Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:40:06 (2887553): wrapper (7.7.26015): starting
10:40:06 (2887553): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 10:40:06] Arguments: --nthreads 4
[2025-06-05 10:40:06] Threads: 4
[2025-06-05 10:40:06] Checking for CVMFS
[2025-06-05 10:40:06] No cvmfs_config command found, will try listing directly
[2025-06-05 10:40:06] CVMFS is ok
[2025-06-05 10:40:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 10:40:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 10:40:06] Further information can be found at the LHC@home message board.
[2025-06-05 10:40:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 10:40:06] Checking for apptainer binary...
[2025-06-05 10:40:06] which: no apptainer in ((null))
[2025-06-05 10:40:06] apptainer is not installed, using version from CVMFS
[2025-06-05 10:40:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 10:40:07] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-06-05 10:40:07] apptainer works
[2025-06-05 10:40:07] Set ATHENA_PROC_NUMBER=4
[2025-06-05 10:40:07] Set ATHENA_CORE_NUMBER=4
[2025-06-05 10:40:07] Starting ATLAS job with PandaID=6677580960
[2025-06-05 10:40:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 13:28:30]  *** The last 200 lines of the pilot log: ***
[2025-06-05 13:28:30] 2025-06-05 11:24:34,372 | INFO     | monitor loop #720: job 0:6677580960 is in state 'finished'
[2025-06-05 13:28:30] 2025-06-05 11:24:34,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:28:30] 2025-06-05 11:24:35,520 | INFO     | PID=2891254 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 13:28:30] 2025-06-05 11:24:35,520 | INFO     | .. there are 7 such processes running
[2025-06-05 13:28:30] 2025-06-05 11:24:36,876 | INFO     | monitor loop #721: job 0:6677580960 is in state 'finished'
[2025-06-05 13:28:30] 2025-06-05 11:24:36,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:28:30] 2025-06-05 11:24:36,885 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 13:28:30] 2025-06-05 11:24:36,886 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6677580960/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 13:28:30] 2025-06-05 11:24:36,888 | INFO     | extracted standard info from prmon json
[2025-06-05 13:28:30] 2025-06-05 11:24:36,888 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 13:28:30] 2025-06-05 11:24:36,888 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 13:28:30] 2025-06-05 11:24:36,888 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 13:28:30] 2025-06-05 11:24:36,889 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 13:28:30] 2025-06-05 11:24:36,892 | INFO     | fitting pss+swap vs Time
[2025-06-05 13:28:30] 2025-06-05 11:24:36,893 | INFO     | sum of square deviations: 1294014960.0
[2025-06-05 13:28:30] 2025-06-05 11:24:36,894 | INFO     | sum of deviations: 5829505809.0
[2025-06-05 13:28:30] 2025-06-05 11:24:36,894 | INFO     | mean x: 1749117727.0
[2025-06-05 13:28:30] 2025-06-05 11:24:36,894 | INFO     | mean y: 2332999.453416149
[2025-06-05 13:28:30] 2025-06-05 11:24:36,894 | INFO     | -- intersect: -7877399666.211729
[2025-06-05 13:28:30] 2025-06-05 11:24:36,894 | INFO     | intersect: -7877399666.211729
[2025-06-05 13:28:30] 2025-06-05 11:24:36,895 | INFO     | chi2: 1.7803220210895796
[2025-06-05 13:28:30] 2025-06-05 11:24:36,895 | INFO     | sum of square deviations: 1177156955.0
[2025-06-05 13:28:30] 2025-06-05 11:24:36,896 | INFO     | sum of deviations: 5782490028.499997
[2025-06-05 13:28:30] 2025-06-05 11:24:36,896 | INFO     | mean x: 1749117574.5
[2025-06-05 13:28:30] 2025-06-05 11:24:36,896 | INFO     | mean y: 2332938.3525641025
[2025-06-05 13:28:30] 2025-06-05 11:24:36,896 | INFO     | -- intersect: -8589771020.477932
[2025-06-05 13:28:30] 2025-06-05 11:24:36,896 | INFO     | intersect: -8589771020.477932
[2025-06-05 13:28:30] 2025-06-05 11:24:36,897 | INFO     | chi2: 1.7817646876412447
[2025-06-05 13:28:30] 2025-06-05 11:24:36,897 | INFO     | current chi2=1.7817646876412447 (change=-0.08103402275405261 %)
[2025-06-05 13:28:30] 2025-06-05 11:24:36,897 | INFO     | right removable region: 155
[2025-06-05 13:28:30] 2025-06-05 11:24:36,897 | INFO     | sum of square deviations: 1177156955.0
[2025-06-05 13:28:30] 2025-06-05 11:24:36,898 | INFO     | sum of deviations: -20565166985.000004
[2025-06-05 13:28:30] 2025-06-05 11:24:36,898 | INFO     | mean x: 1749117879.5
[2025-06-05 13:28:30] 2025-06-05 11:24:36,898 | INFO     | mean y: 2367040.3974358975
[2025-06-05 13:28:30] 2025-06-05 11:24:36,898 | INFO     | -- intersect: 30559805549.83275
[2025-06-05 13:28:30] 2025-06-05 11:24:36,899 | INFO     | intersect: 30559805549.83275
[2025-06-05 13:28:30] 2025-06-05 11:24:36,899 | INFO     | chi2: 0.08438354210255228
[2025-06-05 13:28:30] 2025-06-05 11:24:36,899 | INFO     | current chi2=0.08438354210255228 (change=95.26020904628768 %)
[2025-06-05 13:28:30] 2025-06-05 11:24:36,899 | INFO     | sum of square deviations: 1067554900.0
[2025-06-05 13:28:30] 2025-06-05 11:24:36,900 | INFO     | sum of deviations: -19187862320.0
[2025-06-05 13:28:30] 2025-06-05 11:24:36,900 | INFO     | mean x: 1749118032.0
[2025-06-05 13:28:30] 2025-06-05 11:24:36,900 | INFO     | mean y: 2365085.476821192
[2025-06-05 13:28:30] 2025-06-05 11:24:36,900 | INFO     | -- intersect: 31440407269.017315
[2025-06-05 13:28:30] 2025-06-05 11:24:36,900 | INFO     | intersect: 31440407269.017315
[2025-06-05 13:28:30] 2025-06-05 11:24:36,901 | INFO     | chi2: 0.07966031306796542
[2025-06-05 13:28:30] 2025-06-05 11:24:36,901 | INFO     | current chi2=0.07966031306796542 (change=5.597334405382821 %)
[2025-06-05 13:28:30] 2025-06-05 11:24:36,901 | INFO     | left removable region: 20
[2025-06-05 13:28:30] 2025-06-05 11:24:36,901 | INFO     | sum of square deviations: 762879420.0
[2025-06-05 13:28:30] 2025-06-05 11:24:36,902 | INFO     | sum of deviations: -12208399639.000004
[2025-06-05 13:28:30] 2025-06-05 11:24:36,902 | INFO     | mean x: 1749118154.0
[2025-06-05 13:28:30] 2025-06-05 11:24:36,902 | INFO     | mean y: 2356033.059259259
[2025-06-05 13:28:30] 2025-06-05 11:24:36,902 | INFO     | -- intersect: 27993586206.57993
[2025-06-05 13:28:30] 2025-06-05 11:24:36,902 | INFO     | intersect: 27993586206.57993
[2025-06-05 13:28:30] 2025-06-05 11:24:36,903 | INFO     | chi2: 0.06878195064258924
[2025-06-05 13:28:30] 2025-06-05 11:24:36,903 | INFO     | -- intersect: 27993586206.57993
[2025-06-05 13:28:30] 2025-06-05 11:24:36,903 | INFO     | current memory leak: -16.00 B/s (using 135 data points, chi2=0.07)
[2025-06-05 13:28:30] 2025-06-05 11:24:36,904 | INFO     | ..............................
[2025-06-05 13:28:30] 2025-06-05 11:24:36,904 | INFO     | . Timing measurements:
[2025-06-05 13:28:30] 2025-06-05 11:24:36,904 | INFO     | . get job = 0 s
[2025-06-05 13:28:30] 2025-06-05 11:24:36,904 | INFO     | . initial setup = 1 s
[2025-06-05 13:28:30] 2025-06-05 11:24:36,904 | INFO     | . payload setup = 8 s
[2025-06-05 13:28:30] 2025-06-05 11:24:36,904 | INFO     | . stage-in = 0 s
[2025-06-05 13:28:30] 2025-06-05 11:24:36,904 | INFO     | . payload execution = 9822 s
[2025-06-05 13:28:30] 2025-06-05 11:24:36,904 | INFO     | . stage-out = 0 s
[2025-06-05 13:28:30] 2025-06-05 11:24:36,904 | INFO     | . log creation = 0 s
[2025-06-05 13:28:30] 2025-06-05 11:24:36,904 | INFO     | ..............................
[2025-06-05 13:28:30] 2025-06-05 11:24:37,009 | INFO     | 
[2025-06-05 13:28:30] 2025-06-05 11:24:37,010 | INFO     | job summary report
[2025-06-05 13:28:30] 2025-06-05 11:24:37,010 | INFO     | --------------------------------------------------
[2025-06-05 13:28:30] 2025-06-05 11:24:37,010 | INFO     | PanDA job id: 6677580960
[2025-06-05 13:28:30] 2025-06-05 11:24:37,010 | INFO     | task id: 45006595
[2025-06-05 13:28:30] 2025-06-05 11:24:37,010 | INFO     | errors: (none)
[2025-06-05 13:28:30] 2025-06-05 11:24:37,010 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 13:28:30] 2025-06-05 11:24:37,010 | INFO     | pilot state: finished 
[2025-06-05 13:28:30] 2025-06-05 11:24:37,010 | INFO     | transexitcode: 0
[2025-06-05 13:28:30] 2025-06-05 11:24:37,010 | INFO     | exeerrorcode: 0
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | exeerrordiag: 
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | exitcode: 0
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | exitmsg: OK
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | cpuconsumptiontime: 37473 s
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | nevents: 400
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | neventsw: 0
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | pid: 2898299
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | pgrp: 2898299
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | corecount: 4
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | event service: False
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | sizes: {0: 2397182, 1: 2397381, 5: 2397587, 11: 2397643, 9834: 2426048, 9836: 2435011, 9837: 2435195, 9843: 2435365}
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | --------------------------------------------------
[2025-06-05 13:28:30] 2025-06-05 11:24:37,011 | INFO     | 
[2025-06-05 13:28:30] 2025-06-05 11:24:37,012 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-06-05 13:28:30] 2025-06-05 11:24:37,033 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,034 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,034 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,035 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,035 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 13:28:30] 2025-06-05 11:24:37,035 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,035 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 13:28:30] 2025-06-05 11:24:37,036 | INFO     | job 6677580960 has completed (purged errors)
[2025-06-05 13:28:30] 2025-06-05 11:24:37,036 | INFO     | overall cleanup function is called
[2025-06-05 13:28:30] 2025-06-05 11:24:38,044 | INFO     | --- collectZombieJob: --- 10, [2898299]
[2025-06-05 13:28:30] 2025-06-05 11:24:38,044 | INFO     | zombie collector waiting for pid 2898299
[2025-06-05 13:28:30] 2025-06-05 11:24:38,045 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 13:28:30] 2025-06-05 11:24:38,045 | INFO     | collected zombie processes
[2025-06-05 13:28:30] 2025-06-05 11:24:38,045 | INFO     | will attempt to kill all subprocesses of pid=2898299
[2025-06-05 13:28:30] 2025-06-05 11:24:38,412 | INFO     | process IDs to be killed: [2898299] (in reverse order)
[2025-06-05 13:28:30] 2025-06-05 11:24:38,541 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 13:28:30] 2025-06-05 11:24:38,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 13:28:30] 2025-06-05 11:24:38,554 | INFO     | did not find any defunct processes belonging to 2898299
[2025-06-05 13:28:30] 2025-06-05 11:24:38,567 | INFO     | did not find any defunct processes belonging to 2898299
[2025-06-05 13:28:30] 2025-06-05 11:24:38,567 | INFO     | ready for new job
[2025-06-05 13:28:30] 2025-06-05 11:24:38,568 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 13:28:30] 2025-06-05 11:24:38,570 | INFO     | **************************************
[2025-06-05 13:28:30] 2025-06-05 11:24:38,570 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 13:28:30] 2025-06-05 11:24:38,570 | INFO     | **************************************
[2025-06-05 13:28:30] 2025-06-05 11:24:38,570 | INFO     | 
[2025-06-05 13:28:30] 2025-06-05 11:24:38,574 | INFO     | architecture information:
[2025-06-05 13:28:30] 2025-06-05 11:24:38,575 | INFO     | executing command: cat /etc/os-release
[2025-06-05 13:28:30] 2025-06-05 11:24:38,593 | INFO     | cat /etc/os-release:
[2025-06-05 13:28:30] NAME="CentOS Linux"
[2025-06-05 13:28:30] VERSION="7 (Core)"
[2025-06-05 13:28:30] ID="centos"
[2025-06-05 13:28:30] ID_LIKE="rhel fedora"
[2025-06-05 13:28:30] VERSION_ID="7"
[2025-06-05 13:28:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 13:28:30] ANSI_COLOR="0;31"
[2025-06-05 13:28:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 13:28:30] HOME_URL="https://www.centos.org/"
[2025-06-05 13:28:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 13:28:30] 
[2025-06-05 13:28:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 13:28:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 13:28:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 13:28:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 13:28:30] 
[2025-06-05 13:28:30] 2025-06-05 11:24:38,594 | INFO     | **************************************
[2025-06-05 13:28:30] 2025-06-05 11:24:39,097 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-06-05 13:28:30] 2025-06-05 11:24:39,114 | INFO     | sufficient remaining disk space (672516800512 B)
[2025-06-05 13:28:30] 2025-06-05 11:24:39,115 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 13:28:30] 2025-06-05 11:24:39,115 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 13:28:30] 2025-06-05 11:24:39,115 | INFO     | update_server=False
[2025-06-05 13:28:30] 2025-06-05 11:24:39,115 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 13:28:30] 2025-06-05 11:24:39,230 | INFO     | all data control threads have been joined
[2025-06-05 13:28:30] 2025-06-05 11:24:39,379 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 13:28:30] 2025-06-05 11:24:39,379 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 13:28:30] 2025-06-05 11:24:39,379 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:28:30] 2025-06-05 11:24:39,380 | INFO     | will abort loop
[2025-06-05 13:28:30] 2025-06-05 11:24:39,530 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 13:28:30] 2025-06-05 11:24:39,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 13:28:30] 2025-06-05 11:24:39,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 13:28:30] 2025-06-05 11:24:39,738 | INFO     | all payload control threads have been joined
[2025-06-05 13:28:30] 2025-06-05 11:24:40,120 | INFO     | [job] retrieve thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:40,175 | INFO     | [payload] failed_post thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:40,230 | INFO     | all job control threads have been joined
[2025-06-05 13:28:30] 2025-06-05 11:24:40,235 | INFO     | [data] control thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:40,385 | INFO     | [job] job monitor thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:40,566 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 13:28:30] 2025-06-05 11:24:40,617 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:40,743 | INFO     | [payload] control thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:40,778 | INFO     | [job] validate thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:40,800 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:40,903 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:40,904 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:41,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 13:28:30] 2025-06-05 11:24:41,232 | INFO     | [job] control thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:41,402 | INFO     | [data] copytool_in thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:41,608 | INFO     | [payload] validate_post thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:42,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:28:30] 2025-06-05 11:24:42,571 | INFO     | [data] copytool_out thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:43,021 | INFO     | [job] queue monitor thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:45,234 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 13:28:30] 2025-06-05 11:24:46,662 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22874339874624)>', '<ExcThread(monitor, started 22874102400768)>']
[2025-06-05 13:28:30] 2025-06-05 11:24:47,568 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 13:28:30] 2025-06-05 11:24:47,569 | INFO     | [monitor] control thread has ended
[2025-06-05 13:28:30] 2025-06-05 11:24:51,684 | INFO     | all workflow threads have been joined
[2025-06-05 13:28:30] 2025-06-05 11:24:51,685 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 13:28:30] 2025-06-05 11:24:51,685 | INFO     | traces error code: 0
[2025-06-05 13:28:30] 2025-06-05 11:24:51,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 13:28:30] 2025-06-05 11:24:51,879 [wrapper] ==== pilot stdout END ====
[2025-06-05 13:28:30] 2025-06-05 11:24:51,882 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 13:28:30] 2025-06-05 11:24:51,884 [wrapper] pilotpid: 2891254
[2025-06-05 13:28:30] 2025-06-05 11:24:51,887 [wrapper] Pilot exit status: 0
[2025-06-05 13:28:30] 2025-06-05 11:24:51,899 [wrapper] pandaids: 6677580960
[2025-06-05 13:28:30] 2025-06-05 11:24:51,969 [wrapper] cleanup supervisor_pilot 3182719 2891255
[2025-06-05 13:28:30] 2025-06-05 11:24:51,972 [wrapper] Test setup, not cleaning
[2025-06-05 13:28:30] 2025-06-05 11:24:51,976 [wrapper] apfmon messages muted
[2025-06-05 13:28:30] 2025-06-05 11:24:51,979 [wrapper] ==== wrapper stdout END ====
[2025-06-05 13:28:30] 2025-06-05 11:24:51,981 [wrapper] ==== wrapper stderr END ====
[2025-06-05 13:28:30]  *** Error codes and diagnostics ***
[2025-06-05 13:28:30]     "exeErrorCode": 0,
[2025-06-05 13:28:30]     "exeErrorDiag": "",
[2025-06-05 13:28:30]     "pilotErrorCode": 0,
[2025-06-05 13:28:30]     "pilotErrorDiag": "",
[2025-06-05 13:28:30]  *** Listing of results directory ***
[2025-06-05 13:28:30] total 393720
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc    495897 Jun  3 12:57 pilot3.tar.gz
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc      5111 Jun  3 13:19 queuedata.json
[2025-06-05 13:28:30] -rwx------ 1 boinc boinc     37140 Jun  3 13:19 runpilot2-wrapper.sh
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc       100 Jun  5 10:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 13:28:30] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 10:40 run_atlas
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc       105 Jun  5 10:40 job.xml
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc      6635 Jun  5 10:40 init_data.xml
[2025-06-05 13:28:30] -rw-r--r-- 2 boinc boinc 216000206 Jun  5 10:40 EVNT.45006593._001220.pool.root.1
[2025-06-05 13:28:30] -rw-r--r-- 2 boinc boinc     15093 Jun  5 10:40 start_atlas.sh
[2025-06-05 13:28:30] drwxrwx--x 2 boinc boinc      4096 Jun  5 10:40 shared
[2025-06-05 13:28:30] -rw-r--r-- 2 boinc boinc    508879 Jun  5 10:40 input.tar.gz
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc         0 Jun  5 10:40 boinc_lockfile
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc      2525 Jun  5 10:40 pandaJob.out
[2025-06-05 13:28:30] -rw------- 1 boinc boinc    983281 Jun  5 10:40 agis_schedconf.cvmfs.json
[2025-06-05 13:28:30] -rw------- 1 boinc boinc   1598969 Jun  5 10:40 agis_ddmendpoints.agis.ALL.json
[2025-06-05 13:28:30] drwx------ 4 boinc boinc      4096 Jun  5 10:40 pilot3
[2025-06-05 13:28:30] -rw------- 1 boinc boinc 180858663 Jun  5 13:23 HITS.45006595._030473.pool.root.1
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc       528 Jun  5 13:23 boinc_task_state.xml
[2025-06-05 13:28:30] -rw------- 1 boinc boinc        95 Jun  5 13:24 pilot_heartbeat.json
[2025-06-05 13:28:30] -rw------- 1 boinc boinc      1048 Jun  5 13:24 memory_monitor_summary.json
[2025-06-05 13:28:30] -rw------- 1 boinc boinc    308559 Jun  5 13:24 log.45006595._030473.job.log.tgz.1
[2025-06-05 13:28:30] -rw------- 1 boinc boinc      7720 Jun  5 13:24 heartbeat.json
[2025-06-05 13:28:30] -rw------- 1 boinc boinc      4549 Jun  5 13:24 pilotlog.txt
[2025-06-05 13:28:30] -rw------- 1 boinc boinc    929179 Jun  5 13:24 log.45006595._030473.job.log.1
[2025-06-05 13:28:30] -rw------- 1 boinc boinc       357 Jun  5 13:24 output.list
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc       620 Jun  5 13:24 runtime_log
[2025-06-05 13:28:30] -rw------- 1 boinc boinc   1259520 Jun  5 13:24 result.tar.gz
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc      9025 Jun  5 13:24 runtime_log.err
[2025-06-05 13:28:30] -rw------- 1 boinc boinc       662 Jun  5 13:24 NRnNDmMreg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKkjKDmotFD7m.diag
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc        26 Jun  5 13:28 wrapper_checkpoint.txt
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc      8192 Jun  5 13:28 boinc_mmap_file
[2025-06-05 13:28:30] -rw-r--r-- 1 boinc boinc     20924 Jun  5 13:28 stderr.txt
[2025-06-05 13:28:30] HITS file was successfully produced:
[2025-06-05 13:28:30] -rw------- 1 boinc boinc 180858663 Jun  5 13:23 shared/HITS.pool.root.1
[2025-06-05 13:28:30]  *** Contents of shared directory: ***
[2025-06-05 13:28:30] total 389316
[2025-06-05 13:28:30] -rw-r--r-- 2 boinc boinc 216000206 Jun  5 10:40 ATLAS.root_0
[2025-06-05 13:28:30] -rw-r--r-- 2 boinc boinc     15093 Jun  5 10:40 start_atlas.sh
[2025-06-05 13:28:30] -rw-r--r-- 2 boinc boinc    508879 Jun  5 10:40 input.tar.gz
[2025-06-05 13:28:30] -rw------- 1 boinc boinc 180858663 Jun  5 13:23 HITS.pool.root.1
[2025-06-05 13:28:30] -rw------- 1 boinc boinc   1259520 Jun  5 13:24 result.tar.gz
13:28:32 (2887553): run_atlas exited; CPU time 37851.221805
13:28:32 (2887553): called boinc_finish(0)

</stderr_txt>
]]>

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