Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:55:55 (3191998): wrapper (7.7.26015): starting
10:55:55 (3191998): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 10:55:55] Arguments: --nthreads 8
[2025-06-03 10:55:55] Threads: 8
[2025-06-03 10:55:55] Checking for CVMFS
[2025-06-03 10:55:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 10:55:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 10:55:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 10:55:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 10:55:56] 2.12.6.0 3646663 90526 332980 146746 1 56 20847255 32935936 2847 16776704 1 376279106 99.632 367866064 25216 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 10:55:56] CVMFS is ok
[2025-06-03 10:55:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 10:55:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 10:55:56] Further information can be found at the LHC@home message board.
[2025-06-03 10:55:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 10:55:56] Checking for apptainer binary...
[2025-06-03 10:55:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 10:55:56] Running /usr/bin/apptainer --version
[2025-06-03 10:55:56] apptainer version 1.4.1-1.el9
[2025-06-03 10:55:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 10:55:56] c-5-2.aglt2.org
[2025-06-03 10:55:56] apptainer works
[2025-06-03 10:55:56] Set ATHENA_PROC_NUMBER=8
[2025-06-03 10:55:56] Set ATHENA_CORE_NUMBER=8
[2025-06-03 10:55:56] Starting ATLAS job with PandaID=6677617379
[2025-06-03 10:55:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:14:59]  *** The last 200 lines of the pilot log: ***
[2025-06-03 12:14:59]  mtime=0
[2025-06-03 12:14:59]  protocol_id=None
[2025-06-03 12:14:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 12:14:59]  replicas=None
[2025-06-03 12:14:59]  scope=mc23_13p6TeV
[2025-06-03 12:14:59]  status=None
[2025-06-03 12:14:59]  status_code=0
[2025-06-03 12:14:59]  storage_token=
[2025-06-03 12:14:59]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6677617379/log.45006595._032006.job.log.tgz.1
[2025-06-03 12:14:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/04/log.45006595._032006.job.log.tgz.1
[2025-06-03 12:14:59]  workdir=None
[2025-06-03 12:14:59] ]
[2025-06-03 12:14:59] 2025-06-03 16:14:39,956 | INFO     | transferring file log.45006595._032006.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6677617379/log.45006595._032006.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 12:14:59] 2025-06-03 16:14:39,957 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6677617379/log.45006595._032006.job.log.tgz.1 /tmp/boinchome/slots/4/log.45006595._032006.job
[2025-06-03 12:14:59] 2025-06-03 16:14:39,972 | INFO     | adding to output.list: log.45006595._032006.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/04/log.45006595._032006.job.log.tg
[2025-06-03 12:14:59] 2025-06-03 16:14:39,973 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 12:14:59] 2025-06-03 16:14:39,973 | INFO     | summary of transferred files:
[2025-06-03 12:14:59] 2025-06-03 16:14:39,974 | INFO     |  -- lfn=log.45006595._032006.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 12:14:59] 2025-06-03 16:14:39,974 | INFO     | stage-out finished correctly
[2025-06-03 12:14:59] 2025-06-03 16:14:40,357 | WARNING  | process 3202646 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 12:14:59] 2025-06-03 16:14:40,358 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6677617379/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 12:14:59] 2025-06-03 16:14:40,611 | INFO     | number of running child processes to parent process 3202646: 1
[2025-06-03 12:14:59] 2025-06-03 16:14:40,611 | INFO     | maximum number of monitored processes: 6
[2025-06-03 12:14:59] 2025-06-03 16:14:42,426 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 12:14:59] 2025-06-03 16:14:42,528 | INFO     | job 6677617379 has state=finished
[2025-06-03 12:14:59] 2025-06-03 16:14:42,528 | INFO     | preparing for final server update for job 6677617379 in state='finished'
[2025-06-03 12:14:59] 2025-06-03 16:14:42,529 | INFO     | this job has now completed (state=finished)
[2025-06-03 12:14:59] 2025-06-03 16:14:42,529 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 12:14:59] 2025-06-03 16:14:42,529 | INFO     | log transfer has been attempted: DONE
[2025-06-03 12:14:59] 2025-06-03 16:14:42,530 | INFO     | job 6677617379 has finished - writing final server update
[2025-06-03 12:14:59] 2025-06-03 16:14:42,530 | INFO     | total number of processed events: 400 (read)
[2025-06-03 12:14:59] 2025-06-03 16:14:42,544 | INFO     | executing command: lscpu
[2025-06-03 12:14:59] 2025-06-03 16:14:42,609 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 12:14:59] 2025-06-03 16:14:43,117 | INFO     | monitor loop #352: job 0:6677617379 is in state 'finished'
[2025-06-03 12:14:59] 2025-06-03 16:14:43,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 12:14:59] 2025-06-03 16:14:45,621 | INFO     | monitor loop #353: job 0:6677617379 is in state 'finished'
[2025-06-03 12:14:59] 2025-06-03 16:14:45,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 12:14:59] 2025-06-03 16:14:45,696 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 12:14:59] 2025-06-03 16:14:45,697 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6677617379/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 12:14:59] 2025-06-03 16:14:45,698 | INFO     | extracted standard info from prmon json
[2025-06-03 12:14:59] 2025-06-03 16:14:45,698 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 12:14:59] 2025-06-03 16:14:45,698 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 12:14:59] 2025-06-03 16:14:45,699 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 12:14:59] 2025-06-03 16:14:45,699 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 12:14:59] 2025-06-03 16:14:45,701 | INFO     | fitting pss+swap vs Time
[2025-06-03 12:14:59] 2025-06-03 16:14:45,701 | INFO     | sum of square deviations: 106336877.5
[2025-06-03 12:14:59] 2025-06-03 16:14:45,702 | INFO     | sum of deviations: 1663603041.0
[2025-06-03 12:14:59] 2025-06-03 16:14:45,702 | INFO     | mean x: 1748964999.5
[2025-06-03 12:14:59] 2025-06-03 16:14:45,702 | INFO     | mean y: 2190527.285714286
[2025-06-03 12:14:59] 2025-06-03 16:14:45,702 | INFO     | -- intersect: -27359751634.037987
[2025-06-03 12:14:59] 2025-06-03 16:14:45,702 | INFO     | intersect: -27359751634.037987
[2025-06-03 12:14:59] 2025-06-03 16:14:45,702 | INFO     | chi2: 0.9445995556870039
[2025-06-03 12:14:59] 2025-06-03 16:14:45,703 | INFO     | -- intersect: -27359751634.037987
[2025-06-03 12:14:59] 2025-06-03 16:14:45,703 | INFO     | current memory leak: 15.64 B/s (using 70 data points, chi2=0.94)
[2025-06-03 12:14:59] 2025-06-03 16:14:45,703 | INFO     | ..............................
[2025-06-03 12:14:59] 2025-06-03 16:14:45,703 | INFO     | . Timing measurements:
[2025-06-03 12:14:59] 2025-06-03 16:14:45,704 | INFO     | . get job = 0 s
[2025-06-03 12:14:59] 2025-06-03 16:14:45,704 | INFO     | . initial setup = 2 s
[2025-06-03 12:14:59] 2025-06-03 16:14:45,704 | INFO     | . payload setup = 5 s
[2025-06-03 12:14:59] 2025-06-03 16:14:45,704 | INFO     | . stage-in = 0 s
[2025-06-03 12:14:59] 2025-06-03 16:14:45,704 | INFO     | . payload execution = 4688 s
[2025-06-03 12:14:59] 2025-06-03 16:14:45,704 | INFO     | . stage-out = 0 s
[2025-06-03 12:14:59] 2025-06-03 16:14:45,704 | INFO     | . log creation = 0 s
[2025-06-03 12:14:59] 2025-06-03 16:14:45,704 | INFO     | ..............................
[2025-06-03 12:14:59] 2025-06-03 16:14:45,814 | INFO     | 
[2025-06-03 12:14:59] 2025-06-03 16:14:45,815 | INFO     | job summary report
[2025-06-03 12:14:59] 2025-06-03 16:14:45,815 | INFO     | --------------------------------------------------
[2025-06-03 12:14:59] 2025-06-03 16:14:45,815 | INFO     | PanDA job id: 6677617379
[2025-06-03 12:14:59] 2025-06-03 16:14:45,815 | INFO     | task id: 45006595
[2025-06-03 12:14:59] 2025-06-03 16:14:45,815 | INFO     | errors: (none)
[2025-06-03 12:14:59] 2025-06-03 16:14:45,815 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 12:14:59] 2025-06-03 16:14:45,815 | INFO     | pilot state: finished 
[2025-06-03 12:14:59] 2025-06-03 16:14:45,816 | INFO     | transexitcode: 0
[2025-06-03 12:14:59] 2025-06-03 16:14:45,816 | INFO     | exeerrorcode: 0
[2025-06-03 12:14:59] 2025-06-03 16:14:45,816 | INFO     | exeerrordiag: 
[2025-06-03 12:14:59] 2025-06-03 16:14:45,816 | INFO     | exitcode: 0
[2025-06-03 12:14:59] 2025-06-03 16:14:45,816 | INFO     | exitmsg: OK
[2025-06-03 12:14:59] 2025-06-03 16:14:45,816 | INFO     | cpuconsumptiontime: 32143 s
[2025-06-03 12:14:59] 2025-06-03 16:14:45,816 | INFO     | nevents: 400
[2025-06-03 12:14:59] 2025-06-03 16:14:45,816 | INFO     | neventsw: 0
[2025-06-03 12:14:59] 2025-06-03 16:14:45,816 | INFO     | pid: 3202646
[2025-06-03 12:14:59] 2025-06-03 16:14:45,817 | INFO     | pgrp: 3202646
[2025-06-03 12:14:59] 2025-06-03 16:14:45,817 | INFO     | corecount: 8
[2025-06-03 12:14:59] 2025-06-03 16:14:45,817 | INFO     | event service: False
[2025-06-03 12:14:59] 2025-06-03 16:14:45,817 | INFO     | sizes: {0: 2405184, 4: 2405390, 11: 2405418, 4698: 2431559, 4699: 2431558, 4700: 2440555, 4702: 2440739, 4706: 2440909}
[2025-06-03 12:14:59] 2025-06-03 16:14:45,817 | INFO     | --------------------------------------------------
[2025-06-03 12:14:59] 2025-06-03 16:14:45,817 | INFO     | 
[2025-06-03 12:14:59] 2025-06-03 16:14:45,817 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-06-03 12:14:59] 2025-06-03 16:14:45,834 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,835 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,835 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,835 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,835 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,835 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,835 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,835 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,835 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,836 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,836 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,836 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,836 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,836 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 12:14:59] 2025-06-03 16:14:45,837 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,837 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 12:14:59] 2025-06-03 16:14:45,837 | INFO     | job 6677617379 has completed (purged errors)
[2025-06-03 12:14:59] 2025-06-03 16:14:45,837 | INFO     | overall cleanup function is called
[2025-06-03 12:14:59] 2025-06-03 16:14:46,574 | INFO     | PID=3195619 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-03 12:14:59] 2025-06-03 16:14:46,574 | INFO     | .. there are 5 such processes running
[2025-06-03 12:14:59] 2025-06-03 16:14:46,845 | INFO     | --- collectZombieJob: --- 10, [3202646]
[2025-06-03 12:14:59] 2025-06-03 16:14:46,846 | INFO     | zombie collector waiting for pid 3202646
[2025-06-03 12:14:59] 2025-06-03 16:14:46,846 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 12:14:59] 2025-06-03 16:14:46,846 | INFO     | collected zombie processes
[2025-06-03 12:14:59] 2025-06-03 16:14:46,846 | INFO     | will attempt to kill all subprocesses of pid=3202646
[2025-06-03 12:14:59] 2025-06-03 16:14:47,104 | INFO     | process IDs to be killed: [3202646] (in reverse order)
[2025-06-03 12:14:59] 2025-06-03 16:14:47,175 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 12:14:59] 2025-06-03 16:14:47,176 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 12:14:59] 2025-06-03 16:14:47,183 | INFO     | did not find any defunct processes belonging to 3202646
[2025-06-03 12:14:59] 2025-06-03 16:14:47,190 | INFO     | did not find any defunct processes belonging to 3202646
[2025-06-03 12:14:59] 2025-06-03 16:14:47,190 | INFO     | ready for new job
[2025-06-03 12:14:59] 2025-06-03 16:14:47,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 12:14:59] 2025-06-03 16:14:47,192 | INFO     | **************************************
[2025-06-03 12:14:59] 2025-06-03 16:14:47,192 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 12:14:59] 2025-06-03 16:14:47,192 | INFO     | **************************************
[2025-06-03 12:14:59] 2025-06-03 16:14:47,192 | INFO     | 
[2025-06-03 12:14:59] 2025-06-03 16:14:47,206 | INFO     | architecture information:
[2025-06-03 12:14:59] 2025-06-03 16:14:47,207 | INFO     | executing command: cat /etc/os-release
[2025-06-03 12:14:59] 2025-06-03 16:14:47,219 | INFO     | cat /etc/os-release:
[2025-06-03 12:14:59] NAME="CentOS Linux"
[2025-06-03 12:14:59] VERSION="7 (Core)"
[2025-06-03 12:14:59] ID="centos"
[2025-06-03 12:14:59] ID_LIKE="rhel fedora"
[2025-06-03 12:14:59] VERSION_ID="7"
[2025-06-03 12:14:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 12:14:59] ANSI_COLOR="0;31"
[2025-06-03 12:14:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 12:14:59] HOME_URL="https://www.centos.org/"
[2025-06-03 12:14:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 12:14:59] 
[2025-06-03 12:14:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 12:14:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 12:14:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 12:14:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 12:14:59] 
[2025-06-03 12:14:59] 2025-06-03 16:14:47,219 | INFO     | **************************************
[2025-06-03 12:14:59] 2025-06-03 16:14:47,722 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-06-03 12:14:59] 2025-06-03 16:14:47,737 | INFO     | sufficient remaining disk space (74591502336 B)
[2025-06-03 12:14:59] 2025-06-03 16:14:47,737 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 12:14:59] 2025-06-03 16:14:47,737 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 12:14:59] 2025-06-03 16:14:47,737 | INFO     | update_server=False
[2025-06-03 12:14:59] 2025-06-03 16:14:47,737 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 12:14:59] 2025-06-03 16:14:47,738 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:14:59] 2025-06-03 16:14:48,091 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 12:14:59] 2025-06-03 16:14:48,122 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 12:14:59] 2025-06-03 16:14:48,122 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 12:14:59] 2025-06-03 16:14:48,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:14:59] 2025-06-03 16:14:48,122 | INFO     | will abort loop
[2025-06-03 12:14:59] 2025-06-03 16:14:48,269 | INFO     | all job control threads have been joined
[2025-06-03 12:14:59] 2025-06-03 16:14:48,371 | INFO     | all data control threads have been joined
[2025-06-03 12:14:59] 2025-06-03 16:14:48,469 | INFO     | all payload control threads have been joined
[2025-06-03 12:14:59] 2025-06-03 16:14:48,534 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 12:14:59] 2025-06-03 16:14:48,579 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 12:14:59] 2025-06-03 16:14:48,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 12:14:59] 2025-06-03 16:14:48,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 12:14:59] 2025-06-03 16:14:48,743 | INFO     | [job] queue monitor thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:48,743 | INFO     | [job] retrieve thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:48,819 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:48,822 | INFO     | [payload] failed_post thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:49,104 | INFO     | [data] copytool_in thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:49,127 | INFO     | [job] job monitor thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:49,219 | INFO     | [job] validate thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:49,274 | INFO     | [job] control thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:49,376 | INFO     | [data] control thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:49,396 | INFO     | [payload] validate_post thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:49,474 | INFO     | [payload] control thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:49,583 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:49,943 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:49,943 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:50,097 | INFO     | [data] copytool_out thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:52,540 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 12:14:59] 2025-06-03 16:14:54,146 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140231667013440)>', '<ExcThread(monitor, started 140230816429824)>']
[2025-06-03 12:14:59] 2025-06-03 16:14:54,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 12:14:59] 2025-06-03 16:14:54,608 | INFO     | [monitor] control thread has ended
[2025-06-03 12:14:59] 2025-06-03 16:14:59,168 | INFO     | all workflow threads have been joined
[2025-06-03 12:14:59] 2025-06-03 16:14:59,169 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 12:14:59] 2025-06-03 16:14:59,169 | INFO     | traces error code: 0
[2025-06-03 12:14:59] 2025-06-03 16:14:59,169 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 12:14:59] 2025-06-03 16:14:59,282 [wrapper] ==== pilot stdout END ====
[2025-06-03 12:14:59] 2025-06-03 16:14:59,284 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 12:14:59] 2025-06-03 16:14:59,287 [wrapper] pilotpid: 3195619
[2025-06-03 12:14:59] 2025-06-03 16:14:59,289 [wrapper] Pilot exit status: 0
[2025-06-03 12:14:59] 2025-06-03 16:14:59,297 [wrapper] pandaids: 6677617379
[2025-06-03 12:14:59] 2025-06-03 16:14:59,344 [wrapper] cleanup supervisor_pilot 3361676 3195620
[2025-06-03 12:14:59] 2025-06-03 16:14:59,347 [wrapper] Test setup, not cleaning
[2025-06-03 12:14:59] 2025-06-03 16:14:59,349 [wrapper] apfmon messages muted
[2025-06-03 12:14:59] 2025-06-03 16:14:59,351 [wrapper] ==== wrapper stdout END ====
[2025-06-03 12:14:59] 2025-06-03 16:14:59,353 [wrapper] ==== wrapper stderr END ====
[2025-06-03 12:14:59]  *** Error codes and diagnostics ***
[2025-06-03 12:14:59]     "exeErrorCode": 0,
[2025-06-03 12:14:59]     "exeErrorDiag": "",
[2025-06-03 12:14:59]     "pilotErrorCode": 0,
[2025-06-03 12:14:59]     "pilotErrorDiag": "",
[2025-06-03 12:14:59]  *** Listing of results directory ***
[2025-06-03 12:14:59] total 391228
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 08:14 pilot3.tar.gz
[2025-06-03 12:14:59] -rwx------. 1 boincer umatlas     37140 Jun  3 08:17 runpilot2-wrapper.sh
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 08:17 queuedata.json
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas       100 Jun  3 10:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 12:14:59] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 10:55 run_atlas
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas       105 Jun  3 10:55 job.xml
[2025-06-03 12:14:59] -rw-r--r--. 2 boincer umatlas 216767957 Jun  3 10:55 EVNT.45006593._001288.pool.root.1
[2025-06-03 12:14:59] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 10:55 start_atlas.sh
[2025-06-03 12:14:59] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 10:55 shared
[2025-06-03 12:14:59] -rw-r--r--. 2 boincer umatlas    508876 Jun  3 10:55 input.tar.gz
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas         0 Jun  3 10:55 boinc_lockfile
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 10:55 pandaJob.out
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas    982716 Jun  3 10:56 agis_schedconf.cvmfs.json
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas   1603667 Jun  3 10:56 agis_ddmendpoints.agis.ALL.json
[2025-06-03 12:14:59] drwx------. 4 boincer umatlas      4096 Jun  3 10:56 pilot3
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas      6673 Jun  3 12:13 init_data.xml
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas 178465826 Jun  3 12:14 HITS.45006595._032006.pool.root.1
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas       529 Jun  3 12:14 boinc_task_state.xml
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas        95 Jun  3 12:14 pilot_heartbeat.json
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas      1032 Jun  3 12:14 memory_monitor_summary.json
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas    310003 Jun  3 12:14 log.45006595._032006.job.log.tgz.1
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas      7706 Jun  3 12:14 heartbeat.json
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 12:14 boinc_mmap_file
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas        27 Jun  3 12:14 wrapper_checkpoint.txt
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas      4539 Jun  3 12:14 pilotlog.txt
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas    467589 Jun  3 12:14 log.45006595._032006.job.log.1
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas       357 Jun  3 12:14 output.list
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas       620 Jun  3 12:14 runtime_log
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas    798720 Jun  3 12:14 result.tar.gz
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas      8644 Jun  3 12:14 runtime_log.err
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas       648 Jun  3 12:14 FcQODmMlfg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmrYYKDmewPyfm.diag
[2025-06-03 12:14:59] -rw-r--r--. 1 boincer umatlas     21734 Jun  3 12:14 stderr.txt
[2025-06-03 12:14:59] HITS file was successfully produced:
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas 178465826 Jun  3 12:14 shared/HITS.pool.root.1
[2025-06-03 12:14:59]  *** Contents of shared directory: ***
[2025-06-03 12:14:59] total 387272
[2025-06-03 12:14:59] -rw-r--r--. 2 boincer umatlas 216767957 Jun  3 10:55 ATLAS.root_0
[2025-06-03 12:14:59] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 10:55 start_atlas.sh
[2025-06-03 12:14:59] -rw-r--r--. 2 boincer umatlas    508876 Jun  3 10:55 input.tar.gz
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas 178465826 Jun  3 12:14 HITS.pool.root.1
[2025-06-03 12:14:59] -rw-------. 1 boincer umatlas    798720 Jun  3 12:14 result.tar.gz
12:15:00 (3191998): run_atlas exited; CPU time 32266.292027
12:15:00 (3191998): called boinc_finish(0)

</stderr_txt>
]]>

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