Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:43:52 (12661): wrapper (7.7.26015): starting
01:43:52 (12661): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 01:43:52] Arguments: --nthreads 8
[2025-06-04 01:43:52] Threads: 8
[2025-06-04 01:43:52] Checking for CVMFS
[2025-06-04 01:43:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 01:43:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 01:43:53] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 01:43:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 01:43:54] 2.11.2.0 7869 32456 89664 146761 3 103 12728508 25165824 3495 130560 0 16121488 99.769 19424824 1996 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 01:43:54] CVMFS is ok
[2025-06-04 01:43:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 01:43:54] Checking for apptainer binary...
[2025-06-04 01:43:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 01:43:54] Running /usr/bin/apptainer --version
[2025-06-04 01:43:54] apptainer version 1.3.2-1.el7
[2025-06-04 01:43:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:45:27] cg-vwn276.simple-grid.lan
[2025-06-04 01:45:27] apptainer works
[2025-06-04 01:45:27] Set ATHENA_PROC_NUMBER=8
[2025-06-04 01:45:27] Set ATHENA_CORE_NUMBER=8
[2025-06-04 01:45:27] Starting ATLAS job with PandaID=6677601260
[2025-06-04 01:45:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 06:04:00]  *** The last 200 lines of the pilot log: ***
[2025-06-04 06:04:00] 2025-06-04 03:33:20,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 06:04:00] 2025-06-04 03:33:20,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 06:04:00] 2025-06-04 03:33:20,383 | INFO     | fitting pss+swap vs Time
[2025-06-04 06:04:00] 2025-06-04 03:33:20,383 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,385 | INFO     | sum of deviations: -8965039704.000008
[2025-06-04 06:04:00] 2025-06-04 03:33:20,385 | INFO     | mean x: 1749001353.5
[2025-06-04 06:04:00] 2025-06-04 03:33:20,385 | INFO     | mean y: 2478983.953703704
[2025-06-04 06:04:00] 2025-06-04 03:33:20,386 | INFO     | -- intersect: 5020263349.190292
[2025-06-04 06:04:00] 2025-06-04 03:33:20,386 | INFO     | intersect: 5020263349.190292
[2025-06-04 06:04:00] 2025-06-04 03:33:20,386 | INFO     | chi2: 2.479509394537252
[2025-06-04 06:04:00] 2025-06-04 03:33:20,386 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,388 | INFO     | sum of deviations: 5377410896.999999
[2025-06-04 06:04:00] 2025-06-04 03:33:20,388 | INFO     | mean x: 1749001201.0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,388 | INFO     | mean y: 2489107.952606635
[2025-06-04 06:04:00] 2025-06-04 03:33:20,389 | INFO     | -- intersect: -3226356623.435988
[2025-06-04 06:04:00] 2025-06-04 03:33:20,389 | INFO     | intersect: -3226356623.435988
[2025-06-04 06:04:00] 2025-06-04 03:33:20,389 | INFO     | chi2: 1.7100415427387896
[2025-06-04 06:04:00] 2025-06-04 03:33:20,389 | INFO     | current chi2=1.7100415427387896 (change=31.033068618079074 %)
[2025-06-04 06:04:00] 2025-06-04 03:33:20,389 | INFO     | sum of square deviations: 2710627567.5
[2025-06-04 06:04:00] 2025-06-04 03:33:20,391 | INFO     | sum of deviations: 5280739164.499995
[2025-06-04 06:04:00] 2025-06-04 03:33:20,391 | INFO     | mean x: 1749001048.5
[2025-06-04 06:04:00] 2025-06-04 03:33:20,391 | INFO     | mean y: 2489034.8203883497
[2025-06-04 06:04:00] 2025-06-04 03:33:20,391 | INFO     | -- intersect: -3404846759.408195
[2025-06-04 06:04:00] 2025-06-04 03:33:20,392 | INFO     | intersect: -3404846759.408195
[2025-06-04 06:04:00] 2025-06-04 03:33:20,392 | INFO     | chi2: 1.7105279746398203
[2025-06-04 06:04:00] 2025-06-04 03:33:20,392 | INFO     | current chi2=1.7105279746398203 (change=-0.02844561894394906 %)
[2025-06-04 06:04:00] 2025-06-04 03:33:20,392 | INFO     | right removable region: 205
[2025-06-04 06:04:00] 2025-06-04 03:33:20,393 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,400 | INFO     | sum of deviations: -42957266097.0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,401 | INFO     | mean x: 1749001506.0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,401 | INFO     | mean y: 2503194.440758294
[2025-06-04 06:04:00] 2025-06-04 03:33:20,401 | INFO     | -- intersect: 25796033224.748142
[2025-06-04 06:04:00] 2025-06-04 03:33:20,401 | INFO     | intersect: 25796033224.748142
[2025-06-04 06:04:00] 2025-06-04 03:33:20,401 | INFO     | chi2: 0.9730427878388388
[2025-06-04 06:04:00] 2025-06-04 03:33:20,402 | INFO     | current chi2=0.9730427878388388 (change=60.756640407065824 %)
[2025-06-04 06:04:00] 2025-06-04 03:33:20,402 | INFO     | sum of square deviations: 2710627567.5
[2025-06-04 06:04:00] 2025-06-04 03:33:20,404 | INFO     | sum of deviations: -40185621175.0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,404 | INFO     | mean x: 1749001658.5
[2025-06-04 06:04:00] 2025-06-04 03:33:20,404 | INFO     | mean y: 2501062.4466019417
[2025-06-04 06:04:00] 2025-06-04 03:33:20,404 | INFO     | -- intersect: 25931816814.131
[2025-06-04 06:04:00] 2025-06-04 03:33:20,404 | INFO     | intersect: 25931816814.131
[2025-06-04 06:04:00] 2025-06-04 03:33:20,404 | INFO     | chi2: 0.9577976431314107
[2025-06-04 06:04:00] 2025-06-04 03:33:20,404 | INFO     | current chi2=0.9577976431314107 (change=1.5667496741112577 %)
[2025-06-04 06:04:00] 2025-06-04 03:33:20,405 | INFO     | left removable region: 20
[2025-06-04 06:04:00] 2025-06-04 03:33:20,405 | INFO     | sum of square deviations: 1963274020.0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,406 | INFO     | sum of deviations: -11193826410.999996
[2025-06-04 06:04:00] 2025-06-04 03:33:20,406 | INFO     | mean x: 1749001628.0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,406 | INFO     | mean y: 2500208.5675675673
[2025-06-04 06:04:00] 2025-06-04 03:33:20,406 | INFO     | -- intersect: 9974628610.89237
[2025-06-04 06:04:00] 2025-06-04 03:33:20,407 | INFO     | intersect: 9974628610.89237
[2025-06-04 06:04:00] 2025-06-04 03:33:20,407 | INFO     | chi2: 0.10836302157086547
[2025-06-04 06:04:00] 2025-06-04 03:33:20,407 | INFO     | -- intersect: 9974628610.89237
[2025-06-04 06:04:00] 2025-06-04 03:33:20,407 | INFO     | current memory leak: -5.70 B/s (using 185 data points, chi2=0.11)
[2025-06-04 06:04:00] 2025-06-04 03:33:20,408 | INFO     | ..............................
[2025-06-04 06:04:00] 2025-06-04 03:33:20,408 | INFO     | . Timing measurements:
[2025-06-04 06:04:00] 2025-06-04 03:33:20,408 | INFO     | . get job = 0 s
[2025-06-04 06:04:00] 2025-06-04 03:33:20,408 | INFO     | . initial setup = 9 s
[2025-06-04 06:04:00] 2025-06-04 03:33:20,408 | INFO     | . payload setup = 82 s
[2025-06-04 06:04:00] 2025-06-04 03:33:20,408 | INFO     | . stage-in = 0 s
[2025-06-04 06:04:00] 2025-06-04 03:33:20,409 | INFO     | . payload execution = 13142 s
[2025-06-04 06:04:00] 2025-06-04 03:33:20,409 | INFO     | . stage-out = 2 s
[2025-06-04 06:04:00] 2025-06-04 03:33:20,409 | INFO     | . log creation = 0 s
[2025-06-04 06:04:00] 2025-06-04 03:33:20,409 | INFO     | ..............................
[2025-06-04 06:04:00] 2025-06-04 03:33:20,789 | INFO     | 
[2025-06-04 06:04:00] 2025-06-04 03:33:20,789 | INFO     | job summary report
[2025-06-04 06:04:00] 2025-06-04 03:33:20,789 | INFO     | --------------------------------------------------
[2025-06-04 06:04:00] 2025-06-04 03:33:20,789 | INFO     | PanDA job id: 6677601260
[2025-06-04 06:04:00] 2025-06-04 03:33:20,789 | INFO     | task id: 45006595
[2025-06-04 06:04:00] 2025-06-04 03:33:20,789 | INFO     | errors: (none)
[2025-06-04 06:04:00] 2025-06-04 03:33:20,789 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 06:04:00] 2025-06-04 03:33:20,789 | INFO     | pilot state: finished 
[2025-06-04 06:04:00] 2025-06-04 03:33:20,789 | INFO     | transexitcode: 0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,790 | INFO     | exeerrorcode: 0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,790 | INFO     | exeerrordiag: 
[2025-06-04 06:04:00] 2025-06-04 03:33:20,790 | INFO     | exitcode: 0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,790 | INFO     | exitmsg: OK
[2025-06-04 06:04:00] 2025-06-04 03:33:20,790 | INFO     | cpuconsumptiontime: 48229 s
[2025-06-04 06:04:00] 2025-06-04 03:33:20,790 | INFO     | nevents: 400
[2025-06-04 06:04:00] 2025-06-04 03:33:20,790 | INFO     | neventsw: 0
[2025-06-04 06:04:00] 2025-06-04 03:33:20,790 | INFO     | pid: 23033
[2025-06-04 06:04:00] 2025-06-04 03:33:20,790 | INFO     | pgrp: 23033
[2025-06-04 06:04:00] 2025-06-04 03:33:20,790 | INFO     | corecount: 8
[2025-06-04 06:04:00] 2025-06-04 03:33:20,790 | INFO     | event service: False
[2025-06-04 06:04:00] 2025-06-04 03:33:20,791 | INFO     | sizes: {0: 2405013, 1: 2405212, 12: 2405212, 23: 2405240, 33: 2405268, 44: 2405324, 55: 2405480, 66: 2405508, 76: 2405536, 86: 2405798, 87: 2405826, 13228: 2435649
[2025-06-04 06:04:00] 2025-06-04 03:33:20,791 | INFO     | --------------------------------------------------
[2025-06-04 06:04:00] 2025-06-04 03:33:20,791 | INFO     | 
[2025-06-04 06:04:00] 2025-06-04 03:33:20,791 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 06:04:00] 2025-06-04 03:33:21,425 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,426 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,426 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,426 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,426 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,426 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,426 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,426 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,426 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,427 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,427 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,427 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,427 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,427 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,427 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 06:04:00] 2025-06-04 03:33:21,427 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,427 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 06:04:00] 2025-06-04 03:33:21,427 | INFO     | job 6677601260 has completed (purged errors)
[2025-06-04 06:04:00] 2025-06-04 03:33:21,428 | INFO     | overall cleanup function is called
[2025-06-04 06:04:00] 2025-06-04 03:33:22,437 | INFO     | --- collectZombieJob: --- 10, [23033]
[2025-06-04 06:04:00] 2025-06-04 03:33:22,437 | INFO     | zombie collector waiting for pid 23033
[2025-06-04 06:04:00] 2025-06-04 03:33:22,437 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 06:04:00] 2025-06-04 03:33:22,437 | INFO     | collected zombie processes
[2025-06-04 06:04:00] 2025-06-04 03:33:22,437 | INFO     | will attempt to kill all subprocesses of pid=23033
[2025-06-04 06:04:00] 2025-06-04 03:33:22,568 | INFO     | process IDs to be killed: [23033] (in reverse order)
[2025-06-04 06:04:00] 2025-06-04 03:33:23,173 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 06:04:00] 2025-06-04 03:33:23,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 06:04:00] 2025-06-04 03:33:23,177 | INFO     | did not find any defunct processes belonging to 23033
[2025-06-04 06:04:00] 2025-06-04 03:33:23,181 | INFO     | did not find any defunct processes belonging to 23033
[2025-06-04 06:04:00] 2025-06-04 03:33:23,181 | INFO     | ready for new job
[2025-06-04 06:04:00] 2025-06-04 03:33:23,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 06:04:00] 2025-06-04 03:33:23,184 | INFO     | **************************************
[2025-06-04 06:04:00] 2025-06-04 03:33:23,184 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 06:04:00] 2025-06-04 03:33:23,184 | INFO     | **************************************
[2025-06-04 06:04:00] 2025-06-04 03:33:23,184 | INFO     | 
[2025-06-04 06:04:00] 2025-06-04 03:33:23,185 | INFO     | pilot is running in a VM
[2025-06-04 06:04:00] 2025-06-04 03:33:23,185 | INFO     | architecture information:
[2025-06-04 06:04:00] 2025-06-04 03:33:23,186 | INFO     | executing command: cat /etc/os-release
[2025-06-04 06:04:00] 2025-06-04 03:33:23,250 | INFO     | cat /etc/os-release:
[2025-06-04 06:04:00] NAME="CentOS Linux"
[2025-06-04 06:04:00] VERSION="7 (Core)"
[2025-06-04 06:04:00] ID="centos"
[2025-06-04 06:04:00] ID_LIKE="rhel fedora"
[2025-06-04 06:04:00] VERSION_ID="7"
[2025-06-04 06:04:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 06:04:00] ANSI_COLOR="0;31"
[2025-06-04 06:04:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 06:04:00] HOME_URL="https://www.centos.org/"
[2025-06-04 06:04:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 06:04:00] 
[2025-06-04 06:04:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 06:04:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 06:04:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 06:04:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 06:04:00] 
[2025-06-04 06:04:00] 2025-06-04 03:33:23,251 | INFO     | **************************************
[2025-06-04 06:04:00] 2025-06-04 03:33:23,754 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 06:04:00] 2025-06-04 03:33:24,015 | INFO     | sufficient remaining disk space (497048092672 B)
[2025-06-04 06:04:00] 2025-06-04 03:33:24,015 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 06:04:00] 2025-06-04 03:33:24,015 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 06:04:00] 2025-06-04 03:33:24,016 | INFO     | update_server=False
[2025-06-04 06:04:00] 2025-06-04 03:33:24,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 06:04:00] 2025-06-04 03:33:24,214 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 06:04:00] 2025-06-04 03:33:24,288 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 06:04:00] 2025-06-04 03:33:24,288 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 06:04:00] 2025-06-04 03:33:24,288 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:04:00] 2025-06-04 03:33:24,288 | INFO     | will abort loop
[2025-06-04 06:04:00] 2025-06-04 03:33:24,452 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 06:04:00] 2025-06-04 03:33:24,452 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 06:04:00] 2025-06-04 03:33:24,452 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 06:04:00] 2025-06-04 03:33:24,569 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 06:04:00] 2025-06-04 03:33:24,729 | INFO     | all job control threads have been joined
[2025-06-04 06:04:00] 2025-06-04 03:33:24,779 | INFO     | all data control threads have been joined
[2025-06-04 06:04:00] 2025-06-04 03:33:25,022 | INFO     | [job] retrieve thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:25,295 | INFO     | [job] job monitor thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:25,410 | INFO     | all payload control threads have been joined
[2025-06-04 06:04:00] 2025-06-04 03:33:25,514 | INFO     | [data] copytool_in thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:25,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:04:00] 2025-06-04 03:33:25,735 | INFO     | [job] control thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:25,781 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:25,785 | INFO     | [data] control thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:25,844 | INFO     | [payload] validate_post thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:25,952 | INFO     | [job] validate thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:25,990 | INFO     | [payload] failed_post thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:26,114 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:26,228 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:26,416 | INFO     | [payload] control thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:26,578 | INFO     | [data] copytool_out thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:26,631 | INFO     | [job] queue monitor thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:28,223 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:31,730 [wrapper] supervise_pilot (15 min periods counter: 16)
[2025-06-04 06:04:00] 2025-06-04 03:33:34,115 | INFO     | job.realtimelogging is not enabled
[2025-06-04 06:04:00] 2025-06-04 03:33:35,121 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 06:04:00] 2025-06-04 03:33:35,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139676926977856)>', '<ExcThread(monitor, started 139676708472576)>']
[2025-06-04 06:04:00] 2025-06-04 03:33:35,518 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 06:04:00] 2025-06-04 03:33:35,518 | INFO     | [monitor] control thread has ended
[2025-06-04 06:04:00] 2025-06-04 03:33:40,253 | INFO     | all workflow threads have been joined
[2025-06-04 06:04:00] 2025-06-04 03:33:40,253 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 06:04:00] 2025-06-04 03:33:40,253 | INFO     | traces error code: 0
[2025-06-04 06:04:00] 2025-06-04 03:33:40,254 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 06:04:00] 2025-06-04 03:33:40,533 [wrapper] ==== pilot stdout END ====
[2025-06-04 06:04:00] 2025-06-04 03:33:40,560 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 06:04:00] 2025-06-04 03:33:40,585 [wrapper] pilotpid: 16386
[2025-06-04 06:04:00] 2025-06-04 03:33:40,610 [wrapper] Pilot exit status: 0
[2025-06-04 06:04:00] 2025-06-04 03:33:41,003 [wrapper] pandaids: 6677601260
[2025-06-04 06:04:00] 2025-06-04 03:33:41,685 [wrapper] cleanup supervisor_pilot  2369 16387
[2025-06-04 06:04:00] 2025-06-04 03:33:41,800 [wrapper] Test setup, not cleaning
[2025-06-04 06:04:00] 2025-06-04 03:33:41,914 [wrapper] apfmon messages muted
[2025-06-04 06:04:00] 2025-06-04 03:33:41,966 [wrapper] ==== wrapper stdout END ====
[2025-06-04 06:04:00] 2025-06-04 03:33:42,071 [wrapper] ==== wrapper stderr END ====
[2025-06-04 06:04:00]  *** Error codes and diagnostics ***
[2025-06-04 06:04:00]     "exeErrorCode": 0,
[2025-06-04 06:04:00]     "exeErrorDiag": "",
[2025-06-04 06:04:00]     "pilotErrorCode": 0,
[2025-06-04 06:04:00]     "pilotErrorDiag": "",
[2025-06-04 06:04:00]  *** Listing of results directory ***
[2025-06-04 06:04:00] total 388528
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc    495897 Jun  3 13:43 pilot3.tar.gz
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc      5111 Jun  3 13:44 queuedata.json
[2025-06-04 06:04:00] -rwx------. 1 boinc boinc     37140 Jun  3 13:45 runpilot2-wrapper.sh
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc       100 Jun  4 01:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 06:04:00] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 01:43 run_atlas
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc       105 Jun  4 01:43 job.xml
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc      6390 Jun  4 01:43 init_data.xml
[2025-06-04 06:04:00] -rw-r--r--. 2 boinc boinc 215761670 Jun  4 01:43 EVNT.45006593._001245.pool.root.1
[2025-06-04 06:04:00] -rw-r--r--. 2 boinc boinc     15093 Jun  4 01:43 start_atlas.sh
[2025-06-04 06:04:00] drwxrwx--x. 2 boinc boinc        68 Jun  4 01:43 shared
[2025-06-04 06:04:00] -rw-r--r--. 2 boinc boinc    508878 Jun  4 01:43 input.tar.gz
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc         0 Jun  4 01:43 boinc_lockfile
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc      2525 Jun  4 01:45 pandaJob.out
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc    986077 Jun  4 01:48 agis_schedconf.cvmfs.json
[2025-06-04 06:04:00] drwx------. 4 boinc boinc      4096 Jun  4 01:48 pilot3
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc 175151645 Jun  4 05:31 HITS.45006595._031056.pool.root.1
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc       531 Jun  4 05:31 boinc_task_state.xml
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc      1019 Jun  4 05:31 memory_monitor_summary.json
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc   1603667 Jun  4 05:31 agis_ddmendpoints.agis.ALL.json
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc    394735 Jun  4 05:32 log.45006595._031056.job.log.tgz.1
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc        95 Jun  4 05:32 pilot_heartbeat.json
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc      7687 Jun  4 05:33 heartbeat.json
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc      4674 Jun  4 05:33 pilotlog.txt
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc   1165005 Jun  4 05:33 log.45006595._031056.job.log.1
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc       357 Jun  4 05:33 output.list
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc       620 Jun  4 05:33 runtime_log
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc   1576960 Jun  4 05:33 result.tar.gz
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc      8659 Jun  4 05:33 runtime_log.err
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc       656 Jun  4 05:33 Ol8KDmFGfg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHrjKDmfWg04m.diag
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc      8192 Jun  4 06:03 boinc_mmap_file
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc        28 Jun  4 06:04 wrapper_checkpoint.txt
[2025-06-04 06:04:00] -rw-r--r--. 1 boinc boinc     20481 Jun  4 06:04 stderr.txt
[2025-06-04 06:04:00] HITS file was successfully produced:
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc 175151645 Jun  4 05:31 shared/HITS.pool.root.1
[2025-06-04 06:04:00]  *** Contents of shared directory: ***
[2025-06-04 06:04:00] total 383812
[2025-06-04 06:04:00] -rw-r--r--. 2 boinc boinc 215761670 Jun  4 01:43 ATLAS.root_0
[2025-06-04 06:04:00] -rw-r--r--. 2 boinc boinc     15093 Jun  4 01:43 start_atlas.sh
[2025-06-04 06:04:00] -rw-r--r--. 2 boinc boinc    508878 Jun  4 01:43 input.tar.gz
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc 175151645 Jun  4 05:31 HITS.pool.root.1
[2025-06-04 06:04:00] -rw-------. 1 boinc boinc   1576960 Jun  4 05:33 result.tar.gz
06:04:02 (12661): run_atlas exited; CPU time 48410.163166
06:04:02 (12661): called boinc_finish(0)

</stderr_txt>
]]>

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