Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
01:55:31 (2037115): wrapper (7.7.26015): starting
01:55:31 (2037115): wrapper: running run_atlas (--nthreads 3)
[2025-06-04 01:55:31] Arguments: --nthreads 3
[2025-06-04 01:55:31] Threads: 3
[2025-06-04 01:55:31] Checking for CVMFS
[2025-06-04 01:55:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 01:55:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 01:55:31] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 01:55:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 01:55:31] 2.9.2.0 1168766 1648 70216 146761 1 56 23098150 36864000 0 130560 0 1257097 99.991 439632 16908 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 01:55:31] CVMFS is ok
[2025-06-04 01:55:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 01:55:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 01:55:31] Further information can be found at the LHC@home message board.
[2025-06-04 01:55:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 01:55:31] Checking for apptainer binary...
[2025-06-04 01:55:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 01:55:31] Running /usr/bin/apptainer --version
[2025-06-04 01:55:31] apptainer version 1.3.6-6.1
[2025-06-04 01:55:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:55:31] atlasA212
[2025-06-04 01:55:31] apptainer works
[2025-06-04 01:55:31] Set ATHENA_PROC_NUMBER=3
[2025-06-04 01:55:31] Set ATHENA_CORE_NUMBER=3
[2025-06-04 01:55:31] Starting ATLAS job with PandaID=6677601197
[2025-06-04 01:55:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:25:26]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:25:26]  is_altstaged=None
[2025-06-04 03:25:26]  is_tar=False
[2025-06-04 03:25:26]  lfn=log.45006595._030993.job.log.tgz.1
[2025-06-04 03:25:26]  mtime=0
[2025-06-04 03:25:26]  protocol_id=None
[2025-06-04 03:25:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 03:25:26]  replicas=None
[2025-06-04 03:25:26]  scope=mc23_13p6TeV
[2025-06-04 03:25:26]  status=None
[2025-06-04 03:25:26]  status_code=0
[2025-06-04 03:25:26]  storage_token=
[2025-06-04 03:25:26]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6677601197/log.45006595._030993.job.log.tgz.1
[2025-06-04 03:25:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/90/log.45006595._030993.job.log.tgz.1
[2025-06-04 03:25:26]  workdir=None
[2025-06-04 03:25:26] ]
[2025-06-04 03:25:26] 2025-06-04 01:24:36,548 | INFO     | transferring file log.45006595._030993.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6677601197/log.45006595._030993.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 03:25:26] 2025-06-04 01:24:36,548 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6677601197/log.45006595._030993.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0309
[2025-06-04 03:25:26] 2025-06-04 01:24:36,565 | INFO     | adding to output.list: log.45006595._030993.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/90/log.45006595._030993.job.log.tg
[2025-06-04 03:25:26] 2025-06-04 01:24:36,565 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 03:25:26] 2025-06-04 01:24:36,565 | INFO     | summary of transferred files:
[2025-06-04 03:25:26] 2025-06-04 01:24:36,565 | INFO     |  -- lfn=log.45006595._030993.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 03:25:26] 2025-06-04 01:24:36,565 | INFO     | stage-out finished correctly
[2025-06-04 03:25:26] 2025-06-04 01:24:36,601 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 03:25:26] 2025-06-04 01:24:37,955 | WARNING  | process 2047345 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 03:25:26] 2025-06-04 01:24:37,956 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6677601197/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:25:26] 2025-06-04 01:24:38,017 | INFO     | number of running child processes to parent process 2047345: 1
[2025-06-04 03:25:26] 2025-06-04 01:24:38,018 | INFO     | maximum number of monitored processes: 6
[2025-06-04 03:25:26] 2025-06-04 01:24:39,255 | INFO     | job 6677601197 has state=finished
[2025-06-04 03:25:26] 2025-06-04 01:24:39,255 | INFO     | preparing for final server update for job 6677601197 in state='finished'
[2025-06-04 03:25:26] 2025-06-04 01:24:39,256 | INFO     | this job has now completed (state=finished)
[2025-06-04 03:25:26] 2025-06-04 01:24:39,256 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 03:25:26] 2025-06-04 01:24:39,256 | INFO     | log transfer has been attempted: DONE
[2025-06-04 03:25:26] 2025-06-04 01:24:39,256 | INFO     | job 6677601197 has finished - writing final server update
[2025-06-04 03:25:26] 2025-06-04 01:24:39,256 | INFO     | total number of processed events: 400 (read)
[2025-06-04 03:25:26] 2025-06-04 01:24:39,257 | INFO     | executing command: lscpu
[2025-06-04 03:25:26] 2025-06-04 01:24:39,274 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 03:25:26] 2025-06-04 01:24:40,520 | INFO     | monitor loop #409: job 0:6677601197 is in state 'finished'
[2025-06-04 03:25:26] 2025-06-04 01:24:40,520 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:25:26] 2025-06-04 01:24:43,023 | INFO     | monitor loop #410: job 0:6677601197 is in state 'finished'
[2025-06-04 03:25:26] 2025-06-04 01:24:43,024 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:25:26] 2025-06-04 01:24:43,536 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 03:25:26] 2025-06-04 01:24:43,536 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6677601197/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:25:26] 2025-06-04 01:24:43,537 | INFO     | extracted standard info from prmon json
[2025-06-04 03:25:26] 2025-06-04 01:24:43,537 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 03:25:26] 2025-06-04 01:24:43,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:25:26] 2025-06-04 01:24:43,537 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:25:26] 2025-06-04 01:24:43,537 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:25:26] 2025-06-04 01:24:43,538 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:25:26] 2025-06-04 01:24:43,538 | INFO     | sum of square deviations: 164765880.0
[2025-06-04 03:25:26] 2025-06-04 01:24:43,538 | INFO     | sum of deviations: -1683450367.0
[2025-06-04 03:25:26] 2025-06-04 01:24:43,538 | INFO     | mean x: 1748997705.0
[2025-06-04 03:25:26] 2025-06-04 01:24:43,538 | INFO     | mean y: 2352821.3333333335
[2025-06-04 03:25:26] 2025-06-04 01:24:43,538 | INFO     | -- intersect: 17872259068.697216
[2025-06-04 03:25:26] 2025-06-04 01:24:43,538 | INFO     | intersect: 17872259068.697216
[2025-06-04 03:25:26] 2025-06-04 01:24:43,538 | INFO     | chi2: 0.004370164686761242
[2025-06-04 03:25:26] 2025-06-04 01:24:43,538 | INFO     | -- intersect: 17872259068.697216
[2025-06-04 03:25:26] 2025-06-04 01:24:43,539 | INFO     | current memory leak: -10.22 B/s (using 81 data points, chi2=0.00)
[2025-06-04 03:25:26] 2025-06-04 01:24:43,539 | INFO     | ..............................
[2025-06-04 03:25:26] 2025-06-04 01:24:43,539 | INFO     | . Timing measurements:
[2025-06-04 03:25:26] 2025-06-04 01:24:43,539 | INFO     | . get job = 0 s
[2025-06-04 03:25:26] 2025-06-04 01:24:43,539 | INFO     | . initial setup = 1 s
[2025-06-04 03:25:26] 2025-06-04 01:24:43,539 | INFO     | . payload setup = 4 s
[2025-06-04 03:25:26] 2025-06-04 01:24:43,539 | INFO     | . stage-in = 0 s
[2025-06-04 03:25:26] 2025-06-04 01:24:43,539 | INFO     | . payload execution = 5315 s
[2025-06-04 03:25:26] 2025-06-04 01:24:43,539 | INFO     | . stage-out = 0 s
[2025-06-04 03:25:26] 2025-06-04 01:24:43,539 | INFO     | . log creation = 0 s
[2025-06-04 03:25:26] 2025-06-04 01:24:43,539 | INFO     | ..............................
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | 
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | job summary report
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | --------------------------------------------------
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | PanDA job id: 6677601197
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | task id: 45006595
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | errors: (none)
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | pilot state: finished 
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | transexitcode: 0
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | exeerrorcode: 0
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | exeerrordiag: 
[2025-06-04 03:25:26] 2025-06-04 01:24:44,054 | INFO     | exitcode: 0
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | exitmsg: OK
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | cpuconsumptiontime: 15270 s
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | nevents: 400
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | neventsw: 0
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | pid: 2047345
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | pgrp: 2047345
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | corecount: 3
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | event service: False
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | sizes: {0: 2405187, 4: 2405393, 11: 2405421, 5323: 2431964, 5324: 2440966, 5331: 2441080}
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | --------------------------------------------------
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | 
[2025-06-04 03:25:26] 2025-06-04 01:24:44,055 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 03:25:26] 2025-06-04 01:24:44,071 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | job 6677601197 has completed (purged errors)
[2025-06-04 03:25:26] 2025-06-04 01:24:44,072 | INFO     | overall cleanup function is called
[2025-06-04 03:25:26] 2025-06-04 01:24:45,078 | INFO     | --- collectZombieJob: --- 10, [2047345]
[2025-06-04 03:25:26] 2025-06-04 01:24:45,078 | INFO     | zombie collector waiting for pid 2047345
[2025-06-04 03:25:26] 2025-06-04 01:24:45,078 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:25:26] 2025-06-04 01:24:45,078 | INFO     | collected zombie processes
[2025-06-04 03:25:26] 2025-06-04 01:24:45,078 | INFO     | will attempt to kill all subprocesses of pid=2047345
[2025-06-04 03:25:26] 2025-06-04 01:24:45,142 | INFO     | process IDs to be killed: [2047345] (in reverse order)
[2025-06-04 03:25:26] 2025-06-04 01:24:45,177 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:25:26] 2025-06-04 01:24:45,177 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:25:26] 2025-06-04 01:24:45,179 | INFO     | did not find any defunct processes belonging to 2047345
[2025-06-04 03:25:26] 2025-06-04 01:24:45,181 | INFO     | did not find any defunct processes belonging to 2047345
[2025-06-04 03:25:26] 2025-06-04 01:24:45,181 | INFO     | ready for new job
[2025-06-04 03:25:26] 2025-06-04 01:24:45,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:25:26] 2025-06-04 01:24:45,182 | INFO     | **************************************
[2025-06-04 03:25:26] 2025-06-04 01:24:45,182 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:25:26] 2025-06-04 01:24:45,182 | INFO     | **************************************
[2025-06-04 03:25:26] 2025-06-04 01:24:45,183 | INFO     | 
[2025-06-04 03:25:26] 2025-06-04 01:24:45,183 | INFO     | architecture information:
[2025-06-04 03:25:26] 2025-06-04 01:24:45,183 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:25:26] 2025-06-04 01:24:45,195 | INFO     | cat /etc/os-release:
[2025-06-04 03:25:26] NAME="CentOS Linux"
[2025-06-04 03:25:26] VERSION="7 (Core)"
[2025-06-04 03:25:26] ID="centos"
[2025-06-04 03:25:26] ID_LIKE="rhel fedora"
[2025-06-04 03:25:26] VERSION_ID="7"
[2025-06-04 03:25:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:25:26] ANSI_COLOR="0;31"
[2025-06-04 03:25:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:25:26] HOME_URL="https://www.centos.org/"
[2025-06-04 03:25:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:25:26] 
[2025-06-04 03:25:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:25:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:25:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:25:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:25:26] 
[2025-06-04 03:25:26] 2025-06-04 01:24:45,195 | INFO     | **************************************
[2025-06-04 03:25:26] 2025-06-04 01:24:45,697 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 03:25:26] 2025-06-04 01:24:45,710 | INFO     | sufficient remaining disk space (377620529152 B)
[2025-06-04 03:25:26] 2025-06-04 01:24:45,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:25:26] 2025-06-04 01:24:45,711 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:25:26] 2025-06-04 01:24:45,711 | INFO     | update_server=False
[2025-06-04 03:25:26] 2025-06-04 01:24:45,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:25:26] 2025-06-04 01:24:45,961 | INFO     | all job control threads have been joined
[2025-06-04 03:25:26] 2025-06-04 01:24:46,471 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:25:26] 2025-06-04 01:24:46,471 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:25:26] 2025-06-04 01:24:46,471 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:25:26] 2025-06-04 01:24:46,490 | INFO     | all payload control threads have been joined
[2025-06-04 03:25:26] 2025-06-04 01:24:46,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:25:26] 2025-06-04 01:24:46,532 | INFO     | aborting loop
[2025-06-04 03:25:26] 2025-06-04 01:24:46,537 | INFO     | all data control threads have been joined
[2025-06-04 03:25:26] 2025-06-04 01:24:46,715 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:46,755 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:46,818 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:46,922 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:46,966 | INFO     | [job] control thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:47,113 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:25:26] 2025-06-04 01:24:47,146 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:25:26] 2025-06-04 01:24:47,146 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:47,495 | INFO     | [payload] control thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:47,537 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:47,542 | INFO     | [data] control thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:47,904 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:48,109 | INFO     | [job] validate thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:48,201 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:48,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:25:26] 2025-06-04 01:24:49,118 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:49,591 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:51,151 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:55,861 | INFO     | job.realtimelogging is not enabled
[2025-06-04 03:25:26] 2025-06-04 01:24:56,866 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:25:26] 2025-06-04 01:24:57,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180702910272)>', '<ExcThread(monitor, started 140180056950528)>']
[2025-06-04 03:25:26] 2025-06-04 01:24:58,531 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:25:26] 2025-06-04 01:24:58,531 | INFO     | [monitor] control thread has ended
[2025-06-04 03:25:26] 2025-06-04 01:25:02,571 | INFO     | all workflow threads have been joined
[2025-06-04 03:25:26] 2025-06-04 01:25:02,571 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:25:26] 2025-06-04 01:25:02,571 | INFO     | traces error code: 0
[2025-06-04 03:25:26] 2025-06-04 01:25:02,571 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:25:26] 2025-06-04 01:25:02,652 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:25:26] 2025-06-04 01:25:02,656 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:25:26] 2025-06-04 01:25:02,659 [wrapper] pilotpid: 2040770
[2025-06-04 03:25:26] 2025-06-04 01:25:02,662 [wrapper] Pilot exit status: 0
[2025-06-04 03:25:26] 2025-06-04 01:25:02,673 [wrapper] pandaids: 6677601197
[2025-06-04 03:25:26] 2025-06-04 01:25:02,697 [wrapper] cleanup supervisor_pilot 2077303 2040771
[2025-06-04 03:25:26] 2025-06-04 01:25:02,700 [wrapper] Test setup, not cleaning
[2025-06-04 03:25:26] 2025-06-04 01:25:02,703 [wrapper] apfmon messages muted
[2025-06-04 03:25:26] 2025-06-04 01:25:02,706 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:25:26] 2025-06-04 01:25:02,710 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:25:26]  *** Error codes and diagnostics ***
[2025-06-04 03:25:26]     "exeErrorCode": 0,
[2025-06-04 03:25:26]     "exeErrorDiag": "",
[2025-06-04 03:25:26]     "pilotErrorCode": 0,
[2025-06-04 03:25:26]     "pilotErrorDiag": "",
[2025-06-04 03:25:26]  *** Listing of results directory ***
[2025-06-04 03:25:26] total 389024
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc    495897 Jun  3 12:57 pilot3.tar.gz
[2025-06-04 03:25:26] -rwx------ 1 boinc boinc     37140 Jun  3 13:41 runpilot2-wrapper.sh
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc      5111 Jun  3 13:41 queuedata.json
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc       100 Jun  4 01:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:25:26] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 01:55 run_atlas
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc       105 Jun  4 01:55 job.xml
[2025-06-04 03:25:26] -rw-r--r-- 2 boinc boinc 215238863 Jun  4 01:55 EVNT.45006593._001243.pool.root.1
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc      6931 Jun  4 01:55 init_data.xml
[2025-06-04 03:25:26] drwxrwx--x 2 boinc boinc      4096 Jun  4 01:55 shared
[2025-06-04 03:25:26] -rw-r--r-- 2 boinc boinc    508873 Jun  4 01:55 input.tar.gz
[2025-06-04 03:25:26] -rw-r--r-- 2 boinc boinc     15093 Jun  4 01:55 start_atlas.sh
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc         0 Jun  4 01:55 boinc_lockfile
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc      2525 Jun  4 01:55 pandaJob.out
[2025-06-04 03:25:26] -rw------- 1 boinc boinc    986077 Jun  4 01:55 agis_schedconf.cvmfs.json
[2025-06-04 03:25:26] -rw------- 1 boinc boinc   1603667 Jun  4 01:55 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:25:26] drwx------ 4 boinc boinc      4096 Jun  4 01:55 pilot3
[2025-06-04 03:25:26] -rw------- 1 boinc boinc        95 Jun  4 03:24 pilot_heartbeat.json
[2025-06-04 03:25:26] -rw------- 1 boinc boinc 177789575 Jun  4 03:24 HITS.45006595._030993.pool.root.1
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc       529 Jun  4 03:24 boinc_task_state.xml
[2025-06-04 03:25:26] -rw------- 1 boinc boinc      1039 Jun  4 03:24 memory_monitor_summary.json
[2025-06-04 03:25:26] -rw------- 1 boinc boinc    231054 Jun  4 03:24 log.45006595._030993.job.log.tgz.1
[2025-06-04 03:25:26] -rw------- 1 boinc boinc      7689 Jun  4 03:24 heartbeat.json
[2025-06-04 03:25:26] -rw------- 1 boinc boinc      4429 Jun  4 03:25 pilotlog.txt
[2025-06-04 03:25:26] -rw------- 1 boinc boinc    513742 Jun  4 03:25 log.45006595._030993.job.log.1
[2025-06-04 03:25:26] -rw------- 1 boinc boinc       357 Jun  4 03:25 output.list
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc       620 Jun  4 03:25 runtime_log
[2025-06-04 03:25:26] -rw------- 1 boinc boinc    768000 Jun  4 03:25 result.tar.gz
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc      8748 Jun  4 03:25 runtime_log.err
[2025-06-04 03:25:26] -rw------- 1 boinc boinc       667 Jun  4 03:25 RkmMDmVCfg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFqjKDmPJnrRo.diag
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc      8192 Jun  4 03:25 boinc_mmap_file
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc        27 Jun  4 03:25 wrapper_checkpoint.txt
[2025-06-04 03:25:26] -rw-r--r-- 1 boinc boinc     21379 Jun  4 03:25 stderr.txt
[2025-06-04 03:25:26] HITS file was successfully produced:
[2025-06-04 03:25:26] -rw------- 1 boinc boinc 177789575 Jun  4 03:24 shared/HITS.pool.root.1
[2025-06-04 03:25:26]  *** Contents of shared directory: ***
[2025-06-04 03:25:26] total 385096
[2025-06-04 03:25:26] -rw-r--r-- 2 boinc boinc 215238863 Jun  4 01:55 ATLAS.root_0
[2025-06-04 03:25:26] -rw-r--r-- 2 boinc boinc    508873 Jun  4 01:55 input.tar.gz
[2025-06-04 03:25:26] -rw-r--r-- 2 boinc boinc     15093 Jun  4 01:55 start_atlas.sh
[2025-06-04 03:25:26] -rw------- 1 boinc boinc 177789575 Jun  4 03:24 HITS.pool.root.1
[2025-06-04 03:25:26] -rw------- 1 boinc boinc    768000 Jun  4 03:25 result.tar.gz
03:25:28 (2037115): run_atlas exited; CPU time 15283.509684
03:25:28 (2037115): called boinc_finish(0)

</stderr_txt>
]]>

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