Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:34:06 (26619): wrapper (7.7.26015): starting
00:34:06 (26619): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 00:34:06] Arguments: --nthreads 8
[2025-06-04 00:34:06] Threads: 8
[2025-06-04 00:34:06] Checking for CVMFS
[2025-06-04 00:34:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 00:34:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 00:34:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 00:34:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 00:34:08] 2.11.2.0 15360 32368 101696 146760 0 14 12718456 25165824 3512 130560 0 16666497 99.772 18803880 2128 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 00:34:08] CVMFS is ok
[2025-06-04 00:34:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 00:34:08] Checking for apptainer binary...
[2025-06-04 00:34:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 00:34:08] Running /usr/bin/apptainer --version
[2025-06-04 00:34:08] apptainer version 1.3.2-1.el7
[2025-06-04 00:34:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 00:34:22] cg-vwn250.simple-grid.lan
[2025-06-04 00:34:22] apptainer works
[2025-06-04 00:57:30] Set ATHENA_PROC_NUMBER=8
[2025-06-04 00:57:30] Set ATHENA_CORE_NUMBER=8
[2025-06-04 00:57:30] Starting ATLAS job with PandaID=6677619406
[2025-06-04 00:57:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:10:30]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:10:30] 2025-06-04 02:53:00,054 | INFO     | extracted standard info from prmon json
[2025-06-04 05:10:30] 2025-06-04 02:53:00,054 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 05:10:30] 2025-06-04 02:53:00,054 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 05:10:30] 2025-06-04 02:53:00,055 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 05:10:30] 2025-06-04 02:53:00,055 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 05:10:30] 2025-06-04 02:53:00,060 | INFO     | fitting pss+swap vs Time
[2025-06-04 05:10:30] 2025-06-04 02:53:00,061 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,063 | INFO     | sum of deviations: 76175317699.99997
[2025-06-04 05:10:30] 2025-06-04 02:53:00,063 | INFO     | mean x: 1748998773.0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,063 | INFO     | mean y: 2418583.2511415523
[2025-06-04 05:10:30] 2025-06-04 02:53:00,064 | INFO     | -- intersect: -40904999156.92748
[2025-06-04 05:10:30] 2025-06-04 02:53:00,064 | INFO     | intersect: -40904999156.92748
[2025-06-04 05:10:30] 2025-06-04 02:53:00,064 | INFO     | chi2: 5.852121238785393
[2025-06-04 05:10:30] 2025-06-04 02:53:00,065 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 05:10:30] 2025-06-04 02:53:00,067 | INFO     | sum of deviations: 89526990014.0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,067 | INFO     | mean x: 1748998620.5
[2025-06-04 05:10:30] 2025-06-04 02:53:00,067 | INFO     | mean y: 2427723.9065420562
[2025-06-04 05:10:30] 2025-06-04 02:53:00,067 | INFO     | -- intersect: -51524374357.058876
[2025-06-04 05:10:30] 2025-06-04 02:53:00,067 | INFO     | intersect: -51524374357.058876
[2025-06-04 05:10:30] 2025-06-04 02:53:00,067 | INFO     | chi2: 5.026838965791303
[2025-06-04 05:10:30] 2025-06-04 02:53:00,068 | INFO     | current chi2=5.026838965791303 (change=14.102275727380134 %)
[2025-06-04 05:10:30] 2025-06-04 02:53:00,068 | INFO     | right removable region: 213
[2025-06-04 05:10:30] 2025-06-04 02:53:00,068 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 05:10:30] 2025-06-04 02:53:00,070 | INFO     | sum of deviations: 3066583856.500004
[2025-06-04 05:10:30] 2025-06-04 02:53:00,070 | INFO     | mean x: 1748998925.5
[2025-06-04 05:10:30] 2025-06-04 02:53:00,070 | INFO     | mean y: 2469648.11682243
[2025-06-04 05:10:30] 2025-06-04 02:53:00,070 | INFO     | -- intersect: -1762487343.8330076
[2025-06-04 05:10:30] 2025-06-04 02:53:00,071 | INFO     | intersect: -1762487343.8330076
[2025-06-04 05:10:30] 2025-06-04 02:53:00,071 | INFO     | chi2: 1.3802175245185346
[2025-06-04 05:10:30] 2025-06-04 02:53:00,071 | INFO     | current chi2=1.3802175245185346 (change=76.41509004681868 %)
[2025-06-04 05:10:30] 2025-06-04 02:53:00,072 | INFO     | sum of square deviations: 2830787960.0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,073 | INFO     | sum of deviations: -13995194864.0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,074 | INFO     | mean x: 1748999078.0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,074 | INFO     | mean y: 2482023.6028708136
[2025-06-04 05:10:30] 2025-06-04 02:53:00,074 | INFO     | -- intersect: 8649397037.882618
[2025-06-04 05:10:30] 2025-06-04 02:53:00,074 | INFO     | intersect: 8649397037.882618
[2025-06-04 05:10:30] 2025-06-04 02:53:00,074 | INFO     | chi2: 0.9781984281097976
[2025-06-04 05:10:30] 2025-06-04 02:53:00,074 | INFO     | current chi2=0.9781984281097976 (change=29.127227358526298 %)
[2025-06-04 05:10:30] 2025-06-04 02:53:00,075 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,076 | INFO     | sum of deviations: -21593498824.0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,077 | INFO     | mean x: 1748999230.5
[2025-06-04 05:10:30] 2025-06-04 02:53:00,077 | INFO     | mean y: 2487818.911764706
[2025-06-04 05:10:30] 2025-06-04 02:53:00,077 | INFO     | -- intersect: 14349258130.070341
[2025-06-04 05:10:30] 2025-06-04 02:53:00,077 | INFO     | intersect: 14349258130.070341
[2025-06-04 05:10:30] 2025-06-04 02:53:00,077 | INFO     | chi2: 0.903675176168836
[2025-06-04 05:10:30] 2025-06-04 02:53:00,077 | INFO     | current chi2=0.903675176168836 (change=7.6184186970086625 %)
[2025-06-04 05:10:30] 2025-06-04 02:53:00,078 | INFO     | left removable region: 30
[2025-06-04 05:10:30] 2025-06-04 02:53:00,079 | INFO     | sum of square deviations: 1900284932.0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,080 | INFO     | sum of deviations: -7280395323.000002
[2025-06-04 05:10:30] 2025-06-04 02:53:00,080 | INFO     | mean x: 1748999505.0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,080 | INFO     | mean y: 2499639.841530055
[2025-06-04 05:10:30] 2025-06-04 02:53:00,081 | INFO     | -- intersect: 6703288348.790424
[2025-06-04 05:10:30] 2025-06-04 02:53:00,081 | INFO     | intersect: 6703288348.790424
[2025-06-04 05:10:30] 2025-06-04 02:53:00,081 | INFO     | chi2: 0.0052403993022456154
[2025-06-04 05:10:30] 2025-06-04 02:53:00,081 | INFO     | -- intersect: 6703288348.790424
[2025-06-04 05:10:30] 2025-06-04 02:53:00,081 | INFO     | current memory leak: -3.83 B/s (using 183 data points, chi2=0.01)
[2025-06-04 05:10:30] 2025-06-04 02:53:00,083 | INFO     | ..............................
[2025-06-04 05:10:30] 2025-06-04 02:53:00,083 | INFO     | . Timing measurements:
[2025-06-04 05:10:30] 2025-06-04 02:53:00,083 | INFO     | . get job = 0 s
[2025-06-04 05:10:30] 2025-06-04 02:53:00,083 | INFO     | . initial setup = 3 s
[2025-06-04 05:10:30] 2025-06-04 02:53:00,083 | INFO     | . payload setup = 148 s
[2025-06-04 05:10:30] 2025-06-04 02:53:00,083 | INFO     | . stage-in = 0 s
[2025-06-04 05:10:30] 2025-06-04 02:53:00,083 | INFO     | . payload execution = 13502 s
[2025-06-04 05:10:30] 2025-06-04 02:53:00,083 | INFO     | . stage-out = 2 s
[2025-06-04 05:10:30] 2025-06-04 02:53:00,083 | INFO     | . log creation = 0 s
[2025-06-04 05:10:30] 2025-06-04 02:53:00,084 | INFO     | ..............................
[2025-06-04 05:10:30] 2025-06-04 02:53:00,240 | INFO     | 
[2025-06-04 05:10:30] 2025-06-04 02:53:00,240 | INFO     | job summary report
[2025-06-04 05:10:30] 2025-06-04 02:53:00,240 | INFO     | --------------------------------------------------
[2025-06-04 05:10:30] 2025-06-04 02:53:00,240 | INFO     | PanDA job id: 6677619406
[2025-06-04 05:10:30] 2025-06-04 02:53:00,241 | INFO     | task id: 45006595
[2025-06-04 05:10:30] 2025-06-04 02:53:00,241 | INFO     | errors: (none)
[2025-06-04 05:10:30] 2025-06-04 02:53:00,241 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:10:30] 2025-06-04 02:53:00,241 | INFO     | pilot state: finished 
[2025-06-04 05:10:30] 2025-06-04 02:53:00,241 | INFO     | transexitcode: 0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,241 | INFO     | exeerrorcode: 0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,241 | INFO     | exeerrordiag: 
[2025-06-04 05:10:30] 2025-06-04 02:53:00,241 | INFO     | exitcode: 0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,241 | INFO     | exitmsg: OK
[2025-06-04 05:10:30] 2025-06-04 02:53:00,242 | INFO     | cpuconsumptiontime: 49137 s
[2025-06-04 05:10:30] 2025-06-04 02:53:00,242 | INFO     | nevents: 400
[2025-06-04 05:10:30] 2025-06-04 02:53:00,242 | INFO     | neventsw: 0
[2025-06-04 05:10:30] 2025-06-04 02:53:00,242 | INFO     | pid: 23641
[2025-06-04 05:10:30] 2025-06-04 02:53:00,242 | INFO     | pgrp: 23641
[2025-06-04 05:10:30] 2025-06-04 02:53:00,242 | INFO     | corecount: 8
[2025-06-04 05:10:30] 2025-06-04 02:53:00,242 | INFO     | event service: False
[2025-06-04 05:10:30] 2025-06-04 02:53:00,242 | INFO     | sizes: {0: 2404958, 1: 2405213, 2: 2405241, 12: 2405241, 23: 2405269, 34: 2405297, 45: 2405453, 55: 2405481, 66: 2405509, 77: 2405537, 87: 2405593, 89: 2406107, 98
[2025-06-04 05:10:30] 2025-06-04 02:53:00,242 | INFO     | --------------------------------------------------
[2025-06-04 05:10:30] 2025-06-04 02:53:00,243 | INFO     | 
[2025-06-04 05:10:30] 2025-06-04 02:53:00,243 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-06-04 05:10:30] 2025-06-04 02:53:00,645 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,645 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,645 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,646 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,646 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,646 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,646 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,646 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,646 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,646 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,646 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,647 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,647 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,647 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,647 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,647 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,647 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,647 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:10:30] 2025-06-04 02:53:00,647 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,648 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:10:30] 2025-06-04 02:53:00,648 | INFO     | job 6677619406 has completed (purged errors)
[2025-06-04 05:10:30] 2025-06-04 02:53:00,648 | INFO     | overall cleanup function is called
[2025-06-04 05:10:30] 2025-06-04 02:53:01,658 | INFO     | --- collectZombieJob: --- 10, [23641]
[2025-06-04 05:10:30] 2025-06-04 02:53:01,658 | INFO     | zombie collector waiting for pid 23641
[2025-06-04 05:10:30] 2025-06-04 02:53:01,658 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:10:30] 2025-06-04 02:53:01,659 | INFO     | collected zombie processes
[2025-06-04 05:10:30] 2025-06-04 02:53:01,659 | INFO     | will attempt to kill all subprocesses of pid=23641
[2025-06-04 05:10:30] 2025-06-04 02:53:01,773 | INFO     | process IDs to be killed: [23641] (in reverse order)
[2025-06-04 05:10:30] 2025-06-04 02:53:02,209 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:10:30] 2025-06-04 02:53:02,210 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:10:30] 2025-06-04 02:53:02,214 | INFO     | did not find any defunct processes belonging to 23641
[2025-06-04 05:10:30] 2025-06-04 02:53:02,217 | INFO     | did not find any defunct processes belonging to 23641
[2025-06-04 05:10:30] 2025-06-04 02:53:02,217 | INFO     | ready for new job
[2025-06-04 05:10:30] 2025-06-04 02:53:02,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:10:30] 2025-06-04 02:53:02,222 | INFO     | **************************************
[2025-06-04 05:10:30] 2025-06-04 02:53:02,222 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:10:30] 2025-06-04 02:53:02,222 | INFO     | **************************************
[2025-06-04 05:10:30] 2025-06-04 02:53:02,222 | INFO     | 
[2025-06-04 05:10:30] 2025-06-04 02:53:02,223 | INFO     | pilot is running in a VM
[2025-06-04 05:10:30] 2025-06-04 02:53:02,223 | INFO     | architecture information:
[2025-06-04 05:10:30] 2025-06-04 02:53:02,224 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:10:30] 2025-06-04 02:53:02,294 | INFO     | cat /etc/os-release:
[2025-06-04 05:10:30] NAME="CentOS Linux"
[2025-06-04 05:10:30] VERSION="7 (Core)"
[2025-06-04 05:10:30] ID="centos"
[2025-06-04 05:10:30] ID_LIKE="rhel fedora"
[2025-06-04 05:10:30] VERSION_ID="7"
[2025-06-04 05:10:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:10:30] ANSI_COLOR="0;31"
[2025-06-04 05:10:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:10:30] HOME_URL="https://www.centos.org/"
[2025-06-04 05:10:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:10:30] 
[2025-06-04 05:10:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:10:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:10:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:10:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:10:30] 
[2025-06-04 05:10:30] 2025-06-04 02:53:02,294 | INFO     | **************************************
[2025-06-04 05:10:30] 2025-06-04 02:53:02,798 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-06-04 05:10:30] 2025-06-04 02:53:03,085 | INFO     | sufficient remaining disk space (496930652160 B)
[2025-06-04 05:10:30] 2025-06-04 02:53:03,086 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:10:30] 2025-06-04 02:53:03,086 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:10:30] 2025-06-04 02:53:03,086 | INFO     | update_server=False
[2025-06-04 05:10:30] 2025-06-04 02:53:03,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:10:30] 2025-06-04 02:53:03,086 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:10:30] 2025-06-04 02:53:03,087 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 05:10:30] 2025-06-04 02:53:03,087 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:10:30] 2025-06-04 02:53:03,087 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:10:30] 2025-06-04 02:53:03,088 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:10:30] 2025-06-04 02:53:03,090 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:10:30] 2025-06-04 02:53:03,127 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:10:30] 2025-06-04 02:53:03,127 | INFO     | aborting loop
[2025-06-04 05:10:30] 2025-06-04 02:53:04,092 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:04,123 | INFO     | all data control threads have been joined
[2025-06-04 05:10:30] 2025-06-04 02:53:04,133 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:04,240 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:04,339 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:04,350 | INFO     | all payload control threads have been joined
[2025-06-04 05:10:30] 2025-06-04 02:53:04,469 | INFO     | [job] validate thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:04,556 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:04,594 | INFO     | all job control threads have been joined
[2025-06-04 05:10:30] 2025-06-04 02:53:05,025 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:05,101 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:05,129 | INFO     | [data] control thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:05,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:10:30] 2025-06-04 02:53:05,264 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:05,296 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:05,356 | INFO     | [payload] control thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:05,440 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:05,600 | INFO     | [job] control thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:06,265 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:07,095 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:10:30] 2025-06-04 02:53:08,350 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139886074754880)>', '<ExcThread(monitor, started 139885759403776)>']
[2025-06-04 05:10:30] 2025-06-04 02:53:09,124 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:10:30] 2025-06-04 02:53:09,124 | INFO     | [monitor] control thread has ended
[2025-06-04 05:10:30] 2025-06-04 02:53:13,376 | INFO     | all workflow threads have been joined
[2025-06-04 05:10:30] 2025-06-04 02:53:13,376 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:10:30] 2025-06-04 02:53:13,376 | INFO     | traces error code: 0
[2025-06-04 05:10:30] 2025-06-04 02:53:13,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:10:30] 2025-06-04 02:53:13,644 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:10:30] 2025-06-04 02:53:13,719 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:10:30] 2025-06-04 02:53:13,814 [wrapper] pilotpid: 9080
[2025-06-04 05:10:30] 2025-06-04 02:53:13,919 [wrapper] Pilot exit status: 0
[2025-06-04 05:10:30] 2025-06-04 02:53:14,482 [wrapper] pandaids: 6677619406
[2025-06-04 05:10:30] 2025-06-04 02:53:15,502 [wrapper] cleanup supervisor_pilot 25801 9081
[2025-06-04 05:10:30] 2025-06-04 02:53:15,565 [wrapper] Test setup, not cleaning
[2025-06-04 05:10:30] 2025-06-04 02:53:15,630 [wrapper] apfmon messages muted
[2025-06-04 05:10:30] 2025-06-04 02:53:15,724 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:10:30] 2025-06-04 02:53:15,785 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:10:30]  *** Error codes and diagnostics ***
[2025-06-04 05:10:30]     "exeErrorCode": 0,
[2025-06-04 05:10:30]     "exeErrorDiag": "",
[2025-06-04 05:10:30]     "pilotErrorCode": 0,
[2025-06-04 05:10:30]     "pilotErrorDiag": "",
[2025-06-04 05:10:30]  *** Listing of results directory ***
[2025-06-04 05:10:30] total 392072
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc    495897 Jun  3 14:33 pilot3.tar.gz
[2025-06-04 05:10:30] -rwx------. 1 boinc boinc     37140 Jun  3 14:34 runpilot2-wrapper.sh
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc      5111 Jun  3 14:34 queuedata.json
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc       100 Jun  4 00:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:10:30] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 00:34 run_atlas
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc       105 Jun  4 00:34 job.xml
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc      6393 Jun  4 00:34 init_data.xml
[2025-06-04 05:10:30] -rw-r--r--. 2 boinc boinc 216309999 Jun  4 00:34 EVNT.45006593._001313.pool.root.1
[2025-06-04 05:10:30] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:34 start_atlas.sh
[2025-06-04 05:10:30] drwxrwx--x. 2 boinc boinc        68 Jun  4 00:34 shared
[2025-06-04 05:10:30] -rw-r--r--. 2 boinc boinc    508882 Jun  4 00:34 input.tar.gz
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc         0 Jun  4 00:34 boinc_lockfile
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc      2525 Jun  4 00:34 pandaJob.out
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc    986861 Jun  4 01:00 agis_schedconf.cvmfs.json
[2025-06-04 05:10:30] drwx------. 4 boinc boinc      4096 Jun  4 01:00 pilot3
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc 178194696 Jun  4 04:50 HITS.45006595._032626.pool.root.1
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc       531 Jun  4 04:50 boinc_task_state.xml
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc      1019 Jun  4 04:51 memory_monitor_summary.json
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc   1603667 Jun  4 04:51 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc    379400 Jun  4 04:51 log.45006595._032626.job.log.tgz.1
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc        95 Jun  4 04:52 pilot_heartbeat.json
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc      7691 Jun  4 04:53 heartbeat.json
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc      4540 Jun  4 04:53 pilotlog.txt
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc   1199071 Jun  4 04:53 log.45006595._032626.job.log.1
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc       357 Jun  4 04:53 output.list
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc       620 Jun  4 04:53 runtime_log
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc   1597440 Jun  4 04:53 result.tar.gz
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc      8673 Jun  4 04:53 runtime_log.err
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc       657 Jun  4 04:53 qobNDmK1fg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmy7jKDmdClRmn.diag
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc      8192 Jun  4 05:10 boinc_mmap_file
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc        28 Jun  4 05:10 wrapper_checkpoint.txt
[2025-06-04 05:10:30] -rw-r--r--. 1 boinc boinc     20511 Jun  4 05:10 stderr.txt
[2025-06-04 05:10:30] HITS file was successfully produced:
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc 178194696 Jun  4 04:50 shared/HITS.pool.root.1
[2025-06-04 05:10:30]  *** Contents of shared directory: ***
[2025-06-04 05:10:30] total 387340
[2025-06-04 05:10:30] -rw-r--r--. 2 boinc boinc 216309999 Jun  4 00:34 ATLAS.root_0
[2025-06-04 05:10:30] -rw-r--r--. 2 boinc boinc     15093 Jun  4 00:34 start_atlas.sh
[2025-06-04 05:10:30] -rw-r--r--. 2 boinc boinc    508882 Jun  4 00:34 input.tar.gz
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc 178194696 Jun  4 04:50 HITS.pool.root.1
[2025-06-04 05:10:30] -rw-------. 1 boinc boinc   1597440 Jun  4 04:53 result.tar.gz
05:10:32 (26619): run_atlas exited; CPU time 49324.520129
05:10:32 (26619): called boinc_finish(0)

</stderr_txt>
]]>

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