Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:11:51 (10947): wrapper (7.7.26015): starting
10:11:51 (10947): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 10:11:51] Arguments: --nthreads 8
[2025-06-03 10:11:51] Threads: 8
[2025-06-03 10:11:51] Checking for CVMFS
[2025-06-03 10:11:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 10:11:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 10:11:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 10:11:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 10:11:52] 2.12.6.0 5793 3 30264 146744 1 1 27206402 32935937 0 16776704 0 3 50.000 1290 37941 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 10:11:52] CVMFS is ok
[2025-06-03 10:11:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 10:11:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 10:11:52] Further information can be found at the LHC@home message board.
[2025-06-03 10:11:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 10:11:52] Checking for apptainer binary...
[2025-06-03 10:11:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 10:11:52] Running /usr/bin/apptainer --version
[2025-06-03 10:11:52] apptainer version 1.4.0-1.el9
[2025-06-03 10:11:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 10:11:53] c6-1-26-2.aglt2.org
[2025-06-03 10:11:53] apptainer works
[2025-06-03 10:11:53] Set ATHENA_PROC_NUMBER=8
[2025-06-03 10:11:53] Set ATHENA_CORE_NUMBER=8
[2025-06-03 10:11:53] Starting ATLAS job with PandaID=6677574180
[2025-06-03 10:11:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:37:24 (11056): wrapper (7.7.26015): starting
11:37:24 (11056): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 11:37:24] Arguments: --nthreads 8
[2025-06-03 11:37:24] Threads: 8
[2025-06-03 11:37:24] This job has been restarted, cleaning up previous attempt
[2025-06-03 11:37:24] Checking for CVMFS
[2025-06-03 11:37:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 11:37:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 11:37:24] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 11:37:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 11:37:24] 2.12.6.0 5284 4 29752 146748 3 1 27570844 32935937 0 16776704 0 2 100.000 1 111 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 11:37:24] CVMFS is ok
[2025-06-03 11:37:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 11:37:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 11:37:24] Further information can be found at the LHC@home message board.
[2025-06-03 11:37:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 11:37:24] Checking for apptainer binary...
[2025-06-03 11:37:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 11:37:24] Running /usr/bin/apptainer --version
[2025-06-03 11:37:26] apptainer version 1.4.1-1.el9
[2025-06-03 11:37:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 11:37:27] c6-1-26-2.aglt2.org
[2025-06-03 11:37:27] apptainer works
[2025-06-03 11:37:28] Set ATHENA_PROC_NUMBER=8
[2025-06-03 11:37:28] Set ATHENA_CORE_NUMBER=8
[2025-06-03 11:37:28] Starting ATLAS job with PandaID=6677574180
[2025-06-03 11:37:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:58:46]  *** The last 200 lines of the pilot log: ***
[2025-06-03 12:58:46]  is_tar=False
[2025-06-03 12:58:46]  lfn=log.45006595._028550.job.log.tgz.1
[2025-06-03 12:58:46]  mtime=0
[2025-06-03 12:58:46]  protocol_id=None
[2025-06-03 12:58:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 12:58:46]  replicas=None
[2025-06-03 12:58:46]  scope=mc23_13p6TeV
[2025-06-03 12:58:46]  status=None
[2025-06-03 12:58:46]  status_code=0
[2025-06-03 12:58:46]  storage_token=
[2025-06-03 12:58:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677574180/log.45006595._028550.job.log.tgz.1
[2025-06-03 12:58:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/fe/log.45006595._028550.job.log.tgz.1
[2025-06-03 12:58:46]  workdir=None
[2025-06-03 12:58:46] ]
[2025-06-03 12:58:46] 2025-06-03 16:58:18,352 | INFO     | transferring file log.45006595._028550.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677574180/log.45006595._028550.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 12:58:46] 2025-06-03 16:58:18,352 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677574180/log.45006595._028550.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._028550.job
[2025-06-03 12:58:46] 2025-06-03 16:58:18,370 | INFO     | adding to output.list: log.45006595._028550.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/fe/log.45006595._028550.job.log.tg
[2025-06-03 12:58:46] 2025-06-03 16:58:18,371 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 12:58:46] 2025-06-03 16:58:18,371 | INFO     | summary of transferred files:
[2025-06-03 12:58:46] 2025-06-03 16:58:18,371 | INFO     |  -- lfn=log.45006595._028550.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 12:58:46] 2025-06-03 16:58:18,371 | INFO     | stage-out finished correctly
[2025-06-03 12:58:46] 2025-06-03 16:58:18,531 | WARNING  | process 83546 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 12:58:46] 2025-06-03 16:58:18,531 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677574180/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 12:58:46] 2025-06-03 16:58:18,636 | INFO     | number of running child processes to parent process 83546: 1
[2025-06-03 12:58:46] 2025-06-03 16:58:18,636 | INFO     | maximum number of monitored processes: 6
[2025-06-03 12:58:46] 2025-06-03 16:58:20,439 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 12:58:46] 2025-06-03 16:58:20,493 | INFO     | job 6677574180 has state=finished
[2025-06-03 12:58:46] 2025-06-03 16:58:20,493 | INFO     | preparing for final server update for job 6677574180 in state='finished'
[2025-06-03 12:58:46] 2025-06-03 16:58:20,494 | INFO     | this job has now completed (state=finished)
[2025-06-03 12:58:46] 2025-06-03 16:58:20,494 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 12:58:46] 2025-06-03 16:58:20,494 | INFO     | log transfer has been attempted: DONE
[2025-06-03 12:58:46] 2025-06-03 16:58:20,494 | INFO     | job 6677574180 has finished - writing final server update
[2025-06-03 12:58:46] 2025-06-03 16:58:20,495 | INFO     | total number of processed events: 400 (read)
[2025-06-03 12:58:46] 2025-06-03 16:58:20,512 | INFO     | executing command: lscpu
[2025-06-03 12:58:46] 2025-06-03 16:58:20,591 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 12:58:46] 2025-06-03 16:58:21,139 | INFO     | monitor loop #359: job 0:6677574180 is in state 'finished'
[2025-06-03 12:58:46] 2025-06-03 16:58:21,139 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 12:58:46] 2025-06-03 16:58:23,642 | INFO     | monitor loop #360: job 0:6677574180 is in state 'finished'
[2025-06-03 12:58:46] 2025-06-03 16:58:23,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 12:58:46] 2025-06-03 16:58:25,809 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 12:58:46] 2025-06-03 16:58:25,809 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677574180/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 12:58:46] 2025-06-03 16:58:25,810 | INFO     | extracted standard info from prmon json
[2025-06-03 12:58:46] 2025-06-03 16:58:25,810 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 12:58:46] 2025-06-03 16:58:25,811 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 12:58:46] 2025-06-03 16:58:25,811 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 12:58:46] 2025-06-03 16:58:25,811 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 12:58:46] 2025-06-03 16:58:25,814 | INFO     | fitting pss+swap vs Time
[2025-06-03 12:58:46] 2025-06-03 16:58:25,815 | INFO     | sum of square deviations: 115715658.0
[2025-06-03 12:58:46] 2025-06-03 16:58:25,815 | INFO     | sum of deviations: 9286244049.0
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | mean x: 1748967566.5
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | mean y: 2118082.888888889
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | -- intersect: -140353473692.8122
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | intersect: -140353473692.8122
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | chi2: 1.1673715067841133
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | -- intersect: -140353473692.8122
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | current memory leak: 80.25 B/s (using 72 data points, chi2=1.17)
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | ..............................
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | . Timing measurements:
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | . get job = 0 s
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | . initial setup = 1 s
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | . payload setup = 11 s
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | . stage-in = 0 s
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | . payload execution = 4801 s
[2025-06-03 12:58:46] 2025-06-03 16:58:25,816 | INFO     | . stage-out = 0 s
[2025-06-03 12:58:46] 2025-06-03 16:58:25,817 | INFO     | . log creation = 0 s
[2025-06-03 12:58:46] 2025-06-03 16:58:25,817 | INFO     | ..............................
[2025-06-03 12:58:46] 2025-06-03 16:58:25,860 | INFO     | 
[2025-06-03 12:58:46] 2025-06-03 16:58:25,861 | INFO     | job summary report
[2025-06-03 12:58:46] 2025-06-03 16:58:25,861 | INFO     | --------------------------------------------------
[2025-06-03 12:58:46] 2025-06-03 16:58:25,861 | INFO     | PanDA job id: 6677574180
[2025-06-03 12:58:46] 2025-06-03 16:58:25,861 | INFO     | task id: 45006595
[2025-06-03 12:58:46] 2025-06-03 16:58:25,861 | INFO     | errors: (none)
[2025-06-03 12:58:46] 2025-06-03 16:58:25,861 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 12:58:46] 2025-06-03 16:58:25,861 | INFO     | pilot state: finished 
[2025-06-03 12:58:46] 2025-06-03 16:58:25,861 | INFO     | transexitcode: 0
[2025-06-03 12:58:46] 2025-06-03 16:58:25,861 | INFO     | exeerrorcode: 0
[2025-06-03 12:58:46] 2025-06-03 16:58:25,861 | INFO     | exeerrordiag: 
[2025-06-03 12:58:46] 2025-06-03 16:58:25,861 | INFO     | exitcode: 0
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | exitmsg: OK
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | cpuconsumptiontime: 32844 s
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | nevents: 400
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | neventsw: 0
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | pid: 83546
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | pgrp: 83546
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | corecount: 8
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | event service: False
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | sizes: {0: 2405178, 6: 2405384, 11: 2405412, 4816: 2431481, 4817: 2440422, 4819: 2440478, 4824: 2440776}
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | --------------------------------------------------
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | 
[2025-06-03 12:58:46] 2025-06-03 16:58:25,862 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 12:58:46] 2025-06-03 16:58:25,883 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,884 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 12:58:46] 2025-06-03 16:58:25,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 12:58:46] 2025-06-03 16:58:25,885 | INFO     | job 6677574180 has completed (purged errors)
[2025-06-03 12:58:46] 2025-06-03 16:58:25,885 | INFO     | overall cleanup function is called
[2025-06-03 12:58:46] 2025-06-03 16:58:26,892 | INFO     | --- collectZombieJob: --- 10, [83546]
[2025-06-03 12:58:46] 2025-06-03 16:58:26,892 | INFO     | zombie collector waiting for pid 83546
[2025-06-03 12:58:46] 2025-06-03 16:58:26,892 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 12:58:46] 2025-06-03 16:58:26,893 | INFO     | collected zombie processes
[2025-06-03 12:58:46] 2025-06-03 16:58:26,893 | INFO     | will attempt to kill all subprocesses of pid=83546
[2025-06-03 12:58:46] 2025-06-03 16:58:27,043 | INFO     | process IDs to be killed: [83546] (in reverse order)
[2025-06-03 12:58:46] 2025-06-03 16:58:27,101 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 12:58:46] 2025-06-03 16:58:27,102 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 12:58:46] 2025-06-03 16:58:27,111 | INFO     | did not find any defunct processes belonging to 83546
[2025-06-03 12:58:46] 2025-06-03 16:58:27,117 | INFO     | did not find any defunct processes belonging to 83546
[2025-06-03 12:58:46] 2025-06-03 16:58:27,117 | INFO     | ready for new job
[2025-06-03 12:58:46] 2025-06-03 16:58:27,117 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 12:58:46] 2025-06-03 16:58:27,118 | INFO     | **************************************
[2025-06-03 12:58:46] 2025-06-03 16:58:27,118 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 12:58:46] 2025-06-03 16:58:27,118 | INFO     | **************************************
[2025-06-03 12:58:46] 2025-06-03 16:58:27,118 | INFO     | 
[2025-06-03 12:58:46] 2025-06-03 16:58:27,132 | INFO     | architecture information:
[2025-06-03 12:58:46] 2025-06-03 16:58:27,132 | INFO     | executing command: cat /etc/os-release
[2025-06-03 12:58:46] 2025-06-03 16:58:27,142 | INFO     | cat /etc/os-release:
[2025-06-03 12:58:46] NAME="CentOS Linux"
[2025-06-03 12:58:46] VERSION="7 (Core)"
[2025-06-03 12:58:46] ID="centos"
[2025-06-03 12:58:46] ID_LIKE="rhel fedora"
[2025-06-03 12:58:46] VERSION_ID="7"
[2025-06-03 12:58:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 12:58:46] ANSI_COLOR="0;31"
[2025-06-03 12:58:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 12:58:46] HOME_URL="https://www.centos.org/"
[2025-06-03 12:58:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 12:58:46] 
[2025-06-03 12:58:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 12:58:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 12:58:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 12:58:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 12:58:46] 
[2025-06-03 12:58:46] 2025-06-03 16:58:27,142 | INFO     | **************************************
[2025-06-03 12:58:46] 2025-06-03 16:58:27,646 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 12:58:46] 2025-06-03 16:58:27,664 | INFO     | sufficient remaining disk space (72793194496 B)
[2025-06-03 12:58:46] 2025-06-03 16:58:27,664 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 12:58:46] 2025-06-03 16:58:27,665 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 12:58:46] 2025-06-03 16:58:27,665 | INFO     | update_server=False
[2025-06-03 12:58:46] 2025-06-03 16:58:27,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 12:58:46] 2025-06-03 16:58:27,665 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 12:58:46] 2025-06-03 16:58:27,666 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:58:46] 2025-06-03 16:58:27,666 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 12:58:46] 2025-06-03 16:58:27,667 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 12:58:46] 2025-06-03 16:58:27,667 | INFO     | aborting loop
[2025-06-03 12:58:46] 2025-06-03 16:58:27,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 12:58:46] 2025-06-03 16:58:27,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 12:58:46] 2025-06-03 16:58:28,125 | INFO     | all job control threads have been joined
[2025-06-03 12:58:46] 2025-06-03 16:58:28,455 | INFO     | all data control threads have been joined
[2025-06-03 12:58:46] 2025-06-03 16:58:28,671 | INFO     | [job] retrieve thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:28,673 | INFO     | [job] job monitor thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:28,673 | INFO     | [job] queue monitor thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:28,930 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 12:58:46] 2025-06-03 16:58:28,989 | INFO     | all payload control threads have been joined
[2025-06-03 12:58:46] 2025-06-03 16:58:29,127 | INFO     | [job] control thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:29,361 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:29,460 | INFO     | [data] control thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:29,545 | INFO     | [payload] failed_post thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:29,640 | INFO     | [job] validate thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:29,657 | INFO     | [data] copytool_in thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:29,983 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:29,994 | INFO     | [payload] control thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:30,000 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:30,123 | INFO     | [payload] validate_post thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:30,935 | INFO     | [data] copytool_out thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:31,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 12:58:46] 2025-06-03 16:58:35,004 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:37,805 | INFO     | job.realtimelogging is not enabled
[2025-06-03 12:58:46] 2025-06-03 16:58:38,810 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 12:58:46] 2025-06-03 16:58:40,798 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139873061656384)>', '<ExcThread(monitor, started 139872438310656)>']
[2025-06-03 12:58:46] 2025-06-03 16:58:41,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 12:58:46] 2025-06-03 16:58:41,735 | INFO     | [monitor] control thread has ended
[2025-06-03 12:58:46] 2025-06-03 16:58:45,824 | INFO     | all workflow threads have been joined
[2025-06-03 12:58:46] 2025-06-03 16:58:45,824 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 12:58:46] 2025-06-03 16:58:45,824 | INFO     | traces error code: 0
[2025-06-03 12:58:46] 2025-06-03 16:58:45,825 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 12:58:46] 2025-06-03 16:58:45,908 [wrapper] ==== pilot stdout END ====
[2025-06-03 12:58:46] 2025-06-03 16:58:45,913 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 12:58:46] 2025-06-03 16:58:45,918 [wrapper] pilotpid: 36972
[2025-06-03 12:58:46] 2025-06-03 16:58:45,922 [wrapper] Pilot exit status: 0
[2025-06-03 12:58:46] 2025-06-03 16:58:45,937 [wrapper] pandaids: 6677574180 6677574180
[2025-06-03 12:58:46] 2025-06-03 16:58:45,977 [wrapper] cleanup supervisor_pilot  240181 36974
[2025-06-03 12:58:46] 2025-06-03 16:58:45,980 [wrapper] Test setup, not cleaning
[2025-06-03 12:58:46] 2025-06-03 16:58:45,984 [wrapper] apfmon messages muted
[2025-06-03 12:58:46] 2025-06-03 16:58:45,989 [wrapper] ==== wrapper stdout END ====
[2025-06-03 12:58:46] 2025-06-03 16:58:45,993 [wrapper] ==== wrapper stderr END ====
[2025-06-03 12:58:46]  *** Error codes and diagnostics ***
[2025-06-03 12:58:46]     "exeErrorCode": 0,
[2025-06-03 12:58:46]     "exeErrorDiag": "",
[2025-06-03 12:58:46]     "pilotErrorCode": 0,
[2025-06-03 12:58:46]     "pilotErrorDiag": "",
[2025-06-03 12:58:46]  *** Listing of results directory ***
[2025-06-03 12:58:46] total 605468
[2025-06-03 12:58:46] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 05:56 pilot3.tar.gz
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 06:09 queuedata.json
[2025-06-03 12:58:46] -rwx------. 1 boincer umatlas     37140 Jun  3 06:10 runpilot2-wrapper.sh
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas       100 Jun  3 10:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 12:58:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 10:11 run_atlas
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas       105 Jun  3 10:11 job.xml
[2025-06-03 12:58:46] -rw-r--r--. 3 boincer umatlas 216111843 Jun  3 10:11 EVNT.45006593._001142.pool.root.1
[2025-06-03 12:58:46] -rw-r--r--. 3 boincer umatlas 216111843 Jun  3 10:11 ATLAS.root_0
[2025-06-03 12:58:46] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 10:11 start_atlas.sh
[2025-06-03 12:58:46] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 10:11 shared
[2025-06-03 12:58:46] -rw-r--r--. 2 boincer umatlas    508883 Jun  3 10:11 input.tar.gz
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas         0 Jun  3 10:11 boinc_lockfile
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas   1603667 Jun  3 10:12 agis_ddmendpoints.agis.ALL.json
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas      2522 Jun  3 11:37 pandaJob.out
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas    983735 Jun  3 11:37 agis_schedconf.cvmfs.json
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas      6841 Jun  3 12:55 init_data.xml
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas 182396257 Jun  3 12:57 HITS.45006595._028550.pool.root.1
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas       530 Jun  3 12:57 boinc_task_state.xml
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas      1038 Jun  3 12:58 memory_monitor_summary.json
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas    290847 Jun  3 12:58 log.45006595._028550.job.log.tgz.1
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas        96 Jun  3 12:58 pilot_heartbeat.json
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas      7729 Jun  3 12:58 heartbeat.json
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 12:58 boinc_mmap_file
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas        27 Jun  3 12:58 wrapper_checkpoint.txt
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas      4548 Jun  3 12:58 pilotlog.txt
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas    473420 Jun  3 12:58 log.45006595._028550.job.log.1
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas       357 Jun  3 12:58 output.list
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas       620 Jun  3 12:58 runtime_log
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas    788480 Jun  3 12:58 result.tar.gz
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas       782 Jun  3 12:58 J2QMDmjmdg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmiGYKDmbfmlKm.diag
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas      8749 Jun  3 12:58 runtime_log.err
[2025-06-03 12:58:46] -rw-r--r--. 1 boincer umatlas     23590 Jun  3 12:58 stderr.txt
[2025-06-03 12:58:46] HITS file was successfully produced:
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas 182396257 Jun  3 12:57 shared/HITS.pool.root.1
[2025-06-03 12:58:46]  *** Contents of shared directory: ***
[2025-06-03 12:58:46] total 390468
[2025-06-03 12:58:46] -rw-r--r--. 3 boincer umatlas 216111843 Jun  3 10:11 ATLAS.root_0
[2025-06-03 12:58:46] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 10:11 start_atlas.sh
[2025-06-03 12:58:46] -rw-r--r--. 2 boincer umatlas    508883 Jun  3 10:11 input.tar.gz
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas 182396257 Jun  3 12:57 HITS.pool.root.1
[2025-06-03 12:58:46] -rw-------. 1 boincer umatlas    788480 Jun  3 12:58 result.tar.gz
12:58:47 (11056): run_atlas exited; CPU time 32934.467725
12:58:47 (11056): called boinc_finish(0)

</stderr_txt>
]]>

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