Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:54:39 (2764310): wrapper (7.7.26015): starting
10:54:39 (2764310): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 10:54:39] Arguments: --nthreads 8
[2025-06-03 10:54:39] Threads: 8
[2025-06-03 10:54:39] Checking for CVMFS
[2025-06-03 10:54:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 10:54:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 10:54:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 10:54:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 10:54:39] 2.12.6.0 1583849 138228 436700 146746 3 56 24071733 32935936 3664 130560 1 356359651 99.628 364023958 20286 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 10:54:39] CVMFS is ok
[2025-06-03 10:54:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 10:54:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 10:54:39] Further information can be found at the LHC@home message board.
[2025-06-03 10:54:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 10:54:39] Checking for apptainer binary...
[2025-06-03 10:54:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 10:54:39] Running /usr/bin/apptainer --version
[2025-06-03 10:54:39] apptainer version 1.4.1-1.el9
[2025-06-03 10:54:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 10:54:39] c-6-7.aglt2.org
[2025-06-03 10:54:39] apptainer works
[2025-06-03 10:54:39] Set ATHENA_PROC_NUMBER=8
[2025-06-03 10:54:39] Set ATHENA_CORE_NUMBER=8
[2025-06-03 10:54:39] Starting ATLAS job with PandaID=6677617761
[2025-06-03 10:54:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:47:22 (2921014): wrapper (7.7.26015): starting
11:47:22 (2921014): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:47:22] Arguments: --nthreads 8
[2025-06-03 11:47:22] Threads: 8
[2025-06-03 11:47:22] This job has been restarted, cleaning up previous attempt
[2025-06-03 11:47:22] Checking for CVMFS
[2025-06-03 11:47:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:47:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:47:22] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:47:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:47:22] 2.12.6.0 1583849 138281 436616 146748 2 56 24255711 32935936 0 130560 1 356602660 99.628 364094078 20288 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 11:47:22] CVMFS is ok
[2025-06-03 11:47:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 11:47:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 11:47:22] Further information can be found at the LHC@home message board.
[2025-06-03 11:47:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:47:22] Checking for apptainer binary...
[2025-06-03 11:47:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:47:22] Running /usr/bin/apptainer --version
[2025-06-03 11:47:22] apptainer version 1.4.1-1.el9
[2025-06-03 11:47:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:47:23] c-6-7.aglt2.org
[2025-06-03 11:47:23] apptainer works
[2025-06-03 11:47:23] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:47:23] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:47:23] Starting ATLAS job with PandaID=6677617761
[2025-06-03 11:47:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:27:29]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:27:29]  guid=fe5cba0e-e157-40fd-a1b3-2a6a8e9bf507
[2025-06-03 13:27:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 13:27:29]  is_altstaged=None
[2025-06-03 13:27:29]  is_tar=False
[2025-06-03 13:27:29]  lfn=log.45006595._032038.job.log.tgz.1
[2025-06-03 13:27:29]  mtime=0
[2025-06-03 13:27:29]  protocol_id=None
[2025-06-03 13:27:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 13:27:29]  replicas=None
[2025-06-03 13:27:29]  scope=mc23_13p6TeV
[2025-06-03 13:27:29]  status=None
[2025-06-03 13:27:29]  status_code=0
[2025-06-03 13:27:29]  storage_token=
[2025-06-03 13:27:29]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6677617761/log.45006595._032038.job.log.tgz.1
[2025-06-03 13:27:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/56/log.45006595._032038.job.log.tgz.1
[2025-06-03 13:27:29]  workdir=None
[2025-06-03 13:27:29] ]
[2025-06-03 13:27:29] 2025-06-03 17:27:03,245 | INFO     | transferring file log.45006595._032038.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6677617761/log.45006595._032038.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 13:27:29] 2025-06-03 17:27:03,245 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6677617761/log.45006595._032038.job.log.tgz.1 /tmp/boinchome/slots/3/log.45006595._032038.job
[2025-06-03 13:27:29] 2025-06-03 17:27:03,255 | INFO     | adding to output.list: log.45006595._032038.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/56/log.45006595._032038.job.log.tg
[2025-06-03 13:27:29] 2025-06-03 17:27:03,255 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 13:27:29] 2025-06-03 17:27:03,255 | INFO     | summary of transferred files:
[2025-06-03 13:27:29] 2025-06-03 17:27:03,255 | INFO     |  -- lfn=log.45006595._032038.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 13:27:29] 2025-06-03 17:27:03,256 | INFO     | stage-out finished correctly
[2025-06-03 13:27:29] 2025-06-03 17:27:03,311 | INFO     | monitor loop #434: job 0:6677617761 is in state 'finished'
[2025-06-03 13:27:29] 2025-06-03 17:27:03,311 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:27:29] 2025-06-03 17:27:05,812 | INFO     | monitor loop #435: job 0:6677617761 is in state 'finished'
[2025-06-03 13:27:29] 2025-06-03 17:27:05,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:27:29] 2025-06-03 17:27:06,115 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 13:27:29] 2025-06-03 17:27:07,359 | INFO     | job 6677617761 has state=finished
[2025-06-03 13:27:29] 2025-06-03 17:27:07,359 | INFO     | preparing for final server update for job 6677617761 in state='finished'
[2025-06-03 13:27:29] 2025-06-03 17:27:07,359 | INFO     | this job has now completed (state=finished)
[2025-06-03 13:27:29] 2025-06-03 17:27:07,359 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 13:27:29] 2025-06-03 17:27:07,359 | INFO     | log transfer has been attempted: DONE
[2025-06-03 13:27:29] 2025-06-03 17:27:07,359 | INFO     | job 6677617761 has finished - writing final server update
[2025-06-03 13:27:29] 2025-06-03 17:27:07,360 | INFO     | total number of processed events: 400 (read)
[2025-06-03 13:27:29] 2025-06-03 17:27:07,372 | INFO     | executing command: lscpu
[2025-06-03 13:27:29] 2025-06-03 17:27:07,422 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 13:27:29] 2025-06-03 17:27:08,315 | INFO     | monitor loop #436: job 0:6677617761 is in state 'finished'
[2025-06-03 13:27:29] 2025-06-03 17:27:08,315 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:27:29] 2025-06-03 17:27:09,673 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 13:27:29] 2025-06-03 17:27:09,674 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6677617761/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:27:29] 2025-06-03 17:27:09,674 | INFO     | extracted standard info from prmon json
[2025-06-03 13:27:29] 2025-06-03 17:27:09,674 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:27:29] 2025-06-03 17:27:09,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:27:29] 2025-06-03 17:27:09,675 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:27:29] 2025-06-03 17:27:09,675 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:27:29] 2025-06-03 17:27:09,676 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:27:29] 2025-06-03 17:27:09,676 | INFO     | sum of square deviations: 233641590.0
[2025-06-03 13:27:29] 2025-06-03 17:27:09,677 | INFO     | sum of deviations: 10627148611.000002
[2025-06-03 13:27:29] 2025-06-03 17:27:09,677 | INFO     | mean x: 1748968720.0
[2025-06-03 13:27:29] 2025-06-03 17:27:09,677 | INFO     | mean y: 2121173.2747252746
[2025-06-03 13:27:29] 2025-06-03 17:27:09,677 | INFO     | -- intersect: -79549428289.43202
[2025-06-03 13:27:29] 2025-06-03 17:27:09,677 | INFO     | intersect: -79549428289.43202
[2025-06-03 13:27:29] 2025-06-03 17:27:09,677 | INFO     | chi2: 0.8485987066932613
[2025-06-03 13:27:29] 2025-06-03 17:27:09,677 | INFO     | -- intersect: -79549428289.43202
[2025-06-03 13:27:29] 2025-06-03 17:27:09,677 | INFO     | current memory leak: 45.48 B/s (using 91 data points, chi2=0.85)
[2025-06-03 13:27:29] 2025-06-03 17:27:09,677 | INFO     | ..............................
[2025-06-03 13:27:29] 2025-06-03 17:27:09,678 | INFO     | . Timing measurements:
[2025-06-03 13:27:29] 2025-06-03 17:27:09,678 | INFO     | . get job = 0 s
[2025-06-03 13:27:29] 2025-06-03 17:27:09,678 | INFO     | . initial setup = 0 s
[2025-06-03 13:27:29] 2025-06-03 17:27:09,678 | INFO     | . payload setup = 4 s
[2025-06-03 13:27:29] 2025-06-03 17:27:09,678 | INFO     | . stage-in = 0 s
[2025-06-03 13:27:29] 2025-06-03 17:27:09,678 | INFO     | . payload execution = 5952 s
[2025-06-03 13:27:29] 2025-06-03 17:27:09,678 | INFO     | . stage-out = 0 s
[2025-06-03 13:27:29] 2025-06-03 17:27:09,678 | INFO     | . log creation = 0 s
[2025-06-03 13:27:29] 2025-06-03 17:27:09,678 | INFO     | ..............................
[2025-06-03 13:27:29] 2025-06-03 17:27:09,733 | INFO     | 
[2025-06-03 13:27:29] 2025-06-03 17:27:09,733 | INFO     | job summary report
[2025-06-03 13:27:29] 2025-06-03 17:27:09,733 | INFO     | --------------------------------------------------
[2025-06-03 13:27:29] 2025-06-03 17:27:09,733 | INFO     | PanDA job id: 6677617761
[2025-06-03 13:27:29] 2025-06-03 17:27:09,733 | INFO     | task id: 45006595
[2025-06-03 13:27:29] 2025-06-03 17:27:09,733 | INFO     | errors: (none)
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | pilot state: finished 
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | transexitcode: 0
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | exeerrorcode: 0
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | exeerrordiag: 
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | exitcode: 0
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | exitmsg: OK
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | cpuconsumptiontime: 41465 s
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | nevents: 400
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | neventsw: 0
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | pid: 2972048
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | pgrp: 2972048
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | corecount: 8
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | event service: False
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | sizes: {0: 2405184, 3: 2405390, 11: 2405418, 5960: 2432042, 5961: 2440983, 5964: 2441039, 5968: 2441337}
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | --------------------------------------------------
[2025-06-03 13:27:29] 2025-06-03 17:27:09,734 | INFO     | 
[2025-06-03 13:27:29] 2025-06-03 17:27:09,735 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-03 13:27:29] 2025-06-03 17:27:09,744 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,745 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,746 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,746 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,746 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,746 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,746 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:27:29] 2025-06-03 17:27:09,746 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,746 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:27:29] 2025-06-03 17:27:09,746 | INFO     | job 6677617761 has completed (purged errors)
[2025-06-03 13:27:29] 2025-06-03 17:27:09,746 | INFO     | overall cleanup function is called
[2025-06-03 13:27:29] 2025-06-03 17:27:10,753 | INFO     | --- collectZombieJob: --- 10, [2972048]
[2025-06-03 13:27:29] 2025-06-03 17:27:10,754 | INFO     | zombie collector waiting for pid 2972048
[2025-06-03 13:27:29] 2025-06-03 17:27:10,754 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:27:29] 2025-06-03 17:27:10,754 | INFO     | collected zombie processes
[2025-06-03 13:27:29] 2025-06-03 17:27:10,754 | INFO     | will attempt to kill all subprocesses of pid=2972048
[2025-06-03 13:27:29] 2025-06-03 17:27:10,907 | INFO     | process IDs to be killed: [2972048] (in reverse order)
[2025-06-03 13:27:29] 2025-06-03 17:27:10,945 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:27:29] 2025-06-03 17:27:10,945 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:27:29] 2025-06-03 17:27:10,949 | INFO     | did not find any defunct processes belonging to 2972048
[2025-06-03 13:27:29] 2025-06-03 17:27:10,953 | INFO     | did not find any defunct processes belonging to 2972048
[2025-06-03 13:27:29] 2025-06-03 17:27:10,953 | INFO     | ready for new job
[2025-06-03 13:27:29] 2025-06-03 17:27:10,953 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:27:29] 2025-06-03 17:27:10,955 | INFO     | **************************************
[2025-06-03 13:27:29] 2025-06-03 17:27:10,955 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:27:29] 2025-06-03 17:27:10,955 | INFO     | **************************************
[2025-06-03 13:27:29] 2025-06-03 17:27:10,955 | INFO     | 
[2025-06-03 13:27:29] 2025-06-03 17:27:10,968 | INFO     | architecture information:
[2025-06-03 13:27:29] 2025-06-03 17:27:10,968 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:27:29] 2025-06-03 17:27:10,975 | INFO     | cat /etc/os-release:
[2025-06-03 13:27:29] NAME="CentOS Linux"
[2025-06-03 13:27:29] VERSION="7 (Core)"
[2025-06-03 13:27:29] ID="centos"
[2025-06-03 13:27:29] ID_LIKE="rhel fedora"
[2025-06-03 13:27:29] VERSION_ID="7"
[2025-06-03 13:27:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:27:29] ANSI_COLOR="0;31"
[2025-06-03 13:27:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:27:29] HOME_URL="https://www.centos.org/"
[2025-06-03 13:27:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:27:29] 
[2025-06-03 13:27:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:27:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:27:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:27:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:27:29] 
[2025-06-03 13:27:29] 2025-06-03 17:27:10,975 | INFO     | **************************************
[2025-06-03 13:27:29] 2025-06-03 17:27:11,478 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-03 13:27:29] 2025-06-03 17:27:11,486 | INFO     | sufficient remaining disk space (73651978240 B)
[2025-06-03 13:27:29] 2025-06-03 17:27:11,486 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:27:29] 2025-06-03 17:27:11,486 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:27:29] 2025-06-03 17:27:11,486 | INFO     | update_server=False
[2025-06-03 13:27:29] 2025-06-03 17:27:11,486 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:27:29] 2025-06-03 17:27:11,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:27:29] 2025-06-03 17:27:11,486 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:27:29] 2025-06-03 17:27:11,822 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:27:29] 2025-06-03 17:27:11,822 | INFO     | aborting loop
[2025-06-03 13:27:29] 2025-06-03 17:27:11,868 | INFO     | all payload control threads have been joined
[2025-06-03 13:27:29] 2025-06-03 17:27:12,173 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:27:29] 2025-06-03 17:27:12,335 | INFO     | all data control threads have been joined
[2025-06-03 13:27:29] 2025-06-03 17:27:12,348 | INFO     | all job control threads have been joined
[2025-06-03 13:27:29] 2025-06-03 17:27:12,394 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:27:29] 2025-06-03 17:27:12,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:27:29] 2025-06-03 17:27:12,395 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:27:29] 2025-06-03 17:27:12,491 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:12,492 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:12,532 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:12,621 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:12,649 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:12,688 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:12,827 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:12,840 | INFO     | [job] validate thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:12,873 | INFO     | [payload] control thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:13,182 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:13,194 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:13,340 | INFO     | [data] control thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:13,354 | INFO     | [job] control thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:13,492 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:16,178 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:22,286 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:27:29] 2025-06-03 17:27:23,292 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:27:29] 2025-06-03 17:27:24,629 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038674237248)>', '<ExcThread(monitor, started 140038163633920)>']
[2025-06-03 13:27:29] 2025-06-03 17:27:25,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:27:29] 2025-06-03 17:27:25,459 | INFO     | [monitor] control thread has ended
[2025-06-03 13:27:29] 2025-06-03 17:27:29,646 | INFO     | all workflow threads have been joined
[2025-06-03 13:27:29] 2025-06-03 17:27:29,646 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:27:29] 2025-06-03 17:27:29,646 | INFO     | traces error code: 0
[2025-06-03 13:27:29] 2025-06-03 17:27:29,646 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:27:29] 2025-06-03 17:27:29,706 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:27:29] 2025-06-03 17:27:29,708 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:27:29] 2025-06-03 17:27:29,710 [wrapper] pilotpid: 2939114
[2025-06-03 13:27:29] 2025-06-03 17:27:29,711 [wrapper] Pilot exit status: 0
[2025-06-03 13:27:29] 2025-06-03 17:27:29,717 [wrapper] pandaids: 6677617761 6677617761
[2025-06-03 13:27:29] 2025-06-03 17:27:29,745 [wrapper] cleanup supervisor_pilot 3175203 2939118
[2025-06-03 13:27:29] 2025-06-03 17:27:29,746 [wrapper] Test setup, not cleaning
[2025-06-03 13:27:29] 2025-06-03 17:27:29,748 [wrapper] apfmon messages muted
[2025-06-03 13:27:29] 2025-06-03 17:27:29,749 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:27:29] 2025-06-03 17:27:29,751 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:27:29]  *** Error codes and diagnostics ***
[2025-06-03 13:27:29]     "exeErrorCode": 0,
[2025-06-03 13:27:29]     "exeErrorDiag": "",
[2025-06-03 13:27:29]     "pilotErrorCode": 0,
[2025-06-03 13:27:29]     "pilotErrorDiag": "",
[2025-06-03 13:27:29]  *** Listing of results directory ***
[2025-06-03 13:27:29] total 601792
[2025-06-03 13:27:29] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 08:14 pilot3.tar.gz
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 08:17 queuedata.json
[2025-06-03 13:27:29] -rwx------. 1 boincer umatlas     37140 Jun  3 08:18 runpilot2-wrapper.sh
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas       100 Jun  3 10:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:27:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 10:54 run_atlas
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas       105 Jun  3 10:54 job.xml
[2025-06-03 13:27:29] -rw-r--r--. 3 boincer umatlas 215434628 Jun  3 10:54 EVNT.45006593._001289.pool.root.1
[2025-06-03 13:27:29] -rw-r--r--. 3 boincer umatlas 215434628 Jun  3 10:54 ATLAS.root_0
[2025-06-03 13:27:29] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 10:54 start_atlas.sh
[2025-06-03 13:27:29] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 10:54 shared
[2025-06-03 13:27:29] -rw-r--r--. 2 boincer umatlas    508886 Jun  3 10:54 input.tar.gz
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas         0 Jun  3 10:54 boinc_lockfile
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas   1603667 Jun  3 10:54 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 11:47 pandaJob.out
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas    983735 Jun  3 11:47 agis_schedconf.cvmfs.json
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas      6659 Jun  3 13:20 init_data.xml
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas        96 Jun  3 13:26 pilot_heartbeat.json
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas       529 Jun  3 13:26 boinc_task_state.xml
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas 179740162 Jun  3 13:26 HITS.45006595._032038.pool.root.1
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas      1032 Jun  3 13:26 memory_monitor_summary.json
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas    329230 Jun  3 13:27 log.45006595._032038.job.log.tgz.1
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas      7705 Jun  3 13:27 heartbeat.json
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 13:27 boinc_mmap_file
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas        27 Jun  3 13:27 wrapper_checkpoint.txt
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas      4425 Jun  3 13:27 pilotlog.txt
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas    566995 Jun  3 13:27 log.45006595._032038.job.log.1
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas       357 Jun  3 13:27 output.list
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas       620 Jun  3 13:27 runtime_log
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas    911360 Jun  3 13:27 result.tar.gz
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas      8729 Jun  3 13:27 runtime_log.err
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas       774 Jun  3 13:27 fVHNDmLmfg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmu0jKDmaJ4u2n.diag
[2025-06-03 13:27:29] -rw-r--r--. 1 boincer umatlas     23443 Jun  3 13:27 stderr.txt
[2025-06-03 13:27:29] HITS file was successfully produced:
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas 179740162 Jun  3 13:26 shared/HITS.pool.root.1
[2025-06-03 13:27:29]  *** Contents of shared directory: ***
[2025-06-03 13:27:29] total 387328
[2025-06-03 13:27:29] -rw-r--r--. 3 boincer umatlas 215434628 Jun  3 10:54 ATLAS.root_0
[2025-06-03 13:27:29] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 10:54 start_atlas.sh
[2025-06-03 13:27:29] -rw-r--r--. 2 boincer umatlas    508886 Jun  3 10:54 input.tar.gz
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas 179740162 Jun  3 13:26 HITS.pool.root.1
[2025-06-03 13:27:29] -rw-------. 1 boincer umatlas    911360 Jun  3 13:27 result.tar.gz
13:27:31 (2921014): run_atlas exited; CPU time 41550.981877
13:27:31 (2921014): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN