Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:18:17 (3848235): wrapper (7.7.26015): starting
14:18:17 (3848235): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 14:18:17] Arguments: --nthreads 4
[2025-06-05 14:18:17] Threads: 4
[2025-06-05 14:18:17] Checking for CVMFS
[2025-06-05 14:18:17] No cvmfs_config command found, will try listing directly
[2025-06-05 14:18:17] CVMFS is ok
[2025-06-05 14:18:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 14:18:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 14:18:17] Further information can be found at the LHC@home message board.
[2025-06-05 14:18:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 14:18:17] Checking for apptainer binary...
[2025-06-05 14:18:17] which: no apptainer in ((null))
[2025-06-05 14:18:17] apptainer is not installed, using version from CVMFS
[2025-06-05 14:18:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 14:18:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment ugluk10.grid.cesnet.cz
[2025-06-05 14:18:17] apptainer works
[2025-06-05 14:18:17] Set ATHENA_PROC_NUMBER=4
[2025-06-05 14:18:17] Set ATHENA_CORE_NUMBER=4
[2025-06-05 14:18:17] Starting ATLAS job with PandaID=6677599654
[2025-06-05 14:18:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 17:20:07]  *** The last 200 lines of the pilot log: ***
[2025-06-05 17:20:07] 2025-06-05 15:18:23,124 | INFO     | number of running child processes to parent process 3858501: 1
[2025-06-05 17:20:07] 2025-06-05 15:18:23,124 | INFO     | maximum number of monitored processes: 6
[2025-06-05 17:20:07] 2025-06-05 15:18:23,210 [wrapper] supervise_pilot (15 min periods counter: 13)
[2025-06-05 17:20:07] 2025-06-05 15:18:25,627 | INFO     | monitor loop #801: job 0:6677599654 is in state 'finished'
[2025-06-05 17:20:07] 2025-06-05 15:18:25,628 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 17:20:07] 2025-06-05 15:18:27,227 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 17:20:07] 2025-06-05 15:18:27,228 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6677599654/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 17:20:07] 2025-06-05 15:18:27,228 | INFO     | extracted standard info from prmon json
[2025-06-05 17:20:07] 2025-06-05 15:18:27,228 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 17:20:07] 2025-06-05 15:18:27,229 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 17:20:07] 2025-06-05 15:18:27,229 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 17:20:07] 2025-06-05 15:18:27,229 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 17:20:07] 2025-06-05 15:18:27,233 | INFO     | fitting pss+swap vs Time
[2025-06-05 17:20:07] 2025-06-05 15:18:27,233 | INFO     | sum of square deviations: 1719429448.0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,234 | INFO     | sum of deviations: -20792798001.0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,235 | INFO     | mean x: 1749131299.0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,235 | INFO     | mean y: 2386695.638418079
[2025-06-05 17:20:07] 2025-06-05 15:18:27,235 | INFO     | -- intersect: 21154364649.510086
[2025-06-05 17:20:07] 2025-06-05 15:18:27,235 | INFO     | intersect: 21154364649.510086
[2025-06-05 17:20:07] 2025-06-05 15:18:27,235 | INFO     | chi2: 1.7031559012106792
[2025-06-05 17:20:07] 2025-06-05 15:18:27,236 | INFO     | sum of square deviations: 1577789583.0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,237 | INFO     | sum of deviations: -20000785408.000004
[2025-06-05 17:20:07] 2025-06-05 15:18:27,237 | INFO     | mean x: 1749131146.5
[2025-06-05 17:20:07] 2025-06-05 15:18:27,237 | INFO     | mean y: 2387556.1627906975
[2025-06-05 17:20:07] 2025-06-05 15:18:27,237 | INFO     | -- intersect: 22175177317.56884
[2025-06-05 17:20:07] 2025-06-05 15:18:27,238 | INFO     | intersect: 22175177317.56884
[2025-06-05 17:20:07] 2025-06-05 15:18:27,238 | INFO     | chi2: 1.6987913340229168
[2025-06-05 17:20:07] 2025-06-05 15:18:27,238 | INFO     | current chi2=1.6987913340229168 (change=0.25626351555132554 %)
[2025-06-05 17:20:07] 2025-06-05 15:18:27,238 | INFO     | right removable region: 171
[2025-06-05 17:20:07] 2025-06-05 15:18:27,239 | INFO     | sum of square deviations: 1577789583.0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,240 | INFO     | sum of deviations: -46188566606.49999
[2025-06-05 17:20:07] 2025-06-05 15:18:27,240 | INFO     | mean x: 1749131451.5
[2025-06-05 17:20:07] 2025-06-05 15:18:27,240 | INFO     | mean y: 2413667.5406976743
[2025-06-05 17:20:07] 2025-06-05 15:18:27,240 | INFO     | -- intersect: 51206880613.96226
[2025-06-05 17:20:07] 2025-06-05 15:18:27,240 | INFO     | intersect: 51206880613.96226
[2025-06-05 17:20:07] 2025-06-05 15:18:27,241 | INFO     | chi2: 0.1759017651511251
[2025-06-05 17:20:07] 2025-06-05 15:18:27,241 | INFO     | current chi2=0.1759017651511251 (change=89.67201035289332 %)
[2025-06-05 17:20:07] 2025-06-05 15:18:27,241 | INFO     | sum of square deviations: 1444149868.0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,242 | INFO     | sum of deviations: -39971812149.00001
[2025-06-05 17:20:07] 2025-06-05 15:18:27,242 | INFO     | mean x: 1749131604.0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,243 | INFO     | mean y: 2406542.209580838
[2025-06-05 17:20:07] 2025-06-05 15:18:27,243 | INFO     | -- intersect: 48415636670.32193
[2025-06-05 17:20:07] 2025-06-05 15:18:27,243 | INFO     | intersect: 48415636670.32193
[2025-06-05 17:20:07] 2025-06-05 15:18:27,243 | INFO     | chi2: 0.16531697074133223
[2025-06-05 17:20:07] 2025-06-05 15:18:27,243 | INFO     | current chi2=0.16531697074133223 (change=6.017446385884191 %)
[2025-06-05 17:20:07] 2025-06-05 15:18:27,243 | INFO     | left removable region: 20
[2025-06-05 17:20:07] 2025-06-05 15:18:27,244 | INFO     | sum of square deviations: 1067554900.0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,245 | INFO     | sum of deviations: -23135151641.000008
[2025-06-05 17:20:07] 2025-06-05 15:18:27,245 | INFO     | mean x: 1749131726.0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,245 | INFO     | mean y: 2387877.5298013245
[2025-06-05 17:20:07] 2025-06-05 15:18:27,245 | INFO     | -- intersect: 37908099069.61376
[2025-06-05 17:20:07] 2025-06-05 15:18:27,245 | INFO     | intersect: 37908099069.61376
[2025-06-05 17:20:07] 2025-06-05 15:18:27,246 | INFO     | chi2: 0.09266881826632471
[2025-06-05 17:20:07] 2025-06-05 15:18:27,246 | INFO     | -- intersect: 37908099069.61376
[2025-06-05 17:20:07] 2025-06-05 15:18:27,246 | INFO     | current memory leak: -21.67 B/s (using 151 data points, chi2=0.09)
[2025-06-05 17:20:07] 2025-06-05 15:18:27,246 | INFO     | ..............................
[2025-06-05 17:20:07] 2025-06-05 15:18:27,247 | INFO     | . Timing measurements:
[2025-06-05 17:20:07] 2025-06-05 15:18:27,247 | INFO     | . get job = 0 s
[2025-06-05 17:20:07] 2025-06-05 15:18:27,247 | INFO     | . initial setup = 1 s
[2025-06-05 17:20:07] 2025-06-05 15:18:27,247 | INFO     | . payload setup = 6 s
[2025-06-05 17:20:07] 2025-06-05 15:18:27,247 | INFO     | . stage-in = 0 s
[2025-06-05 17:20:07] 2025-06-05 15:18:27,247 | INFO     | . payload execution = 10771 s
[2025-06-05 17:20:07] 2025-06-05 15:18:27,247 | INFO     | . stage-out = 0 s
[2025-06-05 17:20:07] 2025-06-05 15:18:27,247 | INFO     | . log creation = 0 s
[2025-06-05 17:20:07] 2025-06-05 15:18:27,247 | INFO     | ..............................
[2025-06-05 17:20:07] 2025-06-05 15:18:27,358 | INFO     | 
[2025-06-05 17:20:07] 2025-06-05 15:18:27,358 | INFO     | job summary report
[2025-06-05 17:20:07] 2025-06-05 15:18:27,359 | INFO     | --------------------------------------------------
[2025-06-05 17:20:07] 2025-06-05 15:18:27,359 | INFO     | PanDA job id: 6677599654
[2025-06-05 17:20:07] 2025-06-05 15:18:27,359 | INFO     | task id: 45006595
[2025-06-05 17:20:07] 2025-06-05 15:18:27,359 | INFO     | errors: (none)
[2025-06-05 17:20:07] 2025-06-05 15:18:27,359 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 17:20:07] 2025-06-05 15:18:27,359 | INFO     | pilot state: finished 
[2025-06-05 17:20:07] 2025-06-05 15:18:27,359 | INFO     | transexitcode: 0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,360 | INFO     | exeerrorcode: 0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,360 | INFO     | exeerrordiag: 
[2025-06-05 17:20:07] 2025-06-05 15:18:27,360 | INFO     | exitcode: 0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,360 | INFO     | exitmsg: OK
[2025-06-05 17:20:07] 2025-06-05 15:18:27,360 | INFO     | cpuconsumptiontime: 41337 s
[2025-06-05 17:20:07] 2025-06-05 15:18:27,360 | INFO     | nevents: 400
[2025-06-05 17:20:07] 2025-06-05 15:18:27,360 | INFO     | neventsw: 0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,360 | INFO     | pid: 3858501
[2025-06-05 17:20:07] 2025-06-05 15:18:27,360 | INFO     | pgrp: 3858501
[2025-06-05 17:20:07] 2025-06-05 15:18:27,361 | INFO     | corecount: 4
[2025-06-05 17:20:07] 2025-06-05 15:18:27,361 | INFO     | event service: False
[2025-06-05 17:20:07] 2025-06-05 15:18:27,361 | INFO     | sizes: {0: 2397353, 4: 2397559, 11: 2397587, 10778: 2426517, 10779: 2435536, 10786: 2435650}
[2025-06-05 17:20:07] 2025-06-05 15:18:27,361 | INFO     | --------------------------------------------------
[2025-06-05 17:20:07] 2025-06-05 15:18:27,361 | INFO     | 
[2025-06-05 17:20:07] 2025-06-05 15:18:27,361 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2025-06-05 17:20:07] 2025-06-05 15:18:27,379 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,380 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,380 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,380 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,380 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,380 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,380 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,381 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,381 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,381 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,381 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,381 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,381 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,381 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,381 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,382 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,382 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,382 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 17:20:07] 2025-06-05 15:18:27,382 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,382 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 17:20:07] 2025-06-05 15:18:27,382 | INFO     | job 6677599654 has completed (purged errors)
[2025-06-05 17:20:07] 2025-06-05 15:18:27,383 | INFO     | overall cleanup function is called
[2025-06-05 17:20:07] 2025-06-05 15:18:27,673 | INFO     | PID=3851785 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 17:20:07] 2025-06-05 15:18:27,674 | INFO     | .. there are 3 such processes running
[2025-06-05 17:20:07] 2025-06-05 15:18:28,392 | INFO     | --- collectZombieJob: --- 10, [3858501]
[2025-06-05 17:20:07] 2025-06-05 15:18:28,392 | INFO     | zombie collector waiting for pid 3858501
[2025-06-05 17:20:07] 2025-06-05 15:18:28,392 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 17:20:07] 2025-06-05 15:18:28,392 | INFO     | collected zombie processes
[2025-06-05 17:20:07] 2025-06-05 15:18:28,392 | INFO     | will attempt to kill all subprocesses of pid=3858501
[2025-06-05 17:20:07] 2025-06-05 15:18:28,632 | INFO     | process IDs to be killed: [3858501] (in reverse order)
[2025-06-05 17:20:07] 2025-06-05 15:18:28,699 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 17:20:07] 2025-06-05 15:18:28,699 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 17:20:07] 2025-06-05 15:18:28,706 | INFO     | did not find any defunct processes belonging to 3858501
[2025-06-05 17:20:07] 2025-06-05 15:18:28,713 | INFO     | did not find any defunct processes belonging to 3858501
[2025-06-05 17:20:07] 2025-06-05 15:18:28,713 | INFO     | ready for new job
[2025-06-05 17:20:07] 2025-06-05 15:18:28,713 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 17:20:07] 2025-06-05 15:18:28,715 | INFO     | **************************************
[2025-06-05 17:20:07] 2025-06-05 15:18:28,715 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 17:20:07] 2025-06-05 15:18:28,715 | INFO     | **************************************
[2025-06-05 17:20:07] 2025-06-05 15:18:28,715 | INFO     | 
[2025-06-05 17:20:07] 2025-06-05 15:18:28,717 | INFO     | architecture information:
[2025-06-05 17:20:07] 2025-06-05 15:18:28,717 | INFO     | executing command: cat /etc/os-release
[2025-06-05 17:20:07] 2025-06-05 15:18:28,729 | INFO     | cat /etc/os-release:
[2025-06-05 17:20:07] NAME="CentOS Linux"
[2025-06-05 17:20:07] VERSION="7 (Core)"
[2025-06-05 17:20:07] ID="centos"
[2025-06-05 17:20:07] ID_LIKE="rhel fedora"
[2025-06-05 17:20:07] VERSION_ID="7"
[2025-06-05 17:20:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 17:20:07] ANSI_COLOR="0;31"
[2025-06-05 17:20:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 17:20:07] HOME_URL="https://www.centos.org/"
[2025-06-05 17:20:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 17:20:07] 
[2025-06-05 17:20:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 17:20:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 17:20:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 17:20:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 17:20:07] 
[2025-06-05 17:20:07] 2025-06-05 15:18:28,729 | INFO     | **************************************
[2025-06-05 17:20:07] 2025-06-05 15:18:29,232 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2025-06-05 17:20:07] 2025-06-05 15:18:29,246 | INFO     | sufficient remaining disk space (3464929214464 B)
[2025-06-05 17:20:07] 2025-06-05 15:18:29,247 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 17:20:07] 2025-06-05 15:18:29,247 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 17:20:07] 2025-06-05 15:18:29,247 | INFO     | update_server=False
[2025-06-05 17:20:07] 2025-06-05 15:18:29,247 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 17:20:07] 2025-06-05 15:18:29,248 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:20:07] 2025-06-05 15:18:29,248 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:20:07] 2025-06-05 15:18:29,248 | INFO     | aborting loop
[2025-06-05 17:20:07] 2025-06-05 15:18:29,351 | INFO     | all data control threads have been joined
[2025-06-05 17:20:07] 2025-06-05 15:18:29,679 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 17:20:07] 2025-06-05 15:18:29,680 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 17:20:07] 2025-06-05 15:18:29,680 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 17:20:07] 2025-06-05 15:18:29,962 | INFO     | all payload control threads have been joined
[2025-06-05 17:20:07] 2025-06-05 15:18:30,247 | INFO     | all job control threads have been joined
[2025-06-05 17:20:07] 2025-06-05 15:18:30,252 | INFO     | [job] retrieve thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:30,254 | INFO     | [job] queue monitor thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:30,254 | INFO     | [job] job monitor thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:30,356 | INFO     | [data] control thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:30,498 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:30,581 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 17:20:07] 2025-06-05 15:18:30,681 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 17:20:07] 2025-06-05 15:18:30,804 | INFO     | [job] validate thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:30,923 | INFO     | [data] copytool_in thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:30,967 | INFO     | [payload] control thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:31,009 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:31,249 | INFO     | [job] control thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:31,305 | INFO     | [payload] validate_post thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:31,306 | INFO     | [payload] failed_post thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:31,423 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:32,587 | INFO     | [data] copytool_out thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:34,684 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:40,021 | INFO     | job.realtimelogging is not enabled
[2025-06-05 17:20:07] 2025-06-05 15:18:41,027 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 17:20:07] 2025-06-05 15:18:41,504 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22357709784896)>', '<ExcThread(monitor, started 22357471098624)>']
[2025-06-05 17:20:07] 2025-06-05 15:18:41,726 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 17:20:07] 2025-06-05 15:18:41,727 | INFO     | [monitor] control thread has ended
[2025-06-05 17:20:07] 2025-06-05 15:18:46,513 | INFO     | all workflow threads have been joined
[2025-06-05 17:20:07] 2025-06-05 15:18:46,513 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 17:20:07] 2025-06-05 15:18:46,513 | INFO     | traces error code: 0
[2025-06-05 17:20:07] 2025-06-05 15:18:46,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 17:20:07] 2025-06-05 15:18:46,649 [wrapper] ==== pilot stdout END ====
[2025-06-05 17:20:07] 2025-06-05 15:18:46,651 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 17:20:07] 2025-06-05 15:18:46,654 [wrapper] pilotpid: 3851785
[2025-06-05 17:20:07] 2025-06-05 15:18:46,656 [wrapper] Pilot exit status: 0
[2025-06-05 17:20:07] 2025-06-05 15:18:46,665 [wrapper] pandaids: 6677599654
[2025-06-05 17:20:07] 2025-06-05 15:18:46,708 [wrapper] cleanup supervisor_pilot 4042909 3851786
[2025-06-05 17:20:07] 2025-06-05 15:18:46,711 [wrapper] Test setup, not cleaning
[2025-06-05 17:20:07] 2025-06-05 15:18:46,713 [wrapper] apfmon messages muted
[2025-06-05 17:20:07] 2025-06-05 15:18:46,715 [wrapper] ==== wrapper stdout END ====
[2025-06-05 17:20:07] 2025-06-05 15:18:46,718 [wrapper] ==== wrapper stderr END ====
[2025-06-05 17:20:07]  *** Error codes and diagnostics ***
[2025-06-05 17:20:07]     "exeErrorCode": 0,
[2025-06-05 17:20:07]     "exeErrorDiag": "",
[2025-06-05 17:20:07]     "pilotErrorCode": 0,
[2025-06-05 17:20:07]     "pilotErrorDiag": "",
[2025-06-05 17:20:07]  *** Listing of results directory ***
[2025-06-05 17:20:07] total 393280
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc    495897 Jun  3 12:57 pilot3.tar.gz
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc      5111 Jun  3 13:28 queuedata.json
[2025-06-05 17:20:07] -rwx------ 1 boinc boinc     37140 Jun  3 13:29 runpilot2-wrapper.sh
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc       100 Jun  5 14:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 17:20:07] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 14:18 run_atlas
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc       105 Jun  5 14:18 job.xml
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc      6418 Jun  5 14:18 init_data.xml
[2025-06-05 17:20:07] -rw-r--r-- 2 boinc boinc 214924594 Jun  5 14:18 EVNT.45006593._001232.pool.root.1
[2025-06-05 17:20:07] -rw-r--r-- 2 boinc boinc     15093 Jun  5 14:18 start_atlas.sh
[2025-06-05 17:20:07] drwxrwx--x 2 boinc boinc      4096 Jun  5 14:18 shared
[2025-06-05 17:20:07] -rw-r--r-- 2 boinc boinc    508885 Jun  5 14:18 input.tar.gz
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc         0 Jun  5 14:18 boinc_lockfile
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc      2525 Jun  5 14:18 pandaJob.out
[2025-06-05 17:20:07] -rw------- 1 boinc boinc    983210 Jun  5 14:18 agis_schedconf.cvmfs.json
[2025-06-05 17:20:07] -rw------- 1 boinc boinc   1598969 Jun  5 14:18 agis_ddmendpoints.agis.ALL.json
[2025-06-05 17:20:07] drwx------ 4 boinc boinc      4096 Jun  5 14:18 pilot3
[2025-06-05 17:20:07] -rw------- 1 boinc boinc 181321567 Jun  5 17:17 HITS.45006595._030740.pool.root.1
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc       528 Jun  5 17:17 boinc_task_state.xml
[2025-06-05 17:20:07] -rw------- 1 boinc boinc      1033 Jun  5 17:18 memory_monitor_summary.json
[2025-06-05 17:20:07] -rw------- 1 boinc boinc    295500 Jun  5 17:18 log.45006595._030740.job.log.tgz.1
[2025-06-05 17:20:07] -rw------- 1 boinc boinc        95 Jun  5 17:18 pilot_heartbeat.json
[2025-06-05 17:20:07] -rw------- 1 boinc boinc      7725 Jun  5 17:18 heartbeat.json
[2025-06-05 17:20:07] -rw------- 1 boinc boinc      4436 Jun  5 17:18 pilotlog.txt
[2025-06-05 17:20:07] -rw------- 1 boinc boinc   1027326 Jun  5 17:18 log.45006595._030740.job.log.1
[2025-06-05 17:20:07] -rw------- 1 boinc boinc       357 Jun  5 17:18 output.list
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc       620 Jun  5 17:18 runtime_log
[2025-06-05 17:20:07] -rw------- 1 boinc boinc   1341440 Jun  5 17:18 result.tar.gz
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc      9021 Jun  5 17:18 runtime_log.err
[2025-06-05 17:20:07] -rw------- 1 boinc boinc       664 Jun  5 17:18 fO2LDmQ0eg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmITYKDmOk9hRo.diag
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc      8192 Jun  5 17:20 boinc_mmap_file
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc        26 Jun  5 17:20 wrapper_checkpoint.txt
[2025-06-05 17:20:07] -rw-r--r-- 1 boinc boinc     20833 Jun  5 17:20 stderr.txt
[2025-06-05 17:20:07] HITS file was successfully produced:
[2025-06-05 17:20:07] -rw------- 1 boinc boinc 181321567 Jun  5 17:17 shared/HITS.pool.root.1
[2025-06-05 17:20:07]  *** Contents of shared directory: ***
[2025-06-05 17:20:07] total 388792
[2025-06-05 17:20:07] -rw-r--r-- 2 boinc boinc 214924594 Jun  5 14:18 ATLAS.root_0
[2025-06-05 17:20:07] -rw-r--r-- 2 boinc boinc     15093 Jun  5 14:18 start_atlas.sh
[2025-06-05 17:20:07] -rw-r--r-- 2 boinc boinc    508885 Jun  5 14:18 input.tar.gz
[2025-06-05 17:20:07] -rw------- 1 boinc boinc 181321567 Jun  5 17:17 HITS.pool.root.1
[2025-06-05 17:20:07] -rw------- 1 boinc boinc   1341440 Jun  5 17:18 result.tar.gz
17:20:09 (3848235): run_atlas exited; CPU time 41644.209538
17:20:09 (3848235): called boinc_finish(0)

</stderr_txt>
]]>

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