Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:35:22 (26737): wrapper (7.7.26015): starting
10:35:22 (26737): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 10:35:22] Arguments: --nthreads 8
[2025-06-03 10:35:22] Threads: 8
[2025-06-03 10:35:22] Checking for CVMFS
[2025-06-03 10:35:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 10:35:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 10:35:23] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 10:35:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 10:35:23] 2.11.2.0 2861 17334 95244 146746 2 55 10741979 20275200 1 130560 0 7549667 99.952 3634766 4483 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 10:35:23] CVMFS is ok
[2025-06-03 10:35:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 10:35:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 10:35:23] Further information can be found at the LHC@home message board.
[2025-06-03 10:35:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 10:35:23] Checking for apptainer binary...
[2025-06-03 10:35:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 10:35:23] Running /usr/bin/apptainer --version
[2025-06-03 10:35:23] apptainer version 1.3.2-1.el7
[2025-06-03 10:35:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 10:35:24] c-204-18.aglt2.org
[2025-06-03 10:35:24] apptainer works
[2025-06-03 10:35:24] Set ATHENA_PROC_NUMBER=8
[2025-06-03 10:35:24] Set ATHENA_CORE_NUMBER=8
[2025-06-03 10:35:24] Starting ATLAS job with PandaID=6677616703
[2025-06-03 10:35:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:35:34]  *** The last 200 lines of the pilot log: ***
[2025-06-03 12:35:34] 2025-06-03 16:35:11,070 | INFO     | executing command: lscpu
[2025-06-03 12:35:34] 2025-06-03 16:35:11,134 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 12:35:34] 2025-06-03 16:35:11,274 | INFO     | monitor loop #531: job 0:6677616703 is in state 'finished'
[2025-06-03 12:35:34] 2025-06-03 16:35:11,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 12:35:34] 2025-06-03 16:35:13,790 | INFO     | monitor loop #532: job 0:6677616703 is in state 'finished'
[2025-06-03 12:35:34] 2025-06-03 16:35:13,790 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 12:35:34] 2025-06-03 16:35:14,968 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-03 12:35:34] 2025-06-03 16:35:14,968 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677616703/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 12:35:34] 2025-06-03 16:35:14,969 | INFO     | extracted standard info from prmon json
[2025-06-03 12:35:34] 2025-06-03 16:35:14,969 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 12:35:34] 2025-06-03 16:35:14,969 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 12:35:34] 2025-06-03 16:35:14,969 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 12:35:34] 2025-06-03 16:35:14,970 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 12:35:34] 2025-06-03 16:35:14,972 | INFO     | fitting pss+swap vs Time
[2025-06-03 12:35:34] 2025-06-03 16:35:14,973 | INFO     | sum of square deviations: 496597218.0
[2025-06-03 12:35:34] 2025-06-03 16:35:14,973 | INFO     | sum of deviations: -4427162596.000001
[2025-06-03 12:35:34] 2025-06-03 16:35:14,973 | INFO     | mean x: 1748964912.0
[2025-06-03 12:35:34] 2025-06-03 16:35:14,973 | INFO     | mean y: 2541929.0085470085
[2025-06-03 12:35:34] 2025-06-03 16:35:14,974 | INFO     | -- intersect: 15594558475.752134
[2025-06-03 12:35:34] 2025-06-03 16:35:14,974 | INFO     | intersect: 15594558475.752134
[2025-06-03 12:35:34] 2025-06-03 16:35:14,974 | INFO     | chi2: 1.6553271572158421
[2025-06-03 12:35:34] 2025-06-03 16:35:14,974 | INFO     | sum of square deviations: 435610028.0
[2025-06-03 12:35:34] 2025-06-03 16:35:14,975 | INFO     | sum of deviations: -3618393241.999999
[2025-06-03 12:35:34] 2025-06-03 16:35:14,975 | INFO     | mean x: 1748964759.5
[2025-06-03 12:35:34] 2025-06-03 16:35:14,975 | INFO     | mean y: 2543952.6071428573
[2025-06-03 12:35:34] 2025-06-03 16:35:14,975 | INFO     | -- intersect: 14530313883.263912
[2025-06-03 12:35:34] 2025-06-03 16:35:14,975 | INFO     | intersect: 14530313883.263912
[2025-06-03 12:35:34] 2025-06-03 16:35:14,976 | INFO     | chi2: 1.6567270245894936
[2025-06-03 12:35:34] 2025-06-03 16:35:14,976 | INFO     | current chi2=1.6567270245894936 (change=-0.08456741421472165 %)
[2025-06-03 12:35:34] 2025-06-03 16:35:14,976 | INFO     | right removable region: 111
[2025-06-03 12:35:34] 2025-06-03 16:35:14,976 | INFO     | sum of square deviations: 435610028.0
[2025-06-03 12:35:34] 2025-06-03 16:35:14,977 | INFO     | sum of deviations: -22542223558.5
[2025-06-03 12:35:34] 2025-06-03 16:35:14,977 | INFO     | mean x: 1748965064.5
[2025-06-03 12:35:34] 2025-06-03 16:35:14,977 | INFO     | mean y: 2586352.1875
[2025-06-03 12:35:34] 2025-06-03 16:35:14,977 | INFO     | -- intersect: 90509137959.77669
[2025-06-03 12:35:34] 2025-06-03 16:35:14,977 | INFO     | intersect: 90509137959.77669
[2025-06-03 12:35:34] 2025-06-03 16:35:14,977 | INFO     | chi2: 0.10358701938889361
[2025-06-03 12:35:34] 2025-06-03 16:35:14,978 | INFO     | current chi2=0.10358701938889361 (change=93.74220262518253 %)
[2025-06-03 12:35:34] 2025-06-03 16:35:14,978 | INFO     | sum of square deviations: 379832238.0
[2025-06-03 12:35:34] 2025-06-03 16:35:14,978 | INFO     | sum of deviations: -20242550917.000004
[2025-06-03 12:35:34] 2025-06-03 16:35:14,978 | INFO     | mean x: 1748965217.0
[2025-06-03 12:35:34] 2025-06-03 16:35:14,979 | INFO     | mean y: 2580036.962616822
[2025-06-03 12:35:34] 2025-06-03 16:35:14,979 | INFO     | -- intersect: 93210880742.56113
[2025-06-03 12:35:34] 2025-06-03 16:35:14,979 | INFO     | intersect: 93210880742.56113
[2025-06-03 12:35:34] 2025-06-03 16:35:14,979 | INFO     | chi2: 0.10239557992120782
[2025-06-03 12:35:34] 2025-06-03 16:35:14,979 | INFO     | current chi2=0.10239557992120782 (change=1.1501822088468538 %)
[2025-06-03 12:35:34] 2025-06-03 16:35:14,979 | INFO     | left removable region: 20
[2025-06-03 12:35:34] 2025-06-03 16:35:14,980 | INFO     | sum of square deviations: 233641590.0
[2025-06-03 12:35:34] 2025-06-03 16:35:14,980 | INFO     | sum of deviations: -13104727051.0
[2025-06-03 12:35:34] 2025-06-03 16:35:14,980 | INFO     | mean x: 1748965339.0
[2025-06-03 12:35:34] 2025-06-03 16:35:14,980 | INFO     | mean y: 2565312.7802197803
[2025-06-03 12:35:34] 2025-06-03 16:35:14,980 | INFO     | -- intersect: 98100311477.12828
[2025-06-03 12:35:34] 2025-06-03 16:35:14,980 | INFO     | intersect: 98100311477.12828
[2025-06-03 12:35:34] 2025-06-03 16:35:14,981 | INFO     | chi2: 0.09397524854122842
[2025-06-03 12:35:34] 2025-06-03 16:35:14,981 | INFO     | -- intersect: 98100311477.12828
[2025-06-03 12:35:34] 2025-06-03 16:35:14,981 | INFO     | current memory leak: -56.09 B/s (using 91 data points, chi2=0.09)
[2025-06-03 12:35:34] 2025-06-03 16:35:14,981 | INFO     | ..............................
[2025-06-03 12:35:34] 2025-06-03 16:35:14,982 | INFO     | . Timing measurements:
[2025-06-03 12:35:34] 2025-06-03 16:35:14,982 | INFO     | . get job = 0 s
[2025-06-03 12:35:34] 2025-06-03 16:35:14,982 | INFO     | . initial setup = 2 s
[2025-06-03 12:35:34] 2025-06-03 16:35:14,982 | INFO     | . payload setup = 11 s
[2025-06-03 12:35:34] 2025-06-03 16:35:14,982 | INFO     | . stage-in = 0 s
[2025-06-03 12:35:34] 2025-06-03 16:35:14,982 | INFO     | . payload execution = 7136 s
[2025-06-03 12:35:34] 2025-06-03 16:35:14,982 | INFO     | . stage-out = 0 s
[2025-06-03 12:35:34] 2025-06-03 16:35:14,982 | INFO     | . log creation = 0 s
[2025-06-03 12:35:34] 2025-06-03 16:35:14,983 | INFO     | ..............................
[2025-06-03 12:35:34] 2025-06-03 16:35:15,392 | INFO     | 
[2025-06-03 12:35:34] 2025-06-03 16:35:15,392 | INFO     | job summary report
[2025-06-03 12:35:34] 2025-06-03 16:35:15,392 | INFO     | --------------------------------------------------
[2025-06-03 12:35:34] 2025-06-03 16:35:15,392 | INFO     | PanDA job id: 6677616703
[2025-06-03 12:35:34] 2025-06-03 16:35:15,392 | INFO     | task id: 45006595
[2025-06-03 12:35:34] 2025-06-03 16:35:15,392 | INFO     | errors: (none)
[2025-06-03 12:35:34] 2025-06-03 16:35:15,393 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 12:35:34] 2025-06-03 16:35:15,393 | INFO     | pilot state: finished 
[2025-06-03 12:35:34] 2025-06-03 16:35:15,393 | INFO     | transexitcode: 0
[2025-06-03 12:35:34] 2025-06-03 16:35:15,393 | INFO     | exeerrorcode: 0
[2025-06-03 12:35:34] 2025-06-03 16:35:15,393 | INFO     | exeerrordiag: 
[2025-06-03 12:35:34] 2025-06-03 16:35:15,393 | INFO     | exitcode: 0
[2025-06-03 12:35:34] 2025-06-03 16:35:15,393 | INFO     | exitmsg: OK
[2025-06-03 12:35:34] 2025-06-03 16:35:15,393 | INFO     | cpuconsumptiontime: 51256 s
[2025-06-03 12:35:34] 2025-06-03 16:35:15,394 | INFO     | nevents: 400
[2025-06-03 12:35:34] 2025-06-03 16:35:15,394 | INFO     | neventsw: 0
[2025-06-03 12:35:34] 2025-06-03 16:35:15,394 | INFO     | pid: 4627
[2025-06-03 12:35:34] 2025-06-03 16:35:15,394 | INFO     | pgrp: 4627
[2025-06-03 12:35:34] 2025-06-03 16:35:15,394 | INFO     | corecount: 8
[2025-06-03 12:35:34] 2025-06-03 16:35:15,394 | INFO     | event service: False
[2025-06-03 12:35:34] 2025-06-03 16:35:15,394 | INFO     | sizes: {0: 2405013, 1: 2405212, 6: 2405418, 12: 2405446, 7151: 2432546, 7152: 2441487, 7154: 2441671, 7158: 2441841}
[2025-06-03 12:35:34] 2025-06-03 16:35:15,394 | INFO     | --------------------------------------------------
[2025-06-03 12:35:34] 2025-06-03 16:35:15,394 | INFO     | 
[2025-06-03 12:35:34] 2025-06-03 16:35:15,395 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 12:35:34] 2025-06-03 16:35:15,416 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,417 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,417 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,417 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,417 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,417 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,417 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,417 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,417 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,418 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,418 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,418 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,418 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,418 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,418 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,418 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,418 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,419 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 12:35:34] 2025-06-03 16:35:15,419 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,419 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 12:35:34] 2025-06-03 16:35:15,419 | INFO     | job 6677616703 has completed (purged errors)
[2025-06-03 12:35:34] 2025-06-03 16:35:15,419 | INFO     | overall cleanup function is called
[2025-06-03 12:35:34] 2025-06-03 16:35:16,423 | INFO     | --- collectZombieJob: --- 10, [4627]
[2025-06-03 12:35:34] 2025-06-03 16:35:16,425 | INFO     | zombie collector waiting for pid 4627
[2025-06-03 12:35:34] 2025-06-03 16:35:16,425 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 12:35:34] 2025-06-03 16:35:16,425 | INFO     | collected zombie processes
[2025-06-03 12:35:34] 2025-06-03 16:35:16,425 | INFO     | will attempt to kill all subprocesses of pid=4627
[2025-06-03 12:35:34] 2025-06-03 16:35:16,521 | INFO     | process IDs to be killed: [4627] (in reverse order)
[2025-06-03 12:35:34] 2025-06-03 16:35:16,568 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 12:35:34] 2025-06-03 16:35:16,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 12:35:34] 2025-06-03 16:35:16,572 | INFO     | did not find any defunct processes belonging to 4627
[2025-06-03 12:35:34] 2025-06-03 16:35:16,575 | INFO     | did not find any defunct processes belonging to 4627
[2025-06-03 12:35:34] 2025-06-03 16:35:16,575 | INFO     | ready for new job
[2025-06-03 12:35:34] 2025-06-03 16:35:16,575 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 12:35:34] 2025-06-03 16:35:16,577 | INFO     | **************************************
[2025-06-03 12:35:34] 2025-06-03 16:35:16,577 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 12:35:34] 2025-06-03 16:35:16,577 | INFO     | **************************************
[2025-06-03 12:35:34] 2025-06-03 16:35:16,577 | INFO     | 
[2025-06-03 12:35:34] 2025-06-03 16:35:16,578 | INFO     | architecture information:
[2025-06-03 12:35:34] 2025-06-03 16:35:16,578 | INFO     | executing command: cat /etc/os-release
[2025-06-03 12:35:34] 2025-06-03 16:35:16,593 | INFO     | cat /etc/os-release:
[2025-06-03 12:35:34] NAME="CentOS Linux"
[2025-06-03 12:35:34] VERSION="7 (Core)"
[2025-06-03 12:35:34] ID="centos"
[2025-06-03 12:35:34] ID_LIKE="rhel fedora"
[2025-06-03 12:35:34] VERSION_ID="7"
[2025-06-03 12:35:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 12:35:34] ANSI_COLOR="0;31"
[2025-06-03 12:35:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 12:35:34] HOME_URL="https://www.centos.org/"
[2025-06-03 12:35:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 12:35:34] 
[2025-06-03 12:35:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 12:35:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 12:35:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 12:35:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 12:35:34] 
[2025-06-03 12:35:34] 2025-06-03 16:35:16,594 | INFO     | **************************************
[2025-06-03 12:35:34] 2025-06-03 16:35:17,097 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 12:35:34] 2025-06-03 16:35:17,113 | INFO     | sufficient remaining disk space (18610126848 B)
[2025-06-03 12:35:34] 2025-06-03 16:35:17,114 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 12:35:34] 2025-06-03 16:35:17,114 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 12:35:34] 2025-06-03 16:35:17,114 | INFO     | update_server=False
[2025-06-03 12:35:34] 2025-06-03 16:35:17,114 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 12:35:34] 2025-06-03 16:35:17,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 12:35:34] 2025-06-03 16:35:17,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 12:35:34] 2025-06-03 16:35:17,115 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 12:35:34] 2025-06-03 16:35:17,116 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 12:35:34] 2025-06-03 16:35:17,116 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 12:35:34] 2025-06-03 16:35:17,116 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 12:35:34] 2025-06-03 16:35:17,298 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:35:34] 2025-06-03 16:35:17,299 | INFO     | aborting loop
[2025-06-03 12:35:34] 2025-06-03 16:35:17,838 | INFO     | all job control threads have been joined
[2025-06-03 12:35:34] 2025-06-03 16:35:17,874 | INFO     | all payload control threads have been joined
[2025-06-03 12:35:34] 2025-06-03 16:35:18,024 | INFO     | all data control threads have been joined
[2025-06-03 12:35:34] 2025-06-03 16:35:18,120 | INFO     | [job] retrieve thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:18,284 | INFO     | [data] copytool_in thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:18,304 | INFO     | [job] job monitor thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:18,655 | INFO     | [payload] validate_post thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:18,723 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:18,843 | INFO     | [job] control thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:18,879 | INFO     | [payload] control thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:18,998 | INFO     | [payload] failed_post thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:19,029 | INFO     | [data] control thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:19,121 | INFO     | [data] copytool_out thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:19,317 | INFO     | [job] validate thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:19,501 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:19,538 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:20,090 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:35:34] 2025-06-03 16:35:21,095 | INFO     | [job] queue monitor thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:21,121 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:27,786 | INFO     | job.realtimelogging is not enabled
[2025-06-03 12:35:34] 2025-06-03 16:35:28,792 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 12:35:34] 2025-06-03 16:35:29,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140622474405696)>', '<ExcThread(monitor, started 140621876532992)>']
[2025-06-03 12:35:34] 2025-06-03 16:35:30,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 12:35:34] 2025-06-03 16:35:30,188 | INFO     | [monitor] control thread has ended
[2025-06-03 12:35:34] 2025-06-03 16:35:34,243 | INFO     | all workflow threads have been joined
[2025-06-03 12:35:34] 2025-06-03 16:35:34,244 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 12:35:34] 2025-06-03 16:35:34,244 | INFO     | traces error code: 0
[2025-06-03 12:35:34] 2025-06-03 16:35:34,245 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 12:35:34] 2025-06-03 16:35:34,379 [wrapper] ==== pilot stdout END ====
[2025-06-03 12:35:34] 2025-06-03 16:35:34,382 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 12:35:34] 2025-06-03 16:35:34,385 [wrapper] pilotpid: 30324
[2025-06-03 12:35:34] 2025-06-03 16:35:34,388 [wrapper] Pilot exit status: 0
[2025-06-03 12:35:34] 2025-06-03 16:35:34,399 [wrapper] pandaids: 6677616703
[2025-06-03 12:35:34] 2025-06-03 16:35:34,431 [wrapper] cleanup supervisor_pilot 26241 30325
[2025-06-03 12:35:34] 2025-06-03 16:35:34,434 [wrapper] Test setup, not cleaning
[2025-06-03 12:35:34] 2025-06-03 16:35:34,437 [wrapper] apfmon messages muted
[2025-06-03 12:35:34] 2025-06-03 16:35:34,441 [wrapper] ==== wrapper stdout END ====
[2025-06-03 12:35:34] 2025-06-03 16:35:34,444 [wrapper] ==== wrapper stderr END ====
[2025-06-03 12:35:34]  *** Error codes and diagnostics ***
[2025-06-03 12:35:34]     "exeErrorCode": 0,
[2025-06-03 12:35:34]     "exeErrorDiag": "",
[2025-06-03 12:35:34]     "pilotErrorCode": 0,
[2025-06-03 12:35:34]     "pilotErrorDiag": "",
[2025-06-03 12:35:34]  *** Listing of results directory ***
[2025-06-03 12:35:34] total 391996
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 07:50 pilot3.tar.gz
[2025-06-03 12:35:34] -rwx------ 1 boincer umatlas     37140 Jun  3 07:59 runpilot2-wrapper.sh
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 07:59 queuedata.json
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas       100 Jun  3 10:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 12:35:34] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 10:35 run_atlas
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas       105 Jun  3 10:35 job.xml
[2025-06-03 12:35:34] -rw-r--r-- 2 boincer umatlas 212761042 Jun  3 10:35 EVNT.45006593._001268.pool.root.1
[2025-06-03 12:35:34] drwxrwx--x 2 boincer umatlas      4096 Jun  3 10:35 shared
[2025-06-03 12:35:34] -rw-r--r-- 2 boincer umatlas    508882 Jun  3 10:35 input.tar.gz
[2025-06-03 12:35:34] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 10:35 start_atlas.sh
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas         0 Jun  3 10:35 boinc_lockfile
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 10:35 pandaJob.out
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas    982716 Jun  3 10:35 agis_schedconf.cvmfs.json
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas   1603667 Jun  3 10:35 agis_ddmendpoints.agis.ALL.json
[2025-06-03 12:35:34] drwx------ 4 boincer umatlas      4096 Jun  3 10:35 pilot3
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas      5904 Jun  3 12:27 init_data.xml
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas        95 Jun  3 12:34 pilot_heartbeat.json
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas 182843922 Jun  3 12:34 HITS.45006595._031534.pool.root.1
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas       529 Jun  3 12:34 boinc_task_state.xml
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas      1056 Jun  3 12:35 memory_monitor_summary.json
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas    333523 Jun  3 12:35 log.45006595._031534.job.log.tgz.1
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas      7757 Jun  3 12:35 heartbeat.json
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas        27 Jun  3 12:35 wrapper_checkpoint.txt
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 12:35 boinc_mmap_file
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas      4548 Jun  3 12:35 pilotlog.txt
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas    654487 Jun  3 12:35 log.45006595._031534.job.log.1
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas       357 Jun  3 12:35 output.list
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas       620 Jun  3 12:35 runtime_log
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas   1003520 Jun  3 12:35 result.tar.gz
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas      8659 Jun  3 12:35 runtime_log.err
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas       660 Jun  3 12:35 BQNKDmMUfg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm3XYKDmYF9tYm.diag
[2025-06-03 12:35:34] -rw-r--r-- 1 boincer umatlas     21084 Jun  3 12:35 stderr.txt
[2025-06-03 12:35:34] HITS file was successfully produced:
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas 182843922 Jun  3 12:34 shared/HITS.pool.root.1
[2025-06-03 12:35:34]  *** Contents of shared directory: ***
[2025-06-03 12:35:34] total 387836
[2025-06-03 12:35:34] -rw-r--r-- 2 boincer umatlas 212761042 Jun  3 10:35 ATLAS.root_0
[2025-06-03 12:35:34] -rw-r--r-- 2 boincer umatlas    508882 Jun  3 10:35 input.tar.gz
[2025-06-03 12:35:34] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 10:35 start_atlas.sh
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas 182843922 Jun  3 12:34 HITS.pool.root.1
[2025-06-03 12:35:34] -rw------- 1 boincer umatlas   1003520 Jun  3 12:35 result.tar.gz
12:35:35 (26737): run_atlas exited; CPU time 51158.403022
12:35:35 (26737): called boinc_finish(0)

</stderr_txt>
]]>

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