Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:32:46 (1754051): wrapper (7.7.26015): starting
05:32:46 (1754051): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 05:32:46] Arguments: --nthreads 4
[2025-06-05 05:32:46] Threads: 4
[2025-06-05 05:32:46] Checking for CVMFS
[2025-06-05 05:32:46] No cvmfs_config command found, will try listing directly
[2025-06-05 05:32:46] CVMFS is ok
[2025-06-05 05:32:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 05:32:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 05:32:46] Further information can be found at the LHC@home message board.
[2025-06-05 05:32:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 05:32:46] Checking for apptainer binary...
[2025-06-05 05:32:46] which: no apptainer in ((null))
[2025-06-05 05:32:46] apptainer is not installed, using version from CVMFS
[2025-06-05 05:32:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 05:32:47] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-06-05 05:32:47] apptainer works
[2025-06-05 05:32:47] Set ATHENA_PROC_NUMBER=4
[2025-06-05 05:32:47] Set ATHENA_CORE_NUMBER=4
[2025-06-05 05:32:47] Starting ATLAS job with PandaID=6677617799
[2025-06-05 05:32:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 08:26:52]  *** The last 200 lines of the pilot log: ***
[2025-06-05 08:26:52] 2025-06-05 06:24:12,296 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1416092/.job.ad'
[2025-06-05 08:26:52] 2025-06-05 06:24:12,296 | INFO     | total number of processed events: 400 (read)
[2025-06-05 08:26:52] 2025-06-05 06:24:12,300 | INFO     | executing command: lscpu
[2025-06-05 08:26:52] 2025-06-05 06:24:12,361 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 08:26:52] 2025-06-05 06:24:14,560 | INFO     | monitor loop #748: job 0:6677617799 is in state 'finished'
[2025-06-05 08:26:52] 2025-06-05 06:24:14,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 08:26:52] 2025-06-05 06:24:16,645 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 08:26:52] 2025-06-05 06:24:16,645 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6677617799/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 08:26:52] 2025-06-05 06:24:16,646 | INFO     | extracted standard info from prmon json
[2025-06-05 08:26:52] 2025-06-05 06:24:16,647 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 08:26:52] 2025-06-05 06:24:16,647 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 08:26:52] 2025-06-05 06:24:16,647 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 08:26:52] 2025-06-05 06:24:16,647 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 08:26:52] 2025-06-05 06:24:16,651 | INFO     | fitting pss+swap vs Time
[2025-06-05 08:26:52] 2025-06-05 06:24:16,652 | INFO     | sum of square deviations: 1470248962.0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,653 | INFO     | sum of deviations: -17281527041.999996
[2025-06-05 08:26:52] 2025-06-05 06:24:16,653 | INFO     | mean x: 1749099499.5
[2025-06-05 08:26:52] 2025-06-05 06:24:16,653 | INFO     | mean y: 2363230.3214285714
[2025-06-05 08:26:52] 2025-06-05 06:24:16,653 | INFO     | -- intersect: 20561541356.616146
[2025-06-05 08:26:52] 2025-06-05 06:24:16,653 | INFO     | intersect: 20561541356.616146
[2025-06-05 08:26:52] 2025-06-05 06:24:16,653 | INFO     | chi2: 1.8777775737414322
[2025-06-05 08:26:52] 2025-06-05 06:24:16,654 | INFO     | sum of square deviations: 1342841922.0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,655 | INFO     | sum of deviations: -16531816973.000002
[2025-06-05 08:26:52] 2025-06-05 06:24:16,655 | INFO     | mean x: 1749099347.0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,655 | INFO     | mean y: 2364127.435582822
[2025-06-05 08:26:52] 2025-06-05 06:24:16,655 | INFO     | -- intersect: 21535643509.368534
[2025-06-05 08:26:52] 2025-06-05 06:24:16,655 | INFO     | intersect: 21535643509.368534
[2025-06-05 08:26:52] 2025-06-05 06:24:16,655 | INFO     | chi2: 1.874314858547661
[2025-06-05 08:26:52] 2025-06-05 06:24:16,655 | INFO     | current chi2=1.874314858547661 (change=0.18440497118472793 %)
[2025-06-05 08:26:52] 2025-06-05 06:24:16,656 | INFO     | right removable region: 162
[2025-06-05 08:26:52] 2025-06-05 06:24:16,656 | INFO     | sum of square deviations: 1342841922.0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,657 | INFO     | sum of deviations: -41185765829.0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,657 | INFO     | mean x: 1749099652.0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,657 | INFO     | mean y: 2391433.8711656444
[2025-06-05 08:26:52] 2025-06-05 06:24:16,657 | INFO     | -- intersect: 53648325105.323364
[2025-06-05 08:26:52] 2025-06-05 06:24:16,657 | INFO     | intersect: 53648325105.323364
[2025-06-05 08:26:52] 2025-06-05 06:24:16,657 | INFO     | chi2: 0.33528104144639226
[2025-06-05 08:26:52] 2025-06-05 06:24:16,657 | INFO     | current chi2=0.33528104144639226 (change=82.14479466924553 %)
[2025-06-05 08:26:52] 2025-06-05 06:24:16,658 | INFO     | sum of square deviations: 1223016419.5
[2025-06-05 08:26:52] 2025-06-05 06:24:16,659 | INFO     | sum of deviations: -35271256946.99999
[2025-06-05 08:26:52] 2025-06-05 06:24:16,659 | INFO     | mean x: 1749099804.5
[2025-06-05 08:26:52] 2025-06-05 06:24:16,659 | INFO     | mean y: 2383871.2025316455
[2025-06-05 08:26:52] 2025-06-05 06:24:16,659 | INFO     | -- intersect: 50445654825.56027
[2025-06-05 08:26:52] 2025-06-05 06:24:16,659 | INFO     | intersect: 50445654825.56027
[2025-06-05 08:26:52] 2025-06-05 06:24:16,659 | INFO     | chi2: 0.32484510160486396
[2025-06-05 08:26:52] 2025-06-05 06:24:16,659 | INFO     | current chi2=0.32484510160486396 (change=3.1125946747564277 %)
[2025-06-05 08:26:52] 2025-06-05 06:24:16,659 | INFO     | left removable region: 20
[2025-06-05 08:26:52] 2025-06-05 06:24:16,660 | INFO     | sum of square deviations: 887813855.5
[2025-06-05 08:26:52] 2025-06-05 06:24:16,660 | INFO     | sum of deviations: -18711099130.0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,661 | INFO     | mean x: 1749099926.5
[2025-06-05 08:26:52] 2025-06-05 06:24:16,661 | INFO     | mean y: 2362854.943661972
[2025-06-05 08:26:52] 2025-06-05 06:24:16,661 | INFO     | -- intersect: 36865475443.54554
[2025-06-05 08:26:52] 2025-06-05 06:24:16,661 | INFO     | intersect: 36865475443.54554
[2025-06-05 08:26:52] 2025-06-05 06:24:16,661 | INFO     | chi2: 0.24304223115859705
[2025-06-05 08:26:52] 2025-06-05 06:24:16,661 | INFO     | -- intersect: 36865475443.54554
[2025-06-05 08:26:52] 2025-06-05 06:24:16,661 | INFO     | current memory leak: -21.08 B/s (using 142 data points, chi2=0.24)
[2025-06-05 08:26:52] 2025-06-05 06:24:16,662 | INFO     | ..............................
[2025-06-05 08:26:52] 2025-06-05 06:24:16,662 | INFO     | . Timing measurements:
[2025-06-05 08:26:52] 2025-06-05 06:24:16,662 | INFO     | . get job = 0 s
[2025-06-05 08:26:52] 2025-06-05 06:24:16,662 | INFO     | . initial setup = 1 s
[2025-06-05 08:26:52] 2025-06-05 06:24:16,662 | INFO     | . payload setup = 7 s
[2025-06-05 08:26:52] 2025-06-05 06:24:16,662 | INFO     | . stage-in = 0 s
[2025-06-05 08:26:52] 2025-06-05 06:24:16,663 | INFO     | . payload execution = 10242 s
[2025-06-05 08:26:52] 2025-06-05 06:24:16,663 | INFO     | . stage-out = 0 s
[2025-06-05 08:26:52] 2025-06-05 06:24:16,663 | INFO     | . log creation = 0 s
[2025-06-05 08:26:52] 2025-06-05 06:24:16,663 | INFO     | ..............................
[2025-06-05 08:26:52] 2025-06-05 06:24:16,765 | INFO     | 
[2025-06-05 08:26:52] 2025-06-05 06:24:16,766 | INFO     | job summary report
[2025-06-05 08:26:52] 2025-06-05 06:24:16,766 | INFO     | --------------------------------------------------
[2025-06-05 08:26:52] 2025-06-05 06:24:16,766 | INFO     | PanDA job id: 6677617799
[2025-06-05 08:26:52] 2025-06-05 06:24:16,766 | INFO     | task id: 45006595
[2025-06-05 08:26:52] 2025-06-05 06:24:16,766 | INFO     | errors: (none)
[2025-06-05 08:26:52] 2025-06-05 06:24:16,766 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 08:26:52] 2025-06-05 06:24:16,766 | INFO     | pilot state: finished 
[2025-06-05 08:26:52] 2025-06-05 06:24:16,766 | INFO     | transexitcode: 0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,766 | INFO     | exeerrorcode: 0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,766 | INFO     | exeerrordiag: 
[2025-06-05 08:26:52] 2025-06-05 06:24:16,766 | INFO     | exitcode: 0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | exitmsg: OK
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | cpuconsumptiontime: 39252 s
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | nevents: 400
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | neventsw: 0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | pid: 1765042
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | pgrp: 1765042
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | corecount: 4
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | event service: False
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | sizes: {0: 2397353, 5: 2397559, 11: 2397615, 10254: 2426188, 10257: 2435207, 10264: 2435321}
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | --------------------------------------------------
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | 
[2025-06-05 08:26:52] 2025-06-05 06:24:16,767 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2025-06-05 08:26:52] 2025-06-05 06:24:16,790 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,791 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,792 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,792 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,792 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,792 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 08:26:52] 2025-06-05 06:24:16,792 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,792 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 08:26:52] 2025-06-05 06:24:16,792 | INFO     | job 6677617799 has completed (purged errors)
[2025-06-05 08:26:52] 2025-06-05 06:24:16,792 | INFO     | overall cleanup function is called
[2025-06-05 08:26:52] 2025-06-05 06:24:17,800 | INFO     | --- collectZombieJob: --- 10, [1765042]
[2025-06-05 08:26:52] 2025-06-05 06:24:17,800 | INFO     | zombie collector waiting for pid 1765042
[2025-06-05 08:26:52] 2025-06-05 06:24:17,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 08:26:52] 2025-06-05 06:24:17,801 | INFO     | collected zombie processes
[2025-06-05 08:26:52] 2025-06-05 06:24:17,801 | INFO     | will attempt to kill all subprocesses of pid=1765042
[2025-06-05 08:26:52] 2025-06-05 06:24:18,146 | INFO     | process IDs to be killed: [1765042] (in reverse order)
[2025-06-05 08:26:52] 2025-06-05 06:24:18,260 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 08:26:52] 2025-06-05 06:24:18,261 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 08:26:52] 2025-06-05 06:24:18,272 | INFO     | did not find any defunct processes belonging to 1765042
[2025-06-05 08:26:52] 2025-06-05 06:24:18,283 | INFO     | did not find any defunct processes belonging to 1765042
[2025-06-05 08:26:52] 2025-06-05 06:24:18,284 | INFO     | ready for new job
[2025-06-05 08:26:52] 2025-06-05 06:24:18,284 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 08:26:52] 2025-06-05 06:24:18,286 | INFO     | **************************************
[2025-06-05 08:26:52] 2025-06-05 06:24:18,286 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 08:26:52] 2025-06-05 06:24:18,286 | INFO     | **************************************
[2025-06-05 08:26:52] 2025-06-05 06:24:18,286 | INFO     | 
[2025-06-05 08:26:52] 2025-06-05 06:24:18,290 | INFO     | architecture information:
[2025-06-05 08:26:52] 2025-06-05 06:24:18,290 | INFO     | executing command: cat /etc/os-release
[2025-06-05 08:26:52] 2025-06-05 06:24:18,306 | INFO     | cat /etc/os-release:
[2025-06-05 08:26:52] NAME="CentOS Linux"
[2025-06-05 08:26:52] VERSION="7 (Core)"
[2025-06-05 08:26:52] ID="centos"
[2025-06-05 08:26:52] ID_LIKE="rhel fedora"
[2025-06-05 08:26:52] VERSION_ID="7"
[2025-06-05 08:26:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 08:26:52] ANSI_COLOR="0;31"
[2025-06-05 08:26:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 08:26:52] HOME_URL="https://www.centos.org/"
[2025-06-05 08:26:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 08:26:52] 
[2025-06-05 08:26:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 08:26:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 08:26:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 08:26:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 08:26:52] 
[2025-06-05 08:26:52] 2025-06-05 06:24:18,307 | INFO     | **************************************
[2025-06-05 08:26:52] 2025-06-05 06:24:18,810 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2025-06-05 08:26:52] 2025-06-05 06:24:18,827 | INFO     | sufficient remaining disk space (665318326272 B)
[2025-06-05 08:26:52] 2025-06-05 06:24:18,828 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 08:26:52] 2025-06-05 06:24:18,828 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 08:26:52] 2025-06-05 06:24:18,828 | INFO     | update_server=False
[2025-06-05 08:26:52] 2025-06-05 06:24:18,828 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 08:26:52] 2025-06-05 06:24:18,829 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 08:26:52] 2025-06-05 06:24:18,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 08:26:52] 2025-06-05 06:24:18,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:26:52] 2025-06-05 06:24:18,830 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 08:26:52] 2025-06-05 06:24:18,830 | INFO     | aborting loop
[2025-06-05 08:26:52] 2025-06-05 06:24:18,830 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 08:26:52] 2025-06-05 06:24:18,831 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 08:26:52] 2025-06-05 06:24:19,065 | INFO     | all payload control threads have been joined
[2025-06-05 08:26:52] 2025-06-05 06:24:19,286 | INFO     | all job control threads have been joined
[2025-06-05 08:26:52] 2025-06-05 06:24:19,744 | INFO     | all data control threads have been joined
[2025-06-05 08:26:52] 2025-06-05 06:24:19,830 | INFO     | [job] retrieve thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:19,835 | INFO     | [job] job monitor thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:19,840 | INFO     | [payload] failed_post thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:19,895 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:20,059 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:20,070 | INFO     | [payload] control thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:20,291 | INFO     | [job] control thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:20,450 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 08:26:52] 2025-06-05 06:24:20,541 | INFO     | [data] copytool_in thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:20,749 | INFO     | [data] control thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:20,835 | INFO     | [data] copytool_out thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:21,117 | INFO     | [job] validate thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:21,237 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:21,247 | INFO     | [payload] validate_post thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:21,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 08:26:52] 2025-06-05 06:24:22,781 | INFO     | [job] queue monitor thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:24,456 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:29,738 | INFO     | job.realtimelogging is not enabled
[2025-06-05 08:26:52] 2025-06-05 06:24:30,743 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 08:26:52] 2025-06-05 06:24:32,304 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23086494070592)>', '<ExcThread(monitor, started 23085916874496)>']
[2025-06-05 08:26:52] 2025-06-05 06:24:32,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 08:26:52] 2025-06-05 06:24:32,895 | INFO     | [monitor] control thread has ended
[2025-06-05 08:26:52] 2025-06-05 06:24:37,329 | INFO     | all workflow threads have been joined
[2025-06-05 08:26:52] 2025-06-05 06:24:37,329 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 08:26:52] 2025-06-05 06:24:37,330 | INFO     | traces error code: 0
[2025-06-05 08:26:52] 2025-06-05 06:24:37,330 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 08:26:52] 2025-06-05 06:24:37,485 [wrapper] ==== pilot stdout END ====
[2025-06-05 08:26:52] 2025-06-05 06:24:37,488 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 08:26:52] 2025-06-05 06:24:37,491 [wrapper] pilotpid: 1757809
[2025-06-05 08:26:52] 2025-06-05 06:24:37,494 [wrapper] Pilot exit status: 0
[2025-06-05 08:26:52] 2025-06-05 06:24:37,506 [wrapper] pandaids: 6677617799
[2025-06-05 08:26:52] 2025-06-05 06:24:37,572 [wrapper] cleanup supervisor_pilot 2065269 1757810
[2025-06-05 08:26:52] 2025-06-05 06:24:37,575 [wrapper] Test setup, not cleaning
[2025-06-05 08:26:52] 2025-06-05 06:24:37,578 [wrapper] apfmon messages muted
[2025-06-05 08:26:52] 2025-06-05 06:24:37,582 [wrapper] ==== wrapper stdout END ====
[2025-06-05 08:26:52] 2025-06-05 06:24:37,584 [wrapper] ==== wrapper stderr END ====
[2025-06-05 08:26:52]  *** Error codes and diagnostics ***
[2025-06-05 08:26:52]     "exeErrorCode": 0,
[2025-06-05 08:26:52]     "exeErrorDiag": "",
[2025-06-05 08:26:52]     "pilotErrorCode": 0,
[2025-06-05 08:26:52]     "pilotErrorDiag": "",
[2025-06-05 08:26:52]  *** Listing of results directory ***
[2025-06-05 08:26:52] total 392836
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc    495897 Jun  3 14:14 pilot3.tar.gz
[2025-06-05 08:26:52] -rwx------ 1 boinc boinc     37140 Jun  3 14:21 runpilot2-wrapper.sh
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc      5111 Jun  3 14:21 queuedata.json
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc       100 Jun  5 05:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 08:26:52] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 05:32 run_atlas
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc       105 Jun  5 05:32 job.xml
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc      6636 Jun  5 05:32 init_data.xml
[2025-06-05 08:26:52] -rw-r--r-- 2 boinc boinc 216524429 Jun  5 05:32 EVNT.45006593._001291.pool.root.1
[2025-06-05 08:26:52] -rw-r--r-- 2 boinc boinc     15093 Jun  5 05:32 start_atlas.sh
[2025-06-05 08:26:52] drwxrwx--x 2 boinc boinc      4096 Jun  5 05:32 shared
[2025-06-05 08:26:52] -rw-r--r-- 2 boinc boinc    508882 Jun  5 05:32 input.tar.gz
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc         0 Jun  5 05:32 boinc_lockfile
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc      2525 Jun  5 05:32 pandaJob.out
[2025-06-05 08:26:52] -rw------- 1 boinc boinc    987109 Jun  5 05:32 agis_schedconf.cvmfs.json
[2025-06-05 08:26:52] -rw------- 1 boinc boinc   1598969 Jun  5 05:32 agis_ddmendpoints.agis.ALL.json
[2025-06-05 08:26:52] drwx------ 4 boinc boinc      4096 Jun  5 05:32 pilot3
[2025-06-05 08:26:52] -rw------- 1 boinc boinc 179380628 Jun  5 08:23 HITS.45006595._032076.pool.root.1
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc       528 Jun  5 08:23 boinc_task_state.xml
[2025-06-05 08:26:52] -rw------- 1 boinc boinc        95 Jun  5 08:23 pilot_heartbeat.json
[2025-06-05 08:26:52] -rw------- 1 boinc boinc      1048 Jun  5 08:24 memory_monitor_summary.json
[2025-06-05 08:26:52] -rw------- 1 boinc boinc    295416 Jun  5 08:24 log.45006595._032076.job.log.tgz.1
[2025-06-05 08:26:52] -rw------- 1 boinc boinc      7736 Jun  5 08:24 heartbeat.json
[2025-06-05 08:26:52] -rw------- 1 boinc boinc      4558 Jun  5 08:24 pilotlog.txt
[2025-06-05 08:26:52] -rw------- 1 boinc boinc    964439 Jun  5 08:24 log.45006595._032076.job.log.1
[2025-06-05 08:26:52] -rw------- 1 boinc boinc       357 Jun  5 08:24 output.list
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc       620 Jun  5 08:24 runtime_log
[2025-06-05 08:26:52] -rw------- 1 boinc boinc   1280000 Jun  5 08:24 result.tar.gz
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc      9026 Jun  5 08:24 runtime_log.err
[2025-06-05 08:26:52] -rw------- 1 boinc boinc       666 Jun  5 08:24 efUNDmQpfg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmHaYKDmUrdjen.diag
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc        26 Jun  5 08:26 wrapper_checkpoint.txt
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc      8192 Jun  5 08:26 boinc_mmap_file
[2025-06-05 08:26:52] -rw-r--r-- 1 boinc boinc     20925 Jun  5 08:26 stderr.txt
[2025-06-05 08:26:52] HITS file was successfully produced:
[2025-06-05 08:26:52] -rw------- 1 boinc boinc 179380628 Jun  5 08:23 shared/HITS.pool.root.1
[2025-06-05 08:26:52]  *** Contents of shared directory: ***
[2025-06-05 08:26:52] total 388408
[2025-06-05 08:26:52] -rw-r--r-- 2 boinc boinc 216524429 Jun  5 05:32 ATLAS.root_0
[2025-06-05 08:26:52] -rw-r--r-- 2 boinc boinc     15093 Jun  5 05:32 start_atlas.sh
[2025-06-05 08:26:52] -rw-r--r-- 2 boinc boinc    508882 Jun  5 05:32 input.tar.gz
[2025-06-05 08:26:52] -rw------- 1 boinc boinc 179380628 Jun  5 08:23 HITS.pool.root.1
[2025-06-05 08:26:52] -rw------- 1 boinc boinc   1280000 Jun  5 08:24 result.tar.gz
08:26:54 (1754051): run_atlas exited; CPU time 39636.266933
08:26:54 (1754051): called boinc_finish(0)

</stderr_txt>
]]>

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