Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:25:06 (813964): wrapper (7.7.26015): starting
14:25:06 (813964): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 14:25:06] Arguments: --nthreads 4
[2025-06-05 14:25:06] Threads: 4
[2025-06-05 14:25:06] Checking for CVMFS
[2025-06-05 14:25:06] No cvmfs_config command found, will try listing directly
[2025-06-05 14:25:06] CVMFS is ok
[2025-06-05 14:25:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 14:25:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 14:25:06] Further information can be found at the LHC@home message board.
[2025-06-05 14:25:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 14:25:06] Checking for apptainer binary...
[2025-06-05 14:25:06] which: no apptainer in ((null))
[2025-06-05 14:25:06] apptainer is not installed, using version from CVMFS
[2025-06-05 14:25:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 14:25:06] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut31.grid.cesnet.cz
[2025-06-05 14:25:06] apptainer works
[2025-06-05 14:25:06] Set ATHENA_PROC_NUMBER=4
[2025-06-05 14:25:06] Set ATHENA_CORE_NUMBER=4
[2025-06-05 14:25:06] Starting ATLAS job with PandaID=6677599748
[2025-06-05 14:25:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 17:20:01]  *** The last 200 lines of the pilot log: ***
[2025-06-05 17:20:01] 2025-06-05 15:19:09,699 | INFO     | executing command: lscpu
[2025-06-05 17:20:01] 2025-06-05 15:19:09,733 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 17:20:01] 2025-06-05 15:19:10,815 | WARNING  | process 824307 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 17:20:01] 2025-06-05 15:19:10,816 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677599748/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 17:20:01] 2025-06-05 15:19:11,094 | INFO     | number of running child processes to parent process 824307: 1
[2025-06-05 17:20:01] 2025-06-05 15:19:11,095 | INFO     | maximum number of monitored processes: 6
[2025-06-05 17:20:01] 2025-06-05 15:19:13,598 | INFO     | monitor loop #763: job 0:6677599748 is in state 'finished'
[2025-06-05 17:20:01] 2025-06-05 15:19:13,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 17:20:01] 2025-06-05 15:19:15,187 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 17:20:01] 2025-06-05 15:19:15,188 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6677599748/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 17:20:01] 2025-06-05 15:19:15,188 | INFO     | extracted standard info from prmon json
[2025-06-05 17:20:01] 2025-06-05 15:19:15,188 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 17:20:01] 2025-06-05 15:19:15,189 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 17:20:01] 2025-06-05 15:19:15,189 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 17:20:01] 2025-06-05 15:19:15,189 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 17:20:01] 2025-06-05 15:19:15,193 | INFO     | fitting pss+swap vs Time
[2025-06-05 17:20:01] 2025-06-05 15:19:15,193 | INFO     | sum of square deviations: 1550429070.0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,194 | INFO     | sum of deviations: -17308830337.000004
[2025-06-05 17:20:01] 2025-06-05 15:19:15,195 | INFO     | mean x: 1749131527.0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,195 | INFO     | mean y: 2379033.7953216373
[2025-06-05 17:20:01] 2025-06-05 15:19:15,195 | INFO     | -- intersect: 19529503120.768703
[2025-06-05 17:20:01] 2025-06-05 15:19:15,195 | INFO     | intersect: 19529503120.768703
[2025-06-05 17:20:01] 2025-06-05 15:19:15,195 | INFO     | chi2: 1.805084970443422
[2025-06-05 17:20:01] 2025-06-05 15:19:15,196 | INFO     | sum of square deviations: 1418361477.5
[2025-06-05 17:20:01] 2025-06-05 15:19:15,197 | INFO     | sum of deviations: -16381839353.499996
[2025-06-05 17:20:01] 2025-06-05 15:19:15,197 | INFO     | mean x: 1749131374.5
[2025-06-05 17:20:01] 2025-06-05 15:19:15,197 | INFO     | mean y: 2380104.5240963856
[2025-06-05 17:20:01] 2025-06-05 15:19:15,197 | INFO     | -- intersect: 20204556799.093582
[2025-06-05 17:20:01] 2025-06-05 15:19:15,197 | INFO     | intersect: 20204556799.093582
[2025-06-05 17:20:01] 2025-06-05 15:19:15,198 | INFO     | chi2: 1.8028330427507984
[2025-06-05 17:20:01] 2025-06-05 15:19:15,198 | INFO     | current chi2=1.8028330427507984 (change=0.12475466415691348 %)
[2025-06-05 17:20:01] 2025-06-05 15:19:15,198 | INFO     | right removable region: 165
[2025-06-05 17:20:01] 2025-06-05 15:19:15,198 | INFO     | sum of square deviations: 1418361477.5
[2025-06-05 17:20:01] 2025-06-05 15:19:15,199 | INFO     | sum of deviations: -43388222465.5
[2025-06-05 17:20:01] 2025-06-05 15:19:15,200 | INFO     | mean x: 1749131679.5
[2025-06-05 17:20:01] 2025-06-05 15:19:15,200 | INFO     | mean y: 2408770.3674698793
[2025-06-05 17:20:01] 2025-06-05 15:19:15,200 | INFO     | -- intersect: 53509018781.63637
[2025-06-05 17:20:01] 2025-06-05 15:19:15,200 | INFO     | intersect: 53509018781.63637
[2025-06-05 17:20:01] 2025-06-05 15:19:15,200 | INFO     | chi2: 0.21130105613016628
[2025-06-05 17:20:01] 2025-06-05 15:19:15,200 | INFO     | current chi2=0.21130105613016628 (change=88.29412135217879 %)
[2025-06-05 17:20:01] 2025-06-05 15:19:15,201 | INFO     | sum of square deviations: 1294014960.0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,202 | INFO     | sum of deviations: -38421671792.0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,202 | INFO     | mean x: 1749131832.0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,202 | INFO     | mean y: 2402644.633540373
[2025-06-05 17:20:01] 2025-06-05 15:19:15,202 | INFO     | -- intersect: 51937327083.25339
[2025-06-05 17:20:01] 2025-06-05 15:19:15,202 | INFO     | intersect: 51937327083.25339
[2025-06-05 17:20:01] 2025-06-05 15:19:15,203 | INFO     | chi2: 0.20533755403994153
[2025-06-05 17:20:01] 2025-06-05 15:19:15,203 | INFO     | current chi2=0.20533755403994153 (change=2.822277464884558 %)
[2025-06-05 17:20:01] 2025-06-05 15:19:15,203 | INFO     | left removable region: 20
[2025-06-05 17:20:01] 2025-06-05 15:19:15,203 | INFO     | sum of square deviations: 945282840.0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,204 | INFO     | sum of deviations: -23330372381.0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,204 | INFO     | mean x: 1749131954.0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,204 | INFO     | mean y: 2385368.0689655175
[2025-06-05 17:20:01] 2025-06-05 15:19:15,204 | INFO     | -- intersect: 43172427289.41196
[2025-06-05 17:20:01] 2025-06-05 15:19:15,205 | INFO     | intersect: 43172427289.41196
[2025-06-05 17:20:01] 2025-06-05 15:19:15,205 | INFO     | chi2: 0.15543463621291642
[2025-06-05 17:20:01] 2025-06-05 15:19:15,205 | INFO     | -- intersect: 43172427289.41196
[2025-06-05 17:20:01] 2025-06-05 15:19:15,205 | INFO     | current memory leak: -24.68 B/s (using 145 data points, chi2=0.16)
[2025-06-05 17:20:01] 2025-06-05 15:19:15,206 | INFO     | ..............................
[2025-06-05 17:20:01] 2025-06-05 15:19:15,206 | INFO     | . Timing measurements:
[2025-06-05 17:20:01] 2025-06-05 15:19:15,206 | INFO     | . get job = 0 s
[2025-06-05 17:20:01] 2025-06-05 15:19:15,206 | INFO     | . initial setup = 1 s
[2025-06-05 17:20:01] 2025-06-05 15:19:15,206 | INFO     | . payload setup = 6 s
[2025-06-05 17:20:01] 2025-06-05 15:19:15,206 | INFO     | . stage-in = 0 s
[2025-06-05 17:20:01] 2025-06-05 15:19:15,206 | INFO     | . payload execution = 10405 s
[2025-06-05 17:20:01] 2025-06-05 15:19:15,207 | INFO     | . stage-out = 0 s
[2025-06-05 17:20:01] 2025-06-05 15:19:15,207 | INFO     | . log creation = 0 s
[2025-06-05 17:20:01] 2025-06-05 15:19:15,207 | INFO     | ..............................
[2025-06-05 17:20:01] 2025-06-05 15:19:15,313 | INFO     | 
[2025-06-05 17:20:01] 2025-06-05 15:19:15,314 | INFO     | job summary report
[2025-06-05 17:20:01] 2025-06-05 15:19:15,314 | INFO     | --------------------------------------------------
[2025-06-05 17:20:01] 2025-06-05 15:19:15,314 | INFO     | PanDA job id: 6677599748
[2025-06-05 17:20:01] 2025-06-05 15:19:15,314 | INFO     | task id: 45006595
[2025-06-05 17:20:01] 2025-06-05 15:19:15,314 | INFO     | errors: (none)
[2025-06-05 17:20:01] 2025-06-05 15:19:15,314 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 17:20:01] 2025-06-05 15:19:15,314 | INFO     | pilot state: finished 
[2025-06-05 17:20:01] 2025-06-05 15:19:15,314 | INFO     | transexitcode: 0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,314 | INFO     | exeerrorcode: 0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,315 | INFO     | exeerrordiag: 
[2025-06-05 17:20:01] 2025-06-05 15:19:15,315 | INFO     | exitcode: 0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,315 | INFO     | exitmsg: OK
[2025-06-05 17:20:01] 2025-06-05 15:19:15,315 | INFO     | cpuconsumptiontime: 39614 s
[2025-06-05 17:20:01] 2025-06-05 15:19:15,315 | INFO     | nevents: 400
[2025-06-05 17:20:01] 2025-06-05 15:19:15,315 | INFO     | neventsw: 0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,315 | INFO     | pid: 824307
[2025-06-05 17:20:01] 2025-06-05 15:19:15,315 | INFO     | pgrp: 824307
[2025-06-05 17:20:01] 2025-06-05 15:19:15,315 | INFO     | corecount: 4
[2025-06-05 17:20:01] 2025-06-05 15:19:15,315 | INFO     | event service: False
[2025-06-05 17:20:01] 2025-06-05 15:19:15,316 | INFO     | sizes: {0: 2397350, 4: 2397556, 11: 2397584, 10415: 2426182, 10416: 2435200, 10417: 2435200, 10424: 2435498}
[2025-06-05 17:20:01] 2025-06-05 15:19:15,316 | INFO     | --------------------------------------------------
[2025-06-05 17:20:01] 2025-06-05 15:19:15,316 | INFO     | 
[2025-06-05 17:20:01] 2025-06-05 15:19:15,316 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-06-05 17:20:01] 2025-06-05 15:19:15,334 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,334 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,334 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,334 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,335 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,335 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,335 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,335 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,335 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,335 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,335 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,335 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,335 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,336 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,336 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,336 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,336 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,336 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 17:20:01] 2025-06-05 15:19:15,336 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,336 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 17:20:01] 2025-06-05 15:19:15,337 | INFO     | job 6677599748 has completed (purged errors)
[2025-06-05 17:20:01] 2025-06-05 15:19:15,337 | INFO     | overall cleanup function is called
[2025-06-05 17:20:01] 2025-06-05 15:19:16,344 | INFO     | --- collectZombieJob: --- 10, [824307]
[2025-06-05 17:20:01] 2025-06-05 15:19:16,344 | INFO     | zombie collector waiting for pid 824307
[2025-06-05 17:20:01] 2025-06-05 15:19:16,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 17:20:01] 2025-06-05 15:19:16,344 | INFO     | collected zombie processes
[2025-06-05 17:20:01] 2025-06-05 15:19:16,344 | INFO     | will attempt to kill all subprocesses of pid=824307
[2025-06-05 17:20:01] 2025-06-05 15:19:16,614 | INFO     | process IDs to be killed: [824307] (in reverse order)
[2025-06-05 17:20:01] 2025-06-05 15:19:16,684 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 17:20:01] 2025-06-05 15:19:16,685 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 17:20:01] 2025-06-05 15:19:16,692 | INFO     | did not find any defunct processes belonging to 824307
[2025-06-05 17:20:01] 2025-06-05 15:19:16,700 | INFO     | did not find any defunct processes belonging to 824307
[2025-06-05 17:20:01] 2025-06-05 15:19:16,700 | INFO     | ready for new job
[2025-06-05 17:20:01] 2025-06-05 15:19:16,700 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 17:20:01] 2025-06-05 15:19:16,702 | INFO     | **************************************
[2025-06-05 17:20:01] 2025-06-05 15:19:16,702 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 17:20:01] 2025-06-05 15:19:16,702 | INFO     | **************************************
[2025-06-05 17:20:01] 2025-06-05 15:19:16,702 | INFO     | 
[2025-06-05 17:20:01] 2025-06-05 15:19:16,703 | INFO     | architecture information:
[2025-06-05 17:20:01] 2025-06-05 15:19:16,704 | INFO     | executing command: cat /etc/os-release
[2025-06-05 17:20:01] 2025-06-05 15:19:16,713 | INFO     | cat /etc/os-release:
[2025-06-05 17:20:01] NAME="CentOS Linux"
[2025-06-05 17:20:01] VERSION="7 (Core)"
[2025-06-05 17:20:01] ID="centos"
[2025-06-05 17:20:01] ID_LIKE="rhel fedora"
[2025-06-05 17:20:01] VERSION_ID="7"
[2025-06-05 17:20:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 17:20:01] ANSI_COLOR="0;31"
[2025-06-05 17:20:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 17:20:01] HOME_URL="https://www.centos.org/"
[2025-06-05 17:20:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 17:20:01] 
[2025-06-05 17:20:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 17:20:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 17:20:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 17:20:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 17:20:01] 
[2025-06-05 17:20:01] 2025-06-05 15:19:16,713 | INFO     | **************************************
[2025-06-05 17:20:01] 2025-06-05 15:19:17,216 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-06-05 17:20:01] 2025-06-05 15:19:17,229 | INFO     | sufficient remaining disk space (1660999958528 B)
[2025-06-05 17:20:01] 2025-06-05 15:19:17,230 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 17:20:01] 2025-06-05 15:19:17,231 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 17:20:01] 2025-06-05 15:19:17,231 | INFO     | update_server=False
[2025-06-05 17:20:01] 2025-06-05 15:19:17,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 17:20:01] 2025-06-05 15:19:17,231 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:20:01] 2025-06-05 15:19:17,231 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:20:01] 2025-06-05 15:19:17,232 | INFO     | aborting loop
[2025-06-05 17:20:01] 2025-06-05 15:19:17,398 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 17:20:01] 2025-06-05 15:19:17,399 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 17:20:01] 2025-06-05 15:19:17,399 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 17:20:01] 2025-06-05 15:19:17,577 | INFO     | all data control threads have been joined
[2025-06-05 17:20:01] 2025-06-05 15:19:17,667 | INFO     | all job control threads have been joined
[2025-06-05 17:20:01] 2025-06-05 15:19:17,979 | INFO     | all payload control threads have been joined
[2025-06-05 17:20:01] 2025-06-05 15:19:18,051 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 17:20:01] 2025-06-05 15:19:18,236 | INFO     | [job] retrieve thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:18,237 | INFO     | [job] queue monitor thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:18,237 | INFO     | [job] job monitor thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:18,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 17:20:01] 2025-06-05 15:19:18,582 | INFO     | [data] control thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:18,622 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:18,671 | INFO     | [job] control thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:18,808 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:18,849 | INFO     | [payload] validate_post thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:18,984 | INFO     | [payload] control thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:19,049 | INFO     | [data] copytool_in thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:19,105 | INFO     | [job] validate thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:19,296 | INFO     | [payload] failed_post thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:19,459 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:19,560 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:20,057 | INFO     | [data] copytool_out thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:22,421 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 17:20:01] 2025-06-05 15:19:23,609 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23227345323840)>', '<ExcThread(monitor, started 23227034208000)>']
[2025-06-05 17:20:01] 2025-06-05 15:19:24,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 17:20:01] 2025-06-05 15:19:24,434 | INFO     | [monitor] control thread has ended
[2025-06-05 17:20:01] 2025-06-05 15:19:28,626 | INFO     | all workflow threads have been joined
[2025-06-05 17:20:01] 2025-06-05 15:19:28,626 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 17:20:01] 2025-06-05 15:19:28,627 | INFO     | traces error code: 0
[2025-06-05 17:20:01] 2025-06-05 15:19:28,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 17:20:01] 2025-06-05 15:19:28,745 [wrapper] ==== pilot stdout END ====
[2025-06-05 17:20:01] 2025-06-05 15:19:28,747 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 17:20:01] 2025-06-05 15:19:28,750 [wrapper] pilotpid: 817546
[2025-06-05 17:20:01] 2025-06-05 15:19:28,752 [wrapper] Pilot exit status: 0
[2025-06-05 17:20:01] 2025-06-05 15:19:28,761 [wrapper] pandaids: 6677599748
[2025-06-05 17:20:01] 2025-06-05 15:19:28,808 [wrapper] cleanup supervisor_pilot  999099 817547
[2025-06-05 17:20:01] 2025-06-05 15:19:28,810 [wrapper] Test setup, not cleaning
[2025-06-05 17:20:01] 2025-06-05 15:19:28,813 [wrapper] apfmon messages muted
[2025-06-05 17:20:01] 2025-06-05 15:19:28,816 [wrapper] ==== wrapper stdout END ====
[2025-06-05 17:20:01] 2025-06-05 15:19:28,818 [wrapper] ==== wrapper stderr END ====
[2025-06-05 17:20:01]  *** Error codes and diagnostics ***
[2025-06-05 17:20:01]     "exeErrorCode": 0,
[2025-06-05 17:20:01]     "exeErrorDiag": "",
[2025-06-05 17:20:01]     "pilotErrorCode": 0,
[2025-06-05 17:20:01]     "pilotErrorDiag": "",
[2025-06-05 17:20:01]  *** Listing of results directory ***
[2025-06-05 17:20:01] total 386028
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc    495897 Jun  3 12:57 pilot3.tar.gz
[2025-06-05 17:20:01] -rwx------ 1 boinc boinc     37140 Jun  3 13:34 runpilot2-wrapper.sh
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc      5111 Jun  3 13:34 queuedata.json
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc       100 Jun  5 14:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 17:20:01] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 14:25 run_atlas
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc       105 Jun  5 14:25 job.xml
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc      6419 Jun  5 14:25 init_data.xml
[2025-06-05 17:20:01] -rw-r--r-- 2 boinc boinc 214756667 Jun  5 14:25 EVNT.45006593._001236.pool.root.1
[2025-06-05 17:20:01] -rw-r--r-- 2 boinc boinc     15093 Jun  5 14:25 start_atlas.sh
[2025-06-05 17:20:01] drwxrwx--x 2 boinc boinc      4096 Jun  5 14:25 shared
[2025-06-05 17:20:01] -rw-r--r-- 2 boinc boinc    508875 Jun  5 14:25 input.tar.gz
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc         0 Jun  5 14:25 boinc_lockfile
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc      2523 Jun  5 14:25 pandaJob.out
[2025-06-05 17:20:01] -rw------- 1 boinc boinc    983210 Jun  5 14:25 agis_schedconf.cvmfs.json
[2025-06-05 17:20:01] -rw------- 1 boinc boinc   1598969 Jun  5 14:25 agis_ddmendpoints.agis.ALL.json
[2025-06-05 17:20:01] drwx------ 4 boinc boinc      4096 Jun  5 14:25 pilot3
[2025-06-05 17:20:01] -rw------- 1 boinc boinc 174165800 Jun  5 17:18 HITS.45006595._030834.pool.root.1
[2025-06-05 17:20:01] -rw------- 1 boinc boinc        95 Jun  5 17:18 pilot_heartbeat.json
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc       528 Jun  5 17:18 boinc_task_state.xml
[2025-06-05 17:20:01] -rw------- 1 boinc boinc      1034 Jun  5 17:19 memory_monitor_summary.json
[2025-06-05 17:20:01] -rw------- 1 boinc boinc    287388 Jun  5 17:19 log.45006595._030834.job.log.tgz.1
[2025-06-05 17:20:01] -rw------- 1 boinc boinc      7732 Jun  5 17:19 heartbeat.json
[2025-06-05 17:20:01] -rw------- 1 boinc boinc      4364 Jun  5 17:19 pilotlog.txt
[2025-06-05 17:20:01] -rw------- 1 boinc boinc    980468 Jun  5 17:19 log.45006595._030834.job.log.1
[2025-06-05 17:20:01] -rw------- 1 boinc boinc       357 Jun  5 17:19 output.list
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc       620 Jun  5 17:19 runtime_log
[2025-06-05 17:20:01] -rw------- 1 boinc boinc   1290240 Jun  5 17:19 result.tar.gz
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc      9026 Jun  5 17:19 runtime_log.err
[2025-06-05 17:20:01] -rw------- 1 boinc boinc       665 Jun  5 17:19 GoGMDmK5eg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmkTYKDm10IUJm.diag
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc        26 Jun  5 17:19 wrapper_checkpoint.txt
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc      8192 Jun  5 17:20 boinc_mmap_file
[2025-06-05 17:20:01] -rw-r--r-- 1 boinc boinc     20932 Jun  5 17:20 stderr.txt
[2025-06-05 17:20:01] HITS file was successfully produced:
[2025-06-05 17:20:01] -rw------- 1 boinc boinc 174165800 Jun  5 17:18 shared/HITS.pool.root.1
[2025-06-05 17:20:01]  *** Contents of shared directory: ***
[2025-06-05 17:20:01] total 381592
[2025-06-05 17:20:01] -rw-r--r-- 2 boinc boinc 214756667 Jun  5 14:25 ATLAS.root_0
[2025-06-05 17:20:01] -rw-r--r-- 2 boinc boinc     15093 Jun  5 14:25 start_atlas.sh
[2025-06-05 17:20:01] -rw-r--r-- 2 boinc boinc    508875 Jun  5 14:25 input.tar.gz
[2025-06-05 17:20:01] -rw------- 1 boinc boinc 174165800 Jun  5 17:18 HITS.pool.root.1
[2025-06-05 17:20:01] -rw------- 1 boinc boinc   1290240 Jun  5 17:19 result.tar.gz
17:20:03 (813964): run_atlas exited; CPU time 39983.865785
17:20:03 (813964): called boinc_finish(0)

</stderr_txt>
]]>

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