11:25 run_atlas
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas       105 Jun  3 11:25 job.xml
[2025-06-03 12:42:52] -rw-r--r--. 2 boincer umatlas 214491351 Jun  3 11:25 EVNT.45006593._001204.pool.root.1
[2025-06-03 12:42:52] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 11:25 start_atlas.sh
[2025-06-03 12:42:52] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 11:25 shared
[2025-06-03 12:42:52] -rw-r--r--. 2 boincer umatlas    508882 Jun  3 11:25 input.tar.gz
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas         0 Jun  3 11:25 boinc_lockfile
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 11:25 pandaJob.out
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas    983735 Jun  3 11:25 agis_schedconf.cvmfs.json
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas   1603667 Jun  3 11:25 agis_ddmendpoints.agis.ALL.json
[2025-06-03 12:42:52] drwx------. 4 boincer umatlas      4096 Jun  3 11:25 pilot3
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas      6673 Jun  3 12:36 init_data.xml
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas 178430197 Jun  3 12:41 HITS.45006595._030081.pool.root.1
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas       529 Jun  3 12:42 boinc_task_state.xml
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas      1032 Jun  3 12:42 memory_monitor_summary.json
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas    297629 Jun  3 12:42 log.45006595._030081.job.log.tgz.1
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas      7704 Jun  3 12:42 heartbeat.json
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas        95 Jun  3 12:42 pilot_heartbeat.json
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas        27 Jun  3 12:42 wrapper_checkpoint.txt
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 12:42 boinc_mmap_file
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas      4478 Jun  3 12:42 pilotlog.txt
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas    460069 Jun  3 12:42 log.45006595._030081.job.log.1
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas       357 Jun  3 12:42 output.list
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas       620 Jun  3 12:42 runtime_log
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas    778240 Jun  3 12:42 result.tar.gz
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas      8644 Jun  3 12:42 runtime_log.err
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas       647 Jun  3 12:42 aUaKDmWkeg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmvgjKDmYbScVm.diag
[2025-06-03 12:42:52] -rw-r--r--. 1 boincer umatlas     21465 Jun  3 12:42 stderr.txt
[2025-06-03 12:42:52] HITS file was successfully produced:
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas 178430197 Jun  3 12:41 shared/HITS.pool.root.1
[2025-06-03 12:42:52]  *** Contents of shared directory: ***
[2025-06-03 12:42:52] total 385000
[2025-06-03 12:42:52] -rw-r--r--. 2 boincer umatlas 214491351 Jun  3 11:25 ATLAS.root_0
[2025-06-03 12:42:52] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 11:25 start_atlas.sh
[2025-06-03 12:42:52] -rw-r--r--. 2 boincer umatlas    508882 Jun  3 11:25 input.tar.gz
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas 178430197 Jun  3 12:41 HITS.pool.root.1
[2025-06-03 12:42:52] -rw-------. 1 boincer umatlas    778240 Jun  3 12:42 result.tar.gz
12:42:54 (3252272): run_atlas exited; CPU time 31466.979115
12:42:54 (3252272): called boinc_finish(0)

</stderr_txt>
]]>

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