Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:31:47 (1777370): wrapper (7.7.26015): starting
11:31:47 (1777370): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:31:47] Arguments: --nthreads 8
[2025-06-03 11:31:47] Threads: 8
[2025-06-03 11:31:47] Checking for CVMFS
[2025-06-03 11:31:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:31:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:31:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:31:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:31:48] 2.12.6.0 956287 147025 213840 146748 1 61 18687930 32935937 3728 130560 0 382448032 99.654 358400478 26172 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 11:31:48] CVMFS is ok
[2025-06-03 11:31:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 11:31:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 11:31:48] Further information can be found at the LHC@home message board.
[2025-06-03 11:31:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:31:48] Checking for apptainer binary...
[2025-06-03 11:31:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:31:48] Running /usr/bin/apptainer --version
[2025-06-03 11:31:48] apptainer version 1.4.1-1.el9
[2025-06-03 11:31:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:31:48] c-6-4.aglt2.org
[2025-06-03 11:31:48] apptainer works
[2025-06-03 11:31:48] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:31:48] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:31:48] Starting ATLAS job with PandaID=6677580551
[2025-06-03 11:31:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:06:18]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:06:18]  filetype=log
[2025-06-03 13:06:18]  guid=7349f3dc-59f5-4cff-a200-6734f948bf23
[2025-06-03 13:06:18]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 13:06:18]  is_altstaged=None
[2025-06-03 13:06:18]  is_tar=False
[2025-06-03 13:06:18]  lfn=log.45006595._030361.job.log.tgz.1
[2025-06-03 13:06:18]  mtime=0
[2025-06-03 13:06:18]  protocol_id=None
[2025-06-03 13:06:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 13:06:18]  replicas=None
[2025-06-03 13:06:18]  scope=mc23_13p6TeV
[2025-06-03 13:06:18]  status=None
[2025-06-03 13:06:18]  status_code=0
[2025-06-03 13:06:18]  storage_token=
[2025-06-03 13:06:18]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6677580551/log.45006595._030361.job.log.tgz.1
[2025-06-03 13:06:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/97/log.45006595._030361.job.log.tgz.1
[2025-06-03 13:06:18]  workdir=None
[2025-06-03 13:06:18] ]
[2025-06-03 13:06:18] 2025-06-03 17:05:52,289 | INFO     | transferring file log.45006595._030361.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6677580551/log.45006595._030361.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 13:06:18] 2025-06-03 17:05:52,289 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6677580551/log.45006595._030361.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._030361.job
[2025-06-03 13:06:18] 2025-06-03 17:05:52,304 | INFO     | adding to output.list: log.45006595._030361.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/97/log.45006595._030361.job.log.tg
[2025-06-03 13:06:18] 2025-06-03 17:05:52,305 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 13:06:18] 2025-06-03 17:05:52,305 | INFO     | summary of transferred files:
[2025-06-03 13:06:18] 2025-06-03 17:05:52,305 | INFO     |  -- lfn=log.45006595._030361.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 13:06:18] 2025-06-03 17:05:52,305 | INFO     | stage-out finished correctly
[2025-06-03 13:06:18] 2025-06-03 17:05:52,412 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 13:06:18] 2025-06-03 17:05:54,482 | INFO     | monitor loop #417: job 0:6677580551 is in state 'finished'
[2025-06-03 13:06:18] 2025-06-03 17:05:54,483 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:06:18] 2025-06-03 17:05:55,161 | INFO     | job 6677580551 has state=finished
[2025-06-03 13:06:18] 2025-06-03 17:05:55,162 | INFO     | preparing for final server update for job 6677580551 in state='finished'
[2025-06-03 13:06:18] 2025-06-03 17:05:55,162 | INFO     | this job has now completed (state=finished)
[2025-06-03 13:06:18] 2025-06-03 17:05:55,162 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 13:06:18] 2025-06-03 17:05:55,163 | INFO     | log transfer has been attempted: DONE
[2025-06-03 13:06:18] 2025-06-03 17:05:55,163 | INFO     | job 6677580551 has finished - writing final server update
[2025-06-03 13:06:18] 2025-06-03 17:05:55,163 | INFO     | total number of processed events: 400 (read)
[2025-06-03 13:06:18] 2025-06-03 17:05:55,176 | INFO     | executing command: lscpu
[2025-06-03 13:06:18] 2025-06-03 17:05:55,241 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 13:06:18] 2025-06-03 17:05:56,985 | INFO     | monitor loop #418: job 0:6677580551 is in state 'finished'
[2025-06-03 13:06:18] 2025-06-03 17:05:56,986 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:06:18] 2025-06-03 17:05:58,545 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 13:06:18] 2025-06-03 17:05:58,545 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6677580551/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:06:18] 2025-06-03 17:05:58,546 | INFO     | extracted standard info from prmon json
[2025-06-03 13:06:18] 2025-06-03 17:05:58,546 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:06:18] 2025-06-03 17:05:58,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:06:18] 2025-06-03 17:05:58,547 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:06:18] 2025-06-03 17:05:58,547 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:06:18] 2025-06-03 17:05:58,550 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:06:18] 2025-06-03 17:05:58,550 | INFO     | sum of square deviations: 190403570.0
[2025-06-03 13:06:18] 2025-06-03 17:05:58,551 | INFO     | sum of deviations: 5504989773.999998
[2025-06-03 13:06:18] 2025-06-03 17:05:58,551 | INFO     | mean x: 1748967609.0
[2025-06-03 13:06:18] 2025-06-03 17:05:58,551 | INFO     | mean y: 2156540.5529411766
[2025-06-03 13:06:18] 2025-06-03 17:05:58,551 | INFO     | -- intersect: -50564378543.858696
[2025-06-03 13:06:18] 2025-06-03 17:05:58,551 | INFO     | intersect: -50564378543.858696
[2025-06-03 13:06:18] 2025-06-03 17:05:58,552 | INFO     | chi2: 1.1506011740968887
[2025-06-03 13:06:18] 2025-06-03 17:05:58,552 | INFO     | -- intersect: -50564378543.858696
[2025-06-03 13:06:18] 2025-06-03 17:05:58,552 | INFO     | current memory leak: 28.91 B/s (using 85 data points, chi2=1.15)
[2025-06-03 13:06:18] 2025-06-03 17:05:58,552 | INFO     | ..............................
[2025-06-03 13:06:18] 2025-06-03 17:05:58,553 | INFO     | . Timing measurements:
[2025-06-03 13:06:18] 2025-06-03 17:05:58,553 | INFO     | . get job = 0 s
[2025-06-03 13:06:18] 2025-06-03 17:05:58,553 | INFO     | . initial setup = 2 s
[2025-06-03 13:06:18] 2025-06-03 17:05:58,553 | INFO     | . payload setup = 5 s
[2025-06-03 13:06:18] 2025-06-03 17:05:58,553 | INFO     | . stage-in = 0 s
[2025-06-03 13:06:18] 2025-06-03 17:05:58,553 | INFO     | . payload execution = 5607 s
[2025-06-03 13:06:18] 2025-06-03 17:05:58,553 | INFO     | . stage-out = 1 s
[2025-06-03 13:06:18] 2025-06-03 17:05:58,553 | INFO     | . log creation = 0 s
[2025-06-03 13:06:18] 2025-06-03 17:05:58,553 | INFO     | ..............................
[2025-06-03 13:06:18] 2025-06-03 17:05:59,120 | INFO     | 
[2025-06-03 13:06:18] 2025-06-03 17:05:59,121 | INFO     | job summary report
[2025-06-03 13:06:18] 2025-06-03 17:05:59,121 | INFO     | --------------------------------------------------
[2025-06-03 13:06:18] 2025-06-03 17:05:59,121 | INFO     | PanDA job id: 6677580551
[2025-06-03 13:06:18] 2025-06-03 17:05:59,121 | INFO     | task id: 45006595
[2025-06-03 13:06:18] 2025-06-03 17:05:59,121 | INFO     | errors: (none)
[2025-06-03 13:06:18] 2025-06-03 17:05:59,121 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:06:18] 2025-06-03 17:05:59,122 | INFO     | pilot state: finished 
[2025-06-03 13:06:18] 2025-06-03 17:05:59,122 | INFO     | transexitcode: 0
[2025-06-03 13:06:18] 2025-06-03 17:05:59,122 | INFO     | exeerrorcode: 0
[2025-06-03 13:06:18] 2025-06-03 17:05:59,122 | INFO     | exeerrordiag: 
[2025-06-03 13:06:18] 2025-06-03 17:05:59,122 | INFO     | exitcode: 0
[2025-06-03 13:06:18] 2025-06-03 17:05:59,122 | INFO     | exitmsg: OK
[2025-06-03 13:06:18] 2025-06-03 17:05:59,122 | INFO     | cpuconsumptiontime: 38301 s
[2025-06-03 13:06:18] 2025-06-03 17:05:59,122 | INFO     | nevents: 400
[2025-06-03 13:06:18] 2025-06-03 17:05:59,122 | INFO     | neventsw: 0
[2025-06-03 13:06:18] 2025-06-03 17:05:59,123 | INFO     | pid: 1790102
[2025-06-03 13:06:18] 2025-06-03 17:05:59,123 | INFO     | pgrp: 1790102
[2025-06-03 13:06:18] 2025-06-03 17:05:59,123 | INFO     | corecount: 8
[2025-06-03 13:06:18] 2025-06-03 17:05:59,123 | INFO     | event service: False
[2025-06-03 13:06:18] 2025-06-03 17:05:59,123 | INFO     | sizes: {0: 2405133, 4: 2405339, 11: 2405367, 5617: 2431911, 5620: 2440908, 5627: 2441022}
[2025-06-03 13:06:18] 2025-06-03 17:05:59,123 | INFO     | --------------------------------------------------
[2025-06-03 13:06:18] 2025-06-03 17:05:59,123 | INFO     | 
[2025-06-03 13:06:18] 2025-06-03 17:05:59,123 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-03 13:06:18] 2025-06-03 17:05:59,140 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,141 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,141 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,141 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,141 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,141 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,141 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,141 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,141 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,142 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,142 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,142 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,142 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,142 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,142 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,142 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,142 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,142 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:06:18] 2025-06-03 17:05:59,143 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,143 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:06:18] 2025-06-03 17:05:59,143 | INFO     | job 6677580551 has completed (purged errors)
[2025-06-03 13:06:18] 2025-06-03 17:05:59,143 | INFO     | overall cleanup function is called
[2025-06-03 13:06:18] 2025-06-03 17:06:00,151 | INFO     | --- collectZombieJob: --- 10, [1790102]
[2025-06-03 13:06:18] 2025-06-03 17:06:00,151 | INFO     | zombie collector waiting for pid 1790102
[2025-06-03 13:06:18] 2025-06-03 17:06:00,151 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:06:18] 2025-06-03 17:06:00,151 | INFO     | collected zombie processes
[2025-06-03 13:06:18] 2025-06-03 17:06:00,152 | INFO     | will attempt to kill all subprocesses of pid=1790102
[2025-06-03 13:06:18] 2025-06-03 17:06:00,410 | INFO     | process IDs to be killed: [1790102] (in reverse order)
[2025-06-03 13:06:18] 2025-06-03 17:06:00,482 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:06:18] 2025-06-03 17:06:00,482 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:06:18] 2025-06-03 17:06:00,490 | INFO     | did not find any defunct processes belonging to 1790102
[2025-06-03 13:06:18] 2025-06-03 17:06:00,499 | INFO     | did not find any defunct processes belonging to 1790102
[2025-06-03 13:06:18] 2025-06-03 17:06:00,500 | INFO     | ready for new job
[2025-06-03 13:06:18] 2025-06-03 17:06:00,501 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:06:18] 2025-06-03 17:06:00,503 | INFO     | **************************************
[2025-06-03 13:06:18] 2025-06-03 17:06:00,503 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:06:18] 2025-06-03 17:06:00,503 | INFO     | **************************************
[2025-06-03 13:06:18] 2025-06-03 17:06:00,503 | INFO     | 
[2025-06-03 13:06:18] 2025-06-03 17:06:00,517 | INFO     | architecture information:
[2025-06-03 13:06:18] 2025-06-03 17:06:00,517 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:06:18] 2025-06-03 17:06:00,530 | INFO     | cat /etc/os-release:
[2025-06-03 13:06:18] NAME="CentOS Linux"
[2025-06-03 13:06:18] VERSION="7 (Core)"
[2025-06-03 13:06:18] ID="centos"
[2025-06-03 13:06:18] ID_LIKE="rhel fedora"
[2025-06-03 13:06:18] VERSION_ID="7"
[2025-06-03 13:06:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:06:18] ANSI_COLOR="0;31"
[2025-06-03 13:06:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:06:18] HOME_URL="https://www.centos.org/"
[2025-06-03 13:06:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:06:18] 
[2025-06-03 13:06:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:06:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:06:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:06:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:06:18] 
[2025-06-03 13:06:18] 2025-06-03 17:06:00,530 | INFO     | **************************************
[2025-06-03 13:06:18] 2025-06-03 17:06:01,033 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-03 13:06:18] 2025-06-03 17:06:01,047 | INFO     | sufficient remaining disk space (74468818944 B)
[2025-06-03 13:06:18] 2025-06-03 17:06:01,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:06:18] 2025-06-03 17:06:01,047 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:06:18] 2025-06-03 17:06:01,048 | INFO     | update_server=False
[2025-06-03 13:06:18] 2025-06-03 17:06:01,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:06:18] 2025-06-03 17:06:01,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:06:18] 2025-06-03 17:06:01,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:06:18] 2025-06-03 17:06:01,048 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 13:06:18] 2025-06-03 17:06:01,049 | INFO     | aborting loop
[2025-06-03 13:06:18] 2025-06-03 17:06:01,050 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:06:18] 2025-06-03 17:06:01,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:06:18] 2025-06-03 17:06:01,050 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:06:18] 2025-06-03 17:06:01,174 | INFO     | all data control threads have been joined
[2025-06-03 13:06:18] 2025-06-03 17:06:01,794 | INFO     | all payload control threads have been joined
[2025-06-03 13:06:18] 2025-06-03 17:06:02,052 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:02,055 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:02,106 | INFO     | all job control threads have been joined
[2025-06-03 13:06:18] 2025-06-03 17:06:02,180 | INFO     | [data] control thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:02,280 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:02,389 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:02,410 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:02,799 | INFO     | [payload] control thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:02,888 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:02,892 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:03,025 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:06:18] 2025-06-03 17:06:03,050 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:03,108 | INFO     | [job] control thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:03,402 | INFO     | [job] validate thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:03,434 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:03,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:06:18] 2025-06-03 17:06:04,687 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:07,031 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:11,586 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:06:18] 2025-06-03 17:06:12,592 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:06:18] 2025-06-03 17:06:13,031 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140505845765952)>', '<ExcThread(monitor, started 140505216182016)>']
[2025-06-03 13:06:18] 2025-06-03 17:06:13,108 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:06:18] 2025-06-03 17:06:13,108 | INFO     | [monitor] control thread has ended
[2025-06-03 13:06:18] 2025-06-03 17:06:18,056 | INFO     | all workflow threads have been joined
[2025-06-03 13:06:18] 2025-06-03 17:06:18,057 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:06:18] 2025-06-03 17:06:18,057 | INFO     | traces error code: 0
[2025-06-03 13:06:18] 2025-06-03 17:06:18,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:06:18] 2025-06-03 17:06:18,202 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:06:18] 2025-06-03 17:06:18,205 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:06:18] 2025-06-03 17:06:18,207 [wrapper] pilotpid: 1780971
[2025-06-03 13:06:18] 2025-06-03 17:06:18,209 [wrapper] Pilot exit status: 0
[2025-06-03 13:06:18] 2025-06-03 17:06:18,216 [wrapper] pandaids: 6677580551
[2025-06-03 13:06:18] 2025-06-03 17:06:18,264 [wrapper] cleanup supervisor_pilot 2023778 1780972
[2025-06-03 13:06:18] 2025-06-03 17:06:18,267 [wrapper] Test setup, not cleaning
[2025-06-03 13:06:18] 2025-06-03 17:06:18,269 [wrapper] apfmon messages muted
[2025-06-03 13:06:18] 2025-06-03 17:06:18,272 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:06:18] 2025-06-03 17:06:18,274 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:06:18]  *** Error codes and diagnostics ***
[2025-06-03 13:06:18]     "exeErrorCode": 0,
[2025-06-03 13:06:18]     "exeErrorDiag": "",
[2025-06-03 13:06:18]     "pilotErrorCode": 0,
[2025-06-03 13:06:18]     "pilotErrorDiag": "",
[2025-06-03 13:06:18]  *** Listing of results directory ***
[2025-06-03 13:06:18] total 385660
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 06:57 pilot3.tar.gz
[2025-06-03 13:06:18] -rwx------. 1 boincer umatlas     37140 Jun  3 07:16 runpilot2-wrapper.sh
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 07:16 queuedata.json
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas       100 Jun  3 11:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:06:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 11:31 run_atlas
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas       105 Jun  3 11:31 job.xml
[2025-06-03 13:06:18] -rw-r--r--. 2 boincer umatlas 214178546 Jun  3 11:31 EVNT.45006593._001216.pool.root.1
[2025-06-03 13:06:18] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 11:31 shared
[2025-06-03 13:06:18] -rw-r--r--. 2 boincer umatlas    508875 Jun  3 11:31 input.tar.gz
[2025-06-03 13:06:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 11:31 start_atlas.sh
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas         0 Jun  3 11:31 boinc_lockfile
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas      2524 Jun  3 11:31 pandaJob.out
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas    983735 Jun  3 11:31 agis_schedconf.cvmfs.json
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas   1603667 Jun  3 11:31 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:06:18] drwx------. 4 boincer umatlas      4096 Jun  3 11:31 pilot3
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas      6672 Jun  3 13:02 init_data.xml
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas 175183700 Jun  3 13:05 HITS.45006595._030361.pool.root.1
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas       529 Jun  3 13:05 boinc_task_state.xml
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas        95 Jun  3 13:05 pilot_heartbeat.json
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas      1030 Jun  3 13:05 memory_monitor_summary.json
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas    311948 Jun  3 13:05 log.45006595._030361.job.log.tgz.1
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas      7700 Jun  3 13:05 heartbeat.json
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 13:06 boinc_mmap_file
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas        27 Jun  3 13:06 wrapper_checkpoint.txt
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas      4548 Jun  3 13:06 pilotlog.txt
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas    547785 Jun  3 13:06 log.45006595._030361.job.log.1
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas       357 Jun  3 13:06 output.list
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas       620 Jun  3 13:06 runtime_log
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas    880640 Jun  3 13:06 result.tar.gz
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas       648 Jun  3 13:06 yn4LDmEoeg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnhjKDmdbxHYm.diag
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas      8644 Jun  3 13:06 runtime_log.err
[2025-06-03 13:06:18] -rw-r--r--. 1 boincer umatlas     21193 Jun  3 13:06 stderr.txt
[2025-06-03 13:06:18] HITS file was successfully produced:
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas 175183700 Jun  3 13:05 shared/HITS.pool.root.1
[2025-06-03 13:06:18]  *** Contents of shared directory: ***
[2025-06-03 13:06:18] total 381620
[2025-06-03 13:06:18] -rw-r--r--. 2 boincer umatlas 214178546 Jun  3 11:31 ATLAS.root_0
[2025-06-03 13:06:18] -rw-r--r--. 2 boincer umatlas    508875 Jun  3 11:31 input.tar.gz
[2025-06-03 13:06:18] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 11:31 start_atlas.sh
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas 175183700 Jun  3 13:05 HITS.pool.root.1
[2025-06-03 13:06:18] -rw-------. 1 boincer umatlas    880640 Jun  3 13:06 result.tar.gz
13:06:19 (1777370): run_atlas exited; CPU time 38442.722449
13:06:19 (1777370): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN